Spo02099 (gene)

Overview
NameSpo02099
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSerine/arginine-rich splicing factor 4
LocationSpoScf_00424 : 321188 .. 323583 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGCTATGGTGACCGAGGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACCCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTAACGTAATTCAAGTTACTATTGTTTTAAAGATTGTCAATTTTTTTGTCTTGAATCCTCTGCATCTTGGTGCTTCATTGTGAAGATTGTTTTGGTCGTATATCTAAAAACCATTGTATAATATGGCATCGAAAGTTTCAGTACTGGCTCTTTATACTGCTAAAGAAATAAAAGAAGTTGCCCTCTTAAAAATAATTCTTTGATCAAGTTTCTCTTGTCAGTGGTTTCTGCTGCTTTTTATTCGATGTGAATGAGGGGAATTTCCTCCTTGTGACTTGTGATACGGCAAGTCGAGGGGGTCTTGAAAAGGTTCCTTAATCTTTATTGATTTATATATGTTCTTAATGAAAGTATTTGTTCGAGAGTGTTGCAACCTGCATGTGTCGTGTGGCTTAACTAAAATGTCTTGTTGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGGAATTGGTGGTCAGAGTAGAAACCAAGACACAATTTATGTGGTTGTTACTTCATTTTTCTTGTTAGTGTCATTTTTCTACCTTCCAACAGCAAGTTTTTTTGCATTCACCATACTGGTTGTGGAGACAGCTGTTAAAAGTTAAATAAGCTAAATTACTACTCCCTCTGACCCTTTCTGATTGCCCTATACACCAAAGTTCACTTTATTAACACTTGGACTCCTTTTTTATTGCCCTATACACCAAAGTTCACTTTATTAACACTTGGACAAGGAAAATTACATATGGGTTGATATTTTGTCCTTAAAATTACCATATAAGCTATGGGCAAACTCAAAAACAAAAAGGGACGCAGTATCAAATTTTAGATTAAGATGAAGCAGCTGTTACTCGATAGTTGGTTGCATGATTCTGTCTCATTATAGATGTTCCTCACCTATTTTTCGCATTACTTGTTTTCAAATGTACCTTACTAAATGTAACTACATGTTATTGATGTGCTGAGTTTGTTTTGTTGGTCATTCAGGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTTGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGGTCTTAATTTAATATTTTCCCTGCATAGTTTATATTATTATTACATTTATGTTGTGAGTTTCTCTAAAGCTGCCTCCTGCTTTTTTCCCCTCACAAAACCTCTTGGGATTTTACCATCAGTTTGCCACTATGCATCAACACTACTTGTGAAAATGTAGAAGAGATATAAAATAATCTCACCCTTACCATGCTGGTTGTAATTTGAAATACATCTCTTACTCTTGACCTATAAAGAGCTTGTTTTGGCGATTATTTAGTGCATGCCCCCTGCCTCCCACCTCCATCCAGAATCCCAGAGAAATAGAAATTGTAGACCAGTGTTATCTAATATGTTCGTTTCTCTTCGTACAGCGTCCTGAGTACACGCATATTATGTATTAGTATTATGGAATTGAAGTGTATAATCAAGTAGCGAATTGCGTGTTCATACTCATACCATGTACTGAAGTGTGCTGCGTATGGTAACACAGAGTTTTAACAATAATAATCACATCTTTGAAAGAGTAAAAACTTTTGAGGTGGTTTGCTTTGATAAATATATGTTTGCTTGTAGCTAGTGAATCATGTTTGATGTCTTTTAGCAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGGTGCGCCATTCATTCTTAGCATATTTCTTGCTACTGCAATTTTATTATGTTGTGAGCATTAGTTTAATCTGGCTGGAAATGGTAGGAAGGGTTTTTCTTTTTGGCTCAGGCATTATATATTATTAGGGTAAATGTTTCGAATACATTAAAACTAAATGGTTGTTAGTTTTCCCCTCCTGTTTCACATTCGGTCTCGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACCGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAACGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCATAG

mRNA sequence

ATGCCTCGCTATGGTGACCGAGGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACCCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGGAATTGGTGGTCAGAGTAGAAACCAAGACACAATTTATGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTTGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGTTTTCCCCTCCTGTTTCACATTCGGTCTCGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACCGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAACGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCATAG

Coding sequence (CDS)

ATGCCTCGCTATGGTGACCGAGGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACCCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGGAATTGGTGGTCAGAGTAGAAACCAAGACACAATTTATGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTTGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGTTTTCCCCTCCTGTTTCACATTCGGTCTCGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACCGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAACGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCATAG

