Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTATAAAGTCACTCCTCCAAACTGAAAAACTCCCCTCACTCTTTTCCCAACTCCTTTTCTTTCTCTCCCTCTCTCTTTCCTTTCCATTAAAACCACCTACTTTCTCTCTCCTCTTTCTCTCTCCCCCTCTACAAAAATTCAGCACATCCGTGGGCAGTTTCACAGAAACAAAAAAATAAAAATAAATTAAAAAAGCTTACCTCAACTGAAACTGGATAAAACTCCACACCTGCGCAATTTATGGGCTTTACTCATTAACCCACCAACCATTTTTTAATACTTCATCCAAAATTTATTTTATTTAATTTAAAAAAATATATGAAAATGAGTGTTTATTTCTTTATTGGGATCAGGAAAACTAAATTCTGCTGCAACTGATCAACAACAACAGCAGCAGCAGTTAACAGCAGCAGATTCACTATCAGTAGTGTGATTAGTAGCAGAATTAAGCTCTTAAAATCTGTAATCACATGGGTTTTGCATGTGGATTTTGGTGGTCCCTTTTTATTCTTTGATCTTCATTTCTTTTGATTATTAAAGTTTTCATCTTTTAAGCAAGTTACCCATTCATTTTTTTTTTCTGGGTTTGTTCTGCTGGGTTTTAGTCTTCCTACTTTGTCTGTTTCTTTGAGTTTGTTGCTCACAGATCCAAAGTTTTGATCTTTCAAGGAAAAAGTTTGGATCTTTATCAAAAAGATCATATTTTTTAGGGTGTTCAAAACTTCTCCAATTTCCCAATATTGAGGTAATTTTAGTTTATTTATTTATTTATGAATTAACTCCCTTTTATATATACTCCAATTTACAATATATTGATTGTGTTTTGGGTGTTTATGTTATTTTTTGAAGGTAATGCTGAGGAAAAGAACAAGACAAGTGACAAGTACACAAGGGATAATTAGTGATCATAGCAATAGTTCATGGATTCCACCTGAGAAATCCACAAAACCCACTTCATTTTTCTTAAATTCTCCTAGATTTTTCAAGAGTTTGTTCTCTTCTTCTTCATCTTCTTCGAATTCACCTTCACCTTCACCTTCATCTAGCTTGAATGATCCAATAATGAGTCCAACTTCAATACTTGACAGTAAAGCATTCTCTGCTTTAGCCAACTCTTTCTGGGTTGTTGACAACAACACCAACAACAACAACAACAGCAACAAAAACTCAAAAACTTTCTCATGGGAACAACCCAACAACACAAAGGGGATTGGCCTTGCTTTAATTGATGAAAACAGTTCTGAATCCAACAACAACAACAACATCACCAACAACAACAGCAACAACAACATGAACAACACAGCAACATCCAAACAACAGAAAAGAAAACTAGTAGTGTTTGGTTCACAACTCAGAATCCAAGTACCTCCTTTACCACCTTCCTCTGTTTTCCCCTGTTTTTCCCCTGAATCACCAAGAGAGTTTGGGATTAAAACTCCAAGAAACAGTTTATGGCCGTTTGGAAACAAGGATTCCCAAGTTCACCCCCATGAATCCCCCGGAAACGGGAAAGGGAATGGGAATGGAAATGATAATAACCTTTCTTTGAGTGACATGGAGTTATCTGAGGATTACACCTGTGTAATCTCTCATGGTCCAAACCCTAAAACAACTCATATATTTGGGAATTGCATTGTTCAAAGCTGTTGTGGTGTTGTTGGGTCTTCTTCGTTTTCATCAAGGAGAAATGGGTATTTGTCCAAATTTGGAAACTCCATTTCTTCACCTGAGAATTTCCTTAGTTTTTGCCACCATTGCAAGAAGAAGCTTGGTGAAGGAAGTGACATTTACATGTACAGGTATACTCCCTTTTCTTCTTTCTTGTTCTTGAGCAAACAATAATGTTGTACTCTTTCTAGGTTAATTGATAGCGTAATTTGAACTAGTAATTATCCGTGTCCTAACCAAGATAATATCAATATCAATATCAATATCAATAGTACACTTGTATGTTCCCTAAAGATTAAAACCATTAATTAGTACTTGTAATAAGTGATCATGTTACTGATTGATAGCGTAATTTGAACTAGTAATTATCCGTGTCCTAACCAAGGTAATATCAATAGTACACTTGTATGTTCCCTTAAAGATTTAAACCATTAATTAGTACTTGTAATAAGTGATCATGTTACTGATTGATAGCGTAATTTGAACTAGTAATTATCCGTGCCCTAAGCCCCTAACCAAGGTAATATCAATAGTACACTTGTATGGTCCTATTGGATATCTAATGTGATCTTGAGCAAATAATGGTGTACTCTATTCGTCCTGAATTAGTTGTCATGTTACTAATTGATAGCGTAATTTAAACTAGTAATTAATCCTACCTCCTAATAGAGGTTATTTGTCCATTACATTAACTATTATCATGGTTAGTAGAAAACTAGAAATCCTATCTTGTAGTATCAAGTTTGCCATTTAAGTGAAATAGGTTGTGTTAATGTTATTATAGACTTGGTCCATTTAATTATTTGTATTTGATCCAATCAATCATTGTACCTTTAGGAATTTGGCCTATTGATATATAGGCAAGTAGGCTTAGCCCCATTTGTTTATGTAAGATACTTTATCAATGGATCACTACTTTGATTTTTTTTTTTGGCAATAATTAATACCCATTTCCATCAAAGTTTAAATAATTACTCCTTCCGTTTCTAGATAACAGGTCTCATTTAACTTTGTGATCCTTGAATTAAATCTAGCTCGTAGTGTTATTTTCTTTCAATATTATAGTACTTGGATCAGTTACACATTGTAACGACