Spo02202 (gene) | SpinachBase

Overview


Name	Spo02202
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 4323770 .. 4324295 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGGAAGAGAGATGATGCAGAGTTGTAGCTCTACTCGCCAGAAGGTGAGCTGGTCAGATCTCCCTCAACCATTACTTCAATCCATCGTCAAATTACTGGGAAATGATCTTAACAGCTTGCGCCGTTTCCGATCAGTCTGCAACAATTGGCGCCAATCAACTGCTTATCCTGTGCCGCCTTCCGTCAACAACCACATCGAGTTTTCTTCCTCCGTCATCCTCCTCCGCCGTGGTGGCTCAGACTCTATCTCCACCCCGTGGATGGTGTTTTCCGTCAATATCGCCCCAGGTATTACCTCCTTTTCCACCCTTTCTCCGGTACTCCTTTCATTAATCTTCCCCAAAACCTCAGTCACACTTCAGAATTTTATACAGCTACAACTATGTACCATAAGGGTGATTCAATTACCAGTGAGATTGTCAGCCTGTCCCCTCTCTTCAGCCCTAAAAGAGTTGCATTGCGGAATGAACCAACTGATAAGTGTGACGACATTGTGCATTTTAGGCAGTTTGATTACTCTGTAG

mRNA sequence

GTGAGGAAGAGAGATGATGCAGAGTTGTAGCTCTACTCGCCAGAAGGTGAGCTGGTCAGATCTCCCTCAACCATTACTTCAATCCATCGTCAAATTACTGGGAAATGATCTTAACAGCTTGCGCCGTTTCCGATCAGTCTGCAACAATTGGCGCCAATCAACTGCTTATCCTGTGCCGCCTTCCGTCAACAACCACATCGAGTTTTCTTCCTCCGTCATCCTCCTCCGCCGTGGTGGCTCAGACTCTATCTCCACCCCGTGGATGGTGTTTTCCGTCAATATCGCCCCAGGTATTACCTCCTTTTCCACCCTTTCTCCGGTACTCCTTTCATTAATCTTCCCCAAAACCTCAGTCACACTTCAGAATTTTATACAGCTACAACTATGTACCATAAGGGTGATTCAATTACCAGTGAGATTGTCAGCCTGTCCCCTCTCTTCAGCCCTAAAAGAGTTGCATTGCGGAATGAACCAACTGATAAGTGTGACGACATTGTGCATTTTAGGCAGTTTGATTACTCTGTAG

Coding sequence (CDS)

ATGATGCAGAGTTGTAGCTCTACTCGCCAGAAGGTGAGCTGGTCAGATCTCCCTCAACCATTACTTCAATCCATCGTCAAATTACTGGGAAATGATCTTAACAGCTTGCGCCGTTTCCGATCAGTCTGCAACAATTGGCGCCAATCAACTGCTTATCCTGTGCCGCCTTCCGTCAACAACCACATCGAGTTTTCTTCCTCCGTCATCCTCCTCCGCCGTGGTGGCTCAGACTCTATCTCCACCCCGTGGATGGTGTTTTCCGTCAATATCGCCCCAGGTATTACCTCCTTTTCCACCCTTTCTCCGGTACTCCTTTCATTAATCTTCCCCAAAACCTCAGTCACACTTCAGAATTTTATACAGCTACAACTATGTACCATAAGGGTGATTCAATTACCAGTGAGATTGTCAGCCTGTCCCCTCTCTTCAGCCCTAAAAGAGTTGCATTGCGGAATGAACCAACTGATAAGTGTGACGACATTGTGCATTTTAGGCAGTTTGATTACTCTGTAG

Protein sequence

MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNNHIEFSSSVILLRRGGSDSISTPWMVFSVNIAPGITSFSTLSPVLLSLIFPKTSVTLQNFIQLQLCTIRVIQLPVRLSACPLSSALKELHCGMNQLISVTTLCILGSLITL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02202.1	Spo02202.1	mRNA

Homology

[Close]

BLAST of Spo02202.1 vs. NCBI nr
Match: gi|902222838|gb|KNA19294.1| (hypothetical protein SOVF_062770 [Spinacia oleracea])

HSP 1 Score: 192.2 bits (487), Expect = 7.400e-46
Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 1


		  
Query: 1   MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN 60
           MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN
Sbjct: 1   MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN 60