Protein sequence

MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMVALGIGGQSRNQDTIYGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02099.1Spo02099.1mRNA


Homology
[Close]
BLAST of Spo02099.1 vs. NCBI nr
Match: gi|902162856|gb|KNA06745.1| (hypothetical protein SOVF_178190 isoform B [Spinacia oleracea])

HSP 1 Score: 479.6 bits (1233), Expect = 3.400e-132
Identity = 246/248 (99.19%), Postives = 246/248 (99.19%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV
Sbjct: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60

Query: 61  ALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120
           ALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA
Sbjct: 61  ALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSR 180
           GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYS SPSPRRRSASPRRGRSRSRSFSRSR
Sbjct: 121 GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSLSPSPRRRSASPRRGRSRSRSFSRSR 180

Query: 181 SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS 240
           SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS
Sbjct: 181 SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS 240

Query: 241 PEGRGRSS 248
           PEGRGRSS
Sbjct: 241 PEGRGRSS 248
[Close]
BLAST of Spo02099.1 vs. NCBI nr
Match: gi|902162857|gb|KNA06746.1| (hypothetical protein SOVF_178190 isoform C [Spinacia oleracea])

HSP 1 Score: 474.9 bits (1221), Expect = 8.300e-131
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV
Sbjct: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60

Query: 61  ALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120
           ALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA
Sbjct: 61  ALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRRRSASPRRGRSRSRSFSRS 180
           GDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASPRRGRSRSRSFSRS
Sbjct: 121 GDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSLSPSPRRRSASPRRGRSRSRSFSRS 180

Query: 181 RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER 240
           RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER
Sbjct: 181 RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER 240

Query: 241 SPEGRGRSS 248
           SPEGRGRSS
Sbjct: 241 SPEGRGRSS 249
[Close]
BLAST of Spo02099.1 vs. NCBI nr
Match: gi|902162855|gb|KNA06744.1| (hypothetical protein SOVF_178190 isoform A [Spinacia oleracea])

HSP 1 Score: 379.0 bits (972), Expect = 6.200e-102
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 1 

		  

Query: 48  GFCLALEVYGGMVALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFN 107
           GFCLALEVYGGMVALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFN
Sbjct: 42  GFCLALEVYGGMVALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFN 101

Query: 108 CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRRRSASP 167
           CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASP
Sbjct: 102 CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSLSPSPRRRSASP 161

Query: 168 RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT 227
           RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT
Sbjct: 162 RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT 221

Query: 228 SRGRKRSPTPDERSPEGRGRSS 248
           SRGRKRSPTPDERSPEGRGRSS
Sbjct: 222 SRGRKRSPTPDERSPEGRGRSS 243
[Close]
BLAST of Spo02099.1 vs. NCBI nr
Match: gi|902235700|gb|KNA24047.1| (hypothetical protein SOVF_019420 isoform C [Spinacia oleracea])

HSP 1 Score: 374.4 bits (960), Expect = 1.500e-100
Identity = 212/270 (78.52%), Postives = 217/270 (80.37%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDR--------DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCL- 60
           MPRYGDRGDRGDR        DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR     + 
Sbjct: 1   MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRVRDVDMK 60

Query: 61  ---ALEVYGGM-----VALGIGGQSRNQDTIY------GPRGPGGSRESRESRDFGGRGP 120
              A   Y            + G+  +   I       GPRGPGGSRESRESRDFGGRGP
Sbjct: 61  RDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGP 120

Query: 121 TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPS 180
           TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYS SPS
Sbjct: 121 TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSLSPS 180

Query: 181 PRRRSASPRRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPK 240
           PRRRSASPRRGRSRSRSFSRSRSYS       +SRSPPKKEREVERTDKSMSPRPSRSPK
Sbjct: 181 PRRRSASPRRGRSRSRSFSRSRSYS-------QSRSPPKKEREVERTDKSMSPRPSRSPK 240

Query: 241 RQKGSPVTSRGRKRSPTPDERSPEGRGRSS 248
           RQKGSPVTSRGRKRSPTPDERSPEGRGRSS
Sbjct: 241 RQKGSPVTSRGRKRSPTPDERSPEGRGRSS 263
[Close]
BLAST of Spo02099.1 vs. NCBI nr
Match: gi|731318473|ref|XP_010669745.1| (PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 322.4 bits (825), Expect = 6.900e-85
Identity = 189/268 (70.52%), Postives = 203/268 (75.75%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDR----DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCL----A 60
           MPRYGDRGDRGDR    DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR     +    A
Sbjct: 1   MPRYGDRGDRGDRGDRGDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYA 60

