Spo01990 (gene)

Overview
NameSpo01990
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 46013566 .. 46014856 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAGAAAATGGATACTTTAAGAAAAGTGGGATCTCAAAATGTCAGTATCACAATCAAGTGGCCATTACTATTAACTCTCTCAATCAGAGATCCACACAGGGGTGAGAAAAAAAGGAGTACATAAAAAATTTCCCCTTACTGGAACTTTATCAAAAGGCCAGAAAAAAAGGCAATGATAAAAATAGATGTAGTATAGTTGATCAATAAAGCAAAATTTTCGAGAAAAAATCACCTTAACTTCTTCGTAAAGCTTCTTTTCCCACGCCAGAAGGCGTTCCAATGTTGAGCAAAGACTCTTAGAACCTCCGGTTGCTTCCAACGCACTGGTATCAAGCCGATACTTCACAGCTAGTGGAGGCTTCGAAGTCCAGCTTGAGCTCAAGGTACTCAACACCCCACTTGAATGATAAACAGTTTCTGCAACATCCAACAACAACAAAAGTAAATGCCTAAATCCATAAAACTCATCAGACGATGAACTCATTCAATTCTAACATCACTAGCTATTCATCATTCTACAGTACTGTTCTATGTACTCTACATTCGGAACTCAAACTATATCAACCAGAGGATGAATTGATTCAAATATCCACCAATTACTCAAAAATCCAATTACAGTTCACCATCATGTATAAATTTTTAACAATAAATAGTACCCATATTCAATCAAATCTATTCCAGATCACAGGCAACAATATGATTCTGTAACAATTATACAAATAAAAAACGTCAGTTCATACTGCTAATACAATGTCAACTAAATTGTTTCAATTCATAAACAGGTGTAAAAATTGGCTCAAAACTACTTATACTCTGGATCACAGGAAATAACAAGCAACGATAATATGTTATTTGAACATAAAGATGCAAAGATAGGAAGATCATACTCTTTATTTGTCGAAAACTGCGATCAAGCTGAGCTCTACCAGACTCTAACATCTCAGAAACCTGATCCCCAGAAGCAGCAGCTTTTTCAAAATACTCCTTAAGTGAAGCAACAATCTCCTGAAGATCTTTATGCCTAACCACAATCCTCATCTCTTCACTCCCACAAACTTCTCTCCCATTATTCTTCCAGCTCCTCGAAGACGAAGCACCATCCTCGGACCGCTCCTCCACCTTCTTCAACGGCGGAGGCATCCCAACGGGCTCGCTCCGGACCGAGGAAGACCCGAAATGTGACCGTGTTCGCAGCTCGGAAATCTCCGATCTCGTTTCCCTCTCATCATCCCCATCATCCTCCTCTTCATCAACATCGTCTGAATCCGAGGATGTTGTGCTGTAA

mRNA sequence

ATGGGATCAGAAAATGGATACTTTAAGAAAAGTGGGATCTCAAAATGTCAGTATCACAATCAAGTGGCCATTACTATTAACTCTCTCAATCAGAGATCCACACAGGGAAGGCGTTCCAATGTTGAGCAAAGACTCTTAGAACCTCCGGTTGCTTCCAACGCACTGGTATCAAGCCGATACTTCACAGCTAGTGGAGGCTTCGAAGTCCAGCTTGAGCTCAAGCTCCTCGAAGACGAAGCACCATCCTCGGACCGCTCCTCCACCTTCTTCAACGGCGGAGGCATCCCAACGGGCTCGCTCCGGACCGAGGAAGACCCGAAATGTGACCGTGTTCGCAGCTCGGAAATCTCCGATCTCGTTTCCCTCTCATCATCCCCATCATCCTCCTCTTCATCAACATCGTCTGAATCCGAGGATGTTGTGCTGTAA

Coding sequence (CDS)

