Spo02106 (gene)

Overview
NameSpo02106
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00424 : 180027 .. 180491 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCATATGATTTTAAGTTAGAAACTCAAATCCGAACCAAAAAAGCCGAACTGCCAATAGTACTCCGTATAATTTTGGTGAATCTGCAATTACATGGTTACACCCCTCGCTGCCAATTGCCATACCGCAAAACTCTCCATACGCACAGCCTCTAAGACCAAGACCCGACTCGACCTAGTCCCCGCCGAGCTCAATCGCTCTTCCCTCCCATTACACCATTCTCCCTCGCTTCTTCTTCCCCCACTCTCTTCAATTCTCTACTTCCAATTACTATTTTTTCTCTATATTTTTTTGTTTTTATTAATTTCTGCCATTAATTATCGAATTCAAAATCACCAATTTTTTTCTGTGTTTATTTCTGGATTTTATTTTTGTTTTTACTCATTTGTTTCAATTCGGATTCCTGCCTTTTCGTGTTCCACCCTTCAATTCGACAAACCCAACTTTTACCCCAGCATTAATTGA

mRNA sequence

TATCATATGATTTTAAGTTAGAAACTCAAATCCGAACCAAAAAAGCCGAACTGCCAATAGTACTCCGTATAATTTTGGTGAATCTGCAATTACATGGTTACACCCCTCGCTGCCAATTGCCATACCGCAAAACTCTCCATACGCACAGCCTCTAAGACCAAGACCCGACTCGACCTAGTCCCCGCCGAGCTCAATCGCTCTTCCCTCCCATTACACCATTCTCCCTCGCTTCTTCTTCCCCCACTCTCTTCAATTCTCTACTTCCAATTACTATTTTTTCTCTATATTTTTTTGTTTTTATTAATTTCTGCCATTAATTATCGAATTCAAAATCACCAATTTTTTTCTGTGTTTATTTCTGGATTTTATTTTTGTTTTTACTCATTTGTTTCAATTCGGATTCCTGCCTTTTCGTGTTCCACCCTTCAATTCGACAAACCCAACTTTTACCCCAGCATTAATTGA

Coding sequence (CDS)

ATGGTTACACCCCTCGCTGCCAATTGCCATACCGCAAAACTCTCCATACGCACAGCCTCTAAGACCAAGACCCGACTCGACCTAGTCCCCGCCGAGCTCAATCGCTCTTCCCTCCCATTACACCATTCTCCCTCGCTTCTTCTTCCCCCACTCTCTTCAATTCTCTACTTCCAATTACTATTTTTTCTCTATATTTTTTTGTTTTTATTAATTTCTGCCATTAATTATCGAATTCAAAATCACCAATTTTTTTCTGTGTTTATTTCTGGATTTTATTTTTGTTTTTACTCATTTGTTTCAATTCGGATTCCTGCCTTTTCGTGTTCCACCCTTCAATTCGACAAACCCAACTTTTACCCCAGCATTAATTGA