Query: 61  LEVYGGM-----VALGIGGQSRNQDTIY------GPRGPGGSRESRESRDFGGRGPTPGS 120
              Y            + G+  +   I       GPRGPGGSR      D+GGRGP PGS
Sbjct: 61  FVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSR------DYGGRGPPPGS 120

Query: 121 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRR 180
           GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPR+R
Sbjct: 121 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRKR 180

Query: 181 SASPRRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPR--PSRSPKRQ 240
           SASPRRGRSRSRSFSRSRSYS       +SRSPPK+ER+VERT++S SPR   SRSPKRQ
Sbjct: 181 SASPRRGRSRSRSFSRSRSYS-------QSRSPPKRERDVERTERSRSPRRSRSRSPKRQ 240

Query: 241 KGSPVTSRGRKRSPTPDERSPEGRGRSS 248
           K SP++SR RKRSP+ DERSPEGR   S
Sbjct: 241 KASPLSSRSRKRSPSADERSPEGRDSPS 255
[Close]
BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHM1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178190 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 2.400e-132
Identity = 246/248 (99.19%), Postives = 246/248 (99.19%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV
Sbjct: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60

Query: 61  ALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120
           ALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA
Sbjct: 61  ALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSR 180
           GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYS SPSPRRRSASPRRGRSRSRSFSRSR
Sbjct: 121 GDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSLSPSPRRRSASPRRGRSRSRSFSRSR 180

Query: 181 SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS 240
           SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS
Sbjct: 181 SYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERS 240

Query: 241 PEGRGRSS 248
           PEGRGRSS
Sbjct: 241 PEGRGRSS 248
[Close]
BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJL2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178190 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 5.800e-131
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV
Sbjct: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60

Query: 61  ALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120
           ALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA
Sbjct: 61  ALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKA 120

Query: 121 GDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRRRSASPRRGRSRSRSFSRS 180
           GDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASPRRGRSRSRSFSRS
Sbjct: 121 GDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSLSPSPRRRSASPRRGRSRSRSFSRS 180

Query: 181 RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER 240
           RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER
Sbjct: 181 RSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDER 240

Query: 241 SPEGRGRSS 248
           SPEGRGRSS
Sbjct: 241 SPEGRGRSS 249
[Close]
BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHN2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178190 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 4.300e-102
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 1 

		  

Query: 48  GFCLALEVYGGMVALGIGGQSRNQDTIY-GPRGPGGSRESRESRDFGGRGPTPGSGRCFN 107
           GFCLALEVYGGMVALGIGGQSRNQDTIY GPRGPGGSRESRESRDFGGRGPTPGSGRCFN
Sbjct: 42  GFCLALEVYGGMVALGIGGQSRNQDTIYVGPRGPGGSRESRESRDFGGRGPTPGSGRCFN 101

Query: 108 CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRRRSASP 167
           CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASP
Sbjct: 102 CGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSLSPSPRRRSASP 161

Query: 168 RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT 227
           RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT
Sbjct: 162 RRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT 221

Query: 228 SRGRKRSPTPDERSPEGRGRSS 248
           SRGRKRSPTPDERSPEGRGRSS
Sbjct: 222 SRGRKRSPTPDERSPEGRGRSS 243
[Close]
BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019420 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.100e-100
Identity = 212/270 (78.52%), Postives = 217/270 (80.37%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDR--------DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCL- 60
           MPRYGDRGDRGDR        DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR     + 
Sbjct: 1   MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRVRDVDMK 60

Query: 61  ---ALEVYGGM-----VALGIGGQSRNQDTIY------GPRGPGGSRESRESRDFGGRGP 120
              A   Y            + G+  +   I       GPRGPGGSRESRESRDFGGRGP
Sbjct: 61  RDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGP 120

Query: 121 TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPS 180
           TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYS SPS
Sbjct: 121 TPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSLSPS 180

Query: 181 PRRRSASPRRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPK 240
           PRRRSASPRRGRSRSRSFSRSRSYS       +SRSPPKKEREVERTDKSMSPRPSRSPK
Sbjct: 181 PRRRSASPRRGRSRSRSFSRSRSYS-------QSRSPPKKEREVERTDKSMSPRPSRSPK 240