Query: 61  HIEFSSSVILLRRGGSDSISTPWMVFSVNIAPGITSFS-----TLSPVLLSLIFPKTSVT 119
           HIEFSSSVILLRRGGSDSISTPWMVFSVNIAP  T +      T   V LS +F    V 
Sbjct: 61  HIEFSSSVILLRRGGSDSISTPWMVFSVNIAPATTMYHKGDSITSEIVSLSPLFSPKRVA 120

[Close]

BLAST of Spo02202.1 vs. NCBI nr
Match: gi|902222832|gb|KNA19288.1| (hypothetical protein SOVF_062720 [Spinacia oleracea])

HSP 1 Score: 140.6 bits (353), Expect = 2.600e-30
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = 1


		  
Query: 2  MQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNNH 61
          MQ+CS  R+KVSWSDLPQ LLQ IVK LGND++SLRRFRSVC NWRQSTAY VPPSVNN+
Sbjct: 1  MQNCSYNRRKVSWSDLPQTLLQCIVKFLGNDVDSLRRFRSVCKNWRQSTAYSVPPSVNNN 60

Query: 62 IEFSSSVILLR-RGGSDSISTPWMVFSVNIAPGITSF 98
            FSSSVILLR RG S + STPWMVFSVNIA G T F
Sbjct: 61 -GFSSSVILLRPRGDSAANSTPWMVFSVNIAQGNTLF 96

[Close]

BLAST of Spo02202.1 vs. NCBI nr
Match: gi|902222830|gb|KNA19286.1| (hypothetical protein SOVF_062700 [Spinacia oleracea])

HSP 1 Score: 112.1 bits (279), Expect = 9.800e-22
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 1


		  
Query: 2  MQSCSSTR--QKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVN 61
          MQ+ S TR  ++++WSDLP+ +LQSI K LG D++SLR FRSVC  WRQSTAY VP SV+
Sbjct: 1  MQNGSHTRPRRRLNWSDLPKQVLQSIAKSLGTDIDSLRSFRSVCKKWRQSTAYSVPTSVH 60

Query: 62 NHIEFSSSVILLR-RGGSDSISTPWMVFSVNIAPGITSF 98
            +  SSSVILLR RGGS SISTPWMV  V IA GIT F
Sbjct: 61 KGL-LSSSVILLRPRGGSASISTPWMVSVVQIANGITLF 98

[Close]

BLAST of Spo02202.1 vs. NCBI nr
Match: gi|870858621|gb|KMT10109.1| (hypothetical protein BVRB_5g118720 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.4 bits (189), Expect = 2.700e-11
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 1


		  
Query: 7  STRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPV-----PPSVNNH 66
          S+R+K+SWS LP  LL+SI K L N+ N    FR+VC +WR ST+  +       S  ++
Sbjct: 3  SSRRKISWSKLPLELLRSIAKFLDNNSNDFTNFRAVCKSWRHSTSISILLPFCDYSTPSY 62

Query: 67 IEFSSSVILLRRGGSDSISTPWMVFSVNIAPG 94
            FSS VILLR   + S STPWMV  V I  G
Sbjct: 63 NLFSSFVILLRSVDTSSSSTPWMVSVVEITKG 94

[Close]

BLAST of Spo02202.1 vs. NCBI nr
Match: gi|902222835|gb|KNA19291.1| (hypothetical protein SOVF_062740 isoform B [Spinacia oleracea])

HSP 1 Score: 63.2 bits (152), Expect = 5.200e-7
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1


		  
Query: 9  RQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYP--VPPSVNNHIEFSS 68
          RQKV WS+LP  +L+SI   L  +   ++ FRSVC  WR++TA    +P  + +   FSS
Sbjct: 5  RQKVIWSELPVEVLRSIAIHLKGNRKDVQNFRSVCKKWRRATAISALLPFVMGSETLFSS 64

Query: 69 SVILLRRGGSDSISTPWMVFSVNIAPG 94
          SV L+R   S    TPW+V SV I  G
Sbjct: 65 SVYLIRPPVS---GTPWIVASVEITKG 88

[Close]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK46_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062770 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.200e-46
Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 1


		  
Query: 1   MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN 60
           MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN
Sbjct: 1   MMQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNN 60

Query: 61  HIEFSSSVILLRRGGSDSISTPWMVFSVNIAPGITSFS-----TLSPVLLSLIFPKTSVT 119
           HIEFSSSVILLRRGGSDSISTPWMVFSVNIAP  T +      T   V LS +F    V 
Sbjct: 61  HIEFSSSVILLRRGGSDSISTPWMVFSVNIAPATTMYHKGDSITSEIVSLSPLFSPKRVA 120

[Close]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIG4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062720 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.800e-30
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = 1