ATGGGATCAGAAAATGGATACTTTAAGAAAAGTGGGATCTCAAAATGTCAGTATCACAATCAAGTGGCCATTACTATTAACTCTCTCAATCAGAGATCCACACAGGGAAGGCGTTCCAATGTTGAGCAAAGACTCTTAGAACCTCCGGTTGCTTCCAACGCACTGGTATCAAGCCGATACTTCACAGCTAGTGGAGGCTTCGAAGTCCAGCTTGAGCTCAAGCTCCTCGAAGACGAAGCACCATCCTCGGACCGCTCCTCCACCTTCTTCAACGGCGGAGGCATCCCAACGGGCTCGCTCCGGACCGAGGAAGACCCGAAATGTGACCGTGTTCGCAGCTCGGAAATCTCCGATCTCGTTTCCCTCTCATCATCCCCATCATCCTCCTCTTCATCAACATCGTCTGAATCCGAGGATGTTGTGCTGTAA

Protein sequence

MGSENGYFKKSGISKCQYHNQVAITINSLNQRSTQGRRSNVEQRLLEPPVASNALVSSRYFTASGGFEVQLELKLLEDEAPSSDRSSTFFNGGGIPTGSLRTEEDPKCDRVRSSEISDLVSLSSSPSSSSSSTSSESEDVVL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01990.1Spo01990.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo01990.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01990.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01990.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01990.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0032259 methylation
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0006470 protein dephosphorylation
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0044424 intracellular part
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0038023 signaling receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0030797 24-methylenesterol C-methyltransferase activity
molecular_function GO:0003838 sterol 24-C-methyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo098020.75Barchart | Table
Spo032310.75Barchart | Table
Spo148710.74Barchart | Table
Spo166270.74Barchart | Table
Spo058460.72Barchart | Table
Spo148490.72Barchart | Table
Spo238320.72Barchart | Table
Spo186890.72Barchart | Table
Spo006060.72Barchart | Table
Spo002570.71Barchart | Table
Spo056010.71Barchart | Table
Spo171100.71Barchart | Table
Spo085400.71Barchart | Table
Spo043240.70Barchart | Table
Spo097140.70Barchart | Table
Spo087680.70Barchart | Table
Spo016950.70Barchart | Table
Spo252890.69Barchart | Table
Spo265440.69Barchart | Table
Spo258860.69Barchart | Table
Spo003710.69Barchart | Table
Spo182350.69Barchart | Table
Spo179290.69Barchart | Table
Spo084340.69Barchart | Table
Spo123940.69Barchart | Table
Spo086160.68Barchart | Table
Spo244140.68Barchart | Table
Spo110350.68Barchart | Table
Spo201610.68Barchart | Table
Spo160730.68Barchart | Table
Spo031050.68Barchart | Table
Spo232920.68Barchart | Table
Spo266360.67Barchart | Table
Spo021450.67Barchart | Table
Spo044540.67Barchart | Table
Spo062620.67Barchart | Table
Spo068590.67Barchart | Table
Spo083590.67Barchart | Table
Spo084880.67Barchart | Table
Spo102390.67Barchart | Table
Spo160390.67Barchart | Table
Spo173710.67Barchart | Table
Spo180940.67Barchart | Table
Spo181590.67Barchart | Table
Spo184490.67Barchart | Table
Spo185240.67Barchart | Table
Spo193270.67Barchart | Table
Spo194770.67Barchart | Table
Spo209680.67Barchart | Table
Spo227400.67Barchart | Table
Spo001700.67Barchart | Table
Spo181030.66Barchart | Table
Spo072250.66Barchart | Table
Spo058490.66Barchart | Table
Spo128490.66Barchart | Table
Spo121520.66Barchart | Table
Spo109370.66Barchart | Table
Spo233450.66Barchart | Table
Spo082660.66Barchart | Table
Spo057880.66Barchart | Table
Spo246350.66Barchart | Table
Spo251810.66Barchart | Table
Spo031270.66Barchart | Table
Spo025250.66Barchart | Table
Spo263580.66Barchart | Table
Spo214750.66Barchart | Table
Spo003580.66Barchart | Table
Spo156040.66Barchart | Table
Spo184340.65Barchart | Table
Spo146970.65Barchart | Table
Spo146510.65Barchart | Table
Spo065010.65Barchart | Table
Spo224370.65Barchart | Table
Spo055470.65Barchart | Table
Spo063430.65Barchart | Table