Query: 241 RQKGSPVTSRGRKRSPTPDERSPEGRGRSS 248
           RQKGSPVTSRGRKRSPTPDERSPEGRGRSS
Sbjct: 241 RQKGSPVTSRGRKRSPTPDERSPEGRGRSS 263
[Close]
BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZP6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036730 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.200e-83
Identity = 189/269 (70.26%), Postives = 203/269 (75.46%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDR----DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCL----A 60
           MPRYGDRGDRGDR    DRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR     +    A
Sbjct: 1   MPRYGDRGDRGDRGDRGDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYA 60

Query: 61  LEVYGGM-----VALGIGGQSRNQDTIY------GPRGPGGSRESRESRDFGGRGPTPGS 120
              Y            + G+  +   I       GPRGPGGSR      D+GGRGP PGS
Sbjct: 61  FVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSR------DYGGRGPPPGS 120

Query: 121 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRR 180
           GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYSRSPSPR+
Sbjct: 121 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRK 180

Query: 181 RSASPRRGRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPR--PSRSPKR 240
           RSASPRRGRSRSRSFSRSRSYS       +SRSPPK+ER+VERT++S SPR   SRSPKR
Sbjct: 181 RSASPRRGRSRSRSFSRSRSYS-------QSRSPPKRERDVERTERSRSPRRSRSRSPKR 240

Query: 241 QKGSPVTSRGRKRSPTPDERSPEGRGRSS 248
           QK SP++SR RKRSP+ DERSPEGR   S
Sbjct: 241 QKASPLSSRSRKRSPSADERSPEGRDSPS 256
[Close]
BLAST of Spo02099.1 vs. ExPASy Swiss-Prot
Match: RSZ33_ARATH (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.700e-49
Identity = 139/250 (55.60%), Postives = 156/250 (62.40%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRY DR        +G+ TRLYVGRLSSRTRT DL+ LFSRYGR     +  +     V
Sbjct: 1   MPRYDDR--------YGN-TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--AFV 60

Query: 61  ALGIGGQSRNQDTIYGPRGPGGSRES--------RESRDFGGRGPTPGSGRCFNCGIDGH 120
             G    + +       R   GSR +        R SRDF  RGP PG+GRCFNCG+DGH
Sbjct: 61  EFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGH 120

Query: 121 WARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRRSASPRRGRSRS 180
           WARDC AGDWKNKCYRCGERGHIERNC+NSPKKLRR  SYSRSP    RS SPRR RS S
Sbjct: 121 WARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPV---RSRSPRRRRSPS 180

Query: 181 RSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRS 240
           RS SRSRSYS       RSRSP      V R ++S+  R SRSPKR   S ++ R R RS
Sbjct: 181 RSLSRSRSYS-------RSRSP------VRRRERSVEER-SRSPKRMDDS-LSPRARDRS 221

Query: 241 PT-PDERSPE 242
           P   DE SP+
Sbjct: 241 PVLDDEGSPK 221
[Close]
BLAST of Spo02099.1 vs. ExPASy Swiss-Prot
Match: RSZ32_ARATH (Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.700e-46
Identity = 132/251 (52.59%), Postives = 155/251 (61.75%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR-----------FLGF 60
           MPRY DR        +G+ TRLYVGRLSSRTRT DL+ LFSRYGR           F+ F
Sbjct: 1   MPRYDDR--------YGN-TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEF 60

Query: 61  CLALEVYGGMVALGIGGQSRNQDTIYGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGI 120
               +       L       ++ T+   RG       R SRD G RGP PGSGRCFNCG+
Sbjct: 61  SDPRDADDARYYLDGRDFDGSRITVEASRGA-----PRGSRDNGSRGPPPGSGRCFNCGV 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIERNCQN--SPKKLRRGRSYSRSPSPRRRSASPRR 180
           DGHWARDC AGDWKNKCYRCGERGHIERNC+N  SPKK R+G SYSRSP  + RS   RR
Sbjct: 121 DGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSP-VKSRSPRRRR 180

Query: 181 GRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSR 239
             SRSRS+SR RSYS       RSRSP ++E+ VE  D+      SRSPK  + S V+ +
Sbjct: 181 SPSRSRSYSRGRSYS-------RSRSPVRREKSVE--DR------SRSPKAMERS-VSPK 220
[Close]
BLAST of Spo02099.1 vs. ExPASy Swiss-Prot
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.900e-6
Identity = 66/193 (34.20%), Postives = 83/193 (43.01%), Query Frame = 1 