		  
Query: 2  MQSCSSTRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVNNH 61
          MQ+CS  R+KVSWSDLPQ LLQ IVK LGND++SLRRFRSVC NWRQSTAY VPPSVNN+
Sbjct: 1  MQNCSYNRRKVSWSDLPQTLLQCIVKFLGNDVDSLRRFRSVCKNWRQSTAYSVPPSVNNN 60

Query: 62 IEFSSSVILLR-RGGSDSISTPWMVFSVNIAPGITSF 98
            FSSSVILLR RG S + STPWMVFSVNIA G T F
Sbjct: 61 -GFSSSVILLRPRGDSAANSTPWMVFSVNIAQGNTLF 96

[Close]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIE7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062700 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.800e-22
Identity = 64/99 (64.65%), Postives = 75/99 (75.76%), Query Frame = 1


		  
Query: 2  MQSCSSTR--QKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPVPPSVN 61
          MQ+ S TR  ++++WSDLP+ +LQSI K LG D++SLR FRSVC  WRQSTAY VP SV+
Sbjct: 1  MQNGSHTRPRRRLNWSDLPKQVLQSIAKSLGTDIDSLRSFRSVCKKWRQSTAYSVPTSVH 60

Query: 62 NHIEFSSSVILLR-RGGSDSISTPWMVFSVNIAPGITSF 98
            +  SSSVILLR RGGS SISTPWMV  V IA GIT F
Sbjct: 61 KGL-LSSSVILLRPRGGSASISTPWMVSVVQIANGITLF 98

[Close]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CD25_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118720 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.900e-11
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 1


		  
Query: 7  STRQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYPV-----PPSVNNH 66
          S+R+K+SWS LP  LL+SI K L N+ N    FR+VC +WR ST+  +       S  ++
Sbjct: 3  SSRRKISWSKLPLELLRSIAKFLDNNSNDFTNFRAVCKSWRHSTSISILLPFCDYSTPSY 62

Query: 67 IEFSSSVILLRRGGSDSISTPWMVFSVNIAPG 94
            FSS VILLR   + S STPWMV  V I  G
Sbjct: 63 NLFSSFVILLRSVDTSSSSTPWMVSVVEITKG 94

[Close]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIF2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062740 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.600e-7
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1


		  
Query: 9  RQKVSWSDLPQPLLQSIVKLLGNDLNSLRRFRSVCNNWRQSTAYP--VPPSVNNHIEFSS 68
          RQKV WS+LP  +L+SI   L  +   ++ FRSVC  WR++TA    +P  + +   FSS
Sbjct: 5  RQKVIWSELPVEVLRSIAIHLKGNRKDVQNFRSVCKKWRRATAISALLPFVMGSETLFSS 64

Query: 69 SVILLRRGGSDSISTPWMVFSVNIAPG 94
          SV L+R   S    TPW+V SV I  G
Sbjct: 65 SVYLIRPPVS---GTPWIVASVEITKG 88

The following BLAST results are available for this feature:

BLAST of Spo02202.1 vs. NCBI nr
BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
BLAST of Spo02202.1 vs. ExPASy Swiss-Prot
BLAST of Spo02202.1 vs. TAIR (Arabidopsis)

BLAST of Spo02202.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902222838\|gb\|KNA19294.1\|	7.4e-46	82.1	hypothetical protein SOVF_0627...	[more]
gi\|902222832\|gb\|KNA19288.1\|	2.6e-30	77.3	hypothetical protein SOVF_0627...	[more]
gi\|902222830\|gb\|KNA19286.1\|	9.8e-22	64.6	hypothetical protein SOVF_0627...	[more]
gi\|870858621\|gb\|KMT10109.1\|	2.7e-11	46.7	hypothetical protein BVRB_5g11...	[more]
gi\|902222835\|gb\|KNA19291.1\|	5.2e-7	43.6	hypothetical protein SOVF_0627...	[more]

BLAST of Spo02202.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RK46_SPIOL	5.2e-46	82.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RIG4_SPIOL	1.8e-30	77.3	Uncharacterized protein OS=Spi...	[more]
A0A0K9RIE7_SPIOL	6.8e-22	64.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8CD25_BETVU	1.9e-11	46.7	Uncharacterized protein OS=Bet...	[more]
A0A0K9RIF2_SPIOL	3.6e-7	43.6	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo02202.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo02202.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 3..48 score: 3.
None	No IPR available	GENE3D	1.20.1280.50		coord: 9..48 score: 2.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03474	0.69	Barchart \| Table