Protein sequence

MVTPLAANCHTAKLSIRTASKTKTRLDLVPAELNRSSLPLHHSPSLLLPPLSSILYFQLLFFLYIFLFLLISAINYRIQNHQFFSVFISGFYFCFYSFVSIRIPAFSCSTLQFDKPNFYPSIN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02106.1Spo02106.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo02106.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02106.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02106.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02106.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 53..101
score: 2.
NoneNo IPR availableunknownSSF81324Voltage-gated potassium channelscoord: 50..101
score: 6.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009414 response to water deprivation
biological_process GO:0006979 response to oxidative stress
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0071554 cell wall organization or biogenesis
biological_process GO:0009963 positive regulation of flavonoid biosynthetic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0009658 chloroplast organization
biological_process GO:0006457 protein folding
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0043621 protein self-association
molecular_function GO:0003756 protein disulfide isomerase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo233320.78Barchart | Table
Spo084070.78Barchart | Table
Spo108350.77Barchart | Table
Spo250080.76Barchart | Table
Spo116880.76Barchart | Table
Spo139810.75Barchart | Table
Spo238530.74Barchart | Table
Spo237450.74Barchart | Table
Spo233820.74Barchart | Table
Spo104910.73Barchart | Table
Spo251960.73Barchart | Table
Spo011550.73Barchart | Table
Spo012520.73Barchart | Table
Spo026650.73Barchart | Table
Spo053070.73Barchart | Table
Spo182230.72Barchart | Table
Spo002050.72Barchart | Table
Spo126090.72Barchart | Table
Spo259870.72Barchart | Table
Spo016280.72Barchart | Table
Spo097690.72Barchart | Table
Spo269750.71Barchart | Table
Spo216360.71Barchart | Table
Spo152220.71Barchart | Table
Spo259850.71Barchart | Table
Spo095540.71Barchart | Table
Spo257170.71Barchart | Table
Spo244300.70Barchart | Table
Spo051250.70Barchart | Table
Spo075480.70Barchart | Table
Spo083510.70Barchart | Table
Spo146300.70Barchart | Table
Spo168440.70Barchart | Table
Spo175780.70Barchart | Table
Spo193830.70Barchart | Table
Spo266100.70Barchart | Table
Spo273640.70Barchart | Table
Spo013280.69Barchart | Table
Spo255730.69Barchart | Table
Spo126820.69Barchart | Table
Spo220040.69Barchart | Table
Spo216000.69Barchart | Table
Spo069530.69Barchart | Table
Spo209300.69Barchart | Table
Spo200500.69Barchart | Table
Spo209120.69Barchart | Table
Spo240460.69Barchart | Table
Spo115580.69Barchart | Table
Spo221670.68Barchart | Table
Spo211550.68Barchart | Table
Spo153170.68Barchart | Table
Spo201060.68Barchart | Table
Spo004980.68Barchart | Table
Spo116680.68Barchart | Table
Spo084780.68Barchart | Table
Spo029180.68Barchart | Table
Spo010540.68Barchart | Table
Spo129760.68Barchart | Table
Spo244250.68Barchart | Table
Spo243240.68Barchart | Table
Spo137830.68Barchart | Table
Spo087130.68Barchart | Table
Spo282650.68Barchart | Table
Spo168010.67Barchart | Table
Spo139050.67Barchart | Table
Spo159950.67Barchart | Table
Spo161860.67Barchart | Table
Spo162400.67Barchart | Table
Spo266970.67Barchart | Table
Spo169960.67Barchart | Table
Spo191230.67Barchart | Table
Spo193410.67Barchart | Table
Spo026960.67Barchart | Table
Spo226940.67Barchart | Table
Spo012810.67Barchart | Table
Spo237570.67Barchart | Table
Spo010570.67Barchart | Table
Spo005260.67Barchart | Table
Spo270810.66Barchart | Table
Spo158430.66Barchart | Table
Spo154990.66Barchart | Table
Spo041230.66Barchart | Table
Spo097980.66Barchart | Table
Spo246230.66Barchart | Table
Spo129650.66Barchart | Table
Spo085910.66Barchart | Table
Spo002140.66Barchart | Table
Spo115240.66Barchart | Table
Spo192170.66Barchart | Table
Spo002560.66Barchart | Table
Spo162930.66Barchart | Table
Spo033620.66Barchart | Table
Spo151300.66Barchart | Table
Spo090080.66Barchart | Table
Spo216600.66Barchart | Table
Spo218330.66Barchart | Table
Spo149140.66Barchart | Table
Spo094340.66Barchart | Table
Spo025730.66Barchart | Table
Spo143540.66Barchart | Table
Spo089350.66Barchart | Table
Spo109650.66Barchart | Table
Spo011870.66Barchart | Table
Spo152660.65Barchart | Table
Spo169600.65Barchart | Table
Spo246570.65Barchart | Table
Spo176100.65Barchart | Table
Spo006770.65Barchart | Table
Spo047250.65Barchart | Table
Spo132810.65Barchart | Table
Spo147890.65Barchart | Table
Spo131610.65Barchart | Table
Spo177260.65Barchart | Table