		  

Query: 20  TRLYVGRLSSRTRTHDLDDLFSRYG--------------RFLGFCLALEVYGGMVAL-GI 79
           +R+YVG L  R    +L+D F  +G               FL F    +    + AL G 
Sbjct: 2   SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61

Query: 80  GGQSRNQDTIYGPRGPGGSRESRESRDFGGRGPTPGSG-RCFNCGIDGHWARDCKAGDWK 139
            G    Q    G RG GG R        GGRG   GS  +C+ CG  GH+AR+C+     
Sbjct: 62  NGWRVEQSHNRGERG-GGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRN---- 121

Query: 140 NKCYRCGERGHIERNCQNSPKKLRRGRSYSR-SPSPRRRSASPRRGRSRSRSFSRSRSYS 196
               R G      ++   +P + RR  SY R S SPR RS  P R RS S   +R RSY 
Sbjct: 122 ----RGGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSY- 176
[Close]
BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 196.1 bits (497), Expect = 2.600e-50
Identity = 139/250 (55.60%), Postives = 156/250 (62.40%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMV 60
           MPRY DR        +G+ TRLYVGRLSSRTRT DL+ LFSRYGR     +  +     V
Sbjct: 1   MPRYDDR--------YGN-TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--AFV 60

Query: 61  ALGIGGQSRNQDTIYGPRGPGGSRES--------RESRDFGGRGPTPGSGRCFNCGIDGH 120
             G    + +       R   GSR +        R SRDF  RGP PG+GRCFNCG+DGH
Sbjct: 61  EFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGH 120

Query: 121 WARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRGRSYSRSPSPRRRSASPRRGRSRS 180
           WARDC AGDWKNKCYRCGERGHIERNC+NSPKKLRR  SYSRSP    RS SPRR RS S
Sbjct: 121 WARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPV---RSRSPRRRRSPS 180

Query: 181 RSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRS 240
           RS SRSRSYS       RSRSP      V R ++S+  R SRSPKR   S ++ R R RS
Sbjct: 181 RSLSRSRSYS-------RSRSP------VRRRERSVEER-SRSPKRMDDS-LSPRARDRS 221

Query: 241 PT-PDERSPE 242
           P   DE SP+
Sbjct: 241 PVLDDEGSPK 221
[Close]
BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 186.4 bits (472), Expect = 2.100e-47
Identity = 132/251 (52.59%), Postives = 155/251 (61.75%), Query Frame = 1 

		  

Query: 1   MPRYGDRGDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGR-----------FLGF 60
           MPRY DR        +G+ TRLYVGRLSSRTRT DL+ LFSRYGR           F+ F
Sbjct: 1   MPRYDDR--------YGN-TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEF 60

Query: 61  CLALEVYGGMVALGIGGQSRNQDTIYGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGI 120
               +       L       ++ T+   RG       R SRD G RGP PGSGRCFNCG+
Sbjct: 61  SDPRDADDARYYLDGRDFDGSRITVEASRGA-----PRGSRDNGSRGPPPGSGRCFNCGV 120

Query: 121 DGHWARDCKAGDWKNKCYRCGERGHIERNCQN--SPKKLRRGRSYSRSPSPRRRSASPRR 180
           DGHWARDC AGDWKNKCYRCGERGHIERNC+N  SPKK R+G SYSRSP  + RS   RR
Sbjct: 121 DGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSP-VKSRSPRRRR 180

Query: 181 GRSRSRSFSRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSR 239
             SRSRS+SR RSYS       RSRSP ++E+ VE  D+      SRSPK  + S V+ +
Sbjct: 181 SPSRSRSYSRGRSYS-------RSRSPVRREKSVE--DR------SRSPKAMERS-VSPK 220
[Close]
BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 53.9 bits (128), Expect = 1.600e-7
Identity = 66/193 (34.20%), Postives = 83/193 (43.01%), Query Frame = 1 

		  

Query: 20  TRLYVGRLSSRTRTHDLDDLFSRYG--------------RFLGFCLALEVYGGMVAL-GI 79
           +R+YVG L  R    +L+D F  +G               FL F    +    + AL G 
Sbjct: 2   SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61

Query: 80  GGQSRNQDTIYGPRGPGGSRESRESRDFGGRGPTPGSG-RCFNCGIDGHWARDCKAGDWK 139
            G    Q    G RG GG R        GGRG   GS  +C+ CG  GH+AR+C+     
Sbjct: 62  NGWRVEQSHNRGERG-GGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRN---- 121

Query: 140 NKCYRCGERGHIERNCQNSPKKLRRGRSYSR-SPSPRRRSASPRRGRSRSRSFSRSRSYS 196
               R G      ++   +P + RR  SY R S SPR RS  P R RS S   +R RSY 
Sbjct: 122 ----RGGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSY- 176
[Close]
BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Match: AT1G23860.1 (RS-containing zinc finger protein 21)

HSP 1 Score: 51.2 bits (121), Expect = 1.000e-6
Identity = 67/204 (32.84%), Postives = 83/204 (40.69%), Query Frame = 1 

		  

Query: 20  TRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMVALGIGGQSRNQDTIYGPRG 79
           TR+YVG L  R    +L+D F  +G      +A     G   L    +    D I     
Sbjct: 2   TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-PGYAFLEFDDERDALDAISALDR 61

Query: 80  PGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 139
             G R     +D GGRG   G GR              + G   +KCY CGE GH  R C
Sbjct: 62  KNGWRVELSHKDKGGRGG--GGGR--------------RGGIEDSKCYECGELGHFAREC 121

Query: 140 QNSPKKLRRGRSYSRSPSPRRRSASPRRGRSR-------SRSFSRSRSYSFPLLFHIRSR 199
           +     +RR     RSPSPRRR  SP  G +R        RS  R RS + P      SR
Sbjct: 122 RRGRGSVRR-----RSPSPRRR-RSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSR 181

Query: 200 SPPKKEREVERTDKSMSPRPSRSP 217
           SPP +    +   +  SP   RSP
Sbjct: 182 SPPYRGSRRDSPRRRDSPYGRRSP 182
[Close]
BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.200e-6
Identity = 29/89 (32.58%), Postives = 45/89 (50.56%), Query Frame = 1 

		  

Query: 83  SRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDC--------------KAGDWKNKCYR 142
           +R+     D G    T  +G CF CG  GHW+RDC              K+     +CY+
Sbjct: 249 ARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYK 308

Query: 143 CGERGHIERNC--QNSPKKLRRGRSYSRS 156
           CG++GH  R+C  Q+S ++ + G++ S S
Sbjct: 309 CGKQGHWSRDCTGQSSNQQFQSGQAKSTS 337
The following BLAST results are available for this feature:
BLAST of Spo02099.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902162856|gb|KNA06745.1|3.4e-13299.1hypothetical protein SOVF_1781... [more]
gi|902162857|gb|KNA06746.1|8.3e-13198.8hypothetical protein SOVF_1781... [more]
gi|902162855|gb|KNA06744.1|6.2e-10298.5hypothetical protein SOVF_1781... [more]
gi|902235700|gb|KNA24047.1|1.5e-10078.5hypothetical protein SOVF_0194... [more]
gi|731318473|ref|XP_010669745.1|6.9e-8570.5PREDICTED: serine/arginine-ric... [more]
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BLAST of Spo02099.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QHM1_SPIOL2.4e-13299.1Uncharacterized protein OS=Spi... [more]
A0A0K9QJL2_SPIOL5.8e-13198.8Uncharacterized protein OS=Spi... [more]
A0A0K9QHN2_SPIOL4.3e-10298.5Uncharacterized protein OS=Spi... [more]
A0A0K9RYU2_SPIOL1.1e-10078.5Uncharacterized protein OS=Spi... [more]
A0A0J8CZP6_BETVU1.2e-8370.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo02099.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RSZ33_ARATH4.7e-4955.6Serine/arginine-rich splicing ... [more]
RSZ32_ARATH3.7e-4652.5Serine/arginine-rich splicing ... [more]
RSZ22_ARATH2.9e-634.2Serine/arginine-rich splicing ... [more]
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BLAST of Spo02099.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G37340.12.6e-5055.6arginine/serine-rich zinc knuc... [more]
AT3G53500.22.1e-4752.5RNA-binding (RRM/RBD/RNP motif... [more]
AT4G31580.11.6e-734.2serine/arginine-rich 22[more]
AT1G23860.11.0e-632.8RS-containing zinc finger prot... [more]
AT3G42860.15.2e-632.5zinc knuckle (CCHC-type) famil... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 103..141
score: 1.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 124..140
score: 5.3E-5coord: 103..118
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 125..141
score: 0.001coord: 103..119
score: 2.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 103..118
score: 10.147coord: 125..141
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 94..142
score: 1.37
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 9..54
score: 4.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 8..54
score: 2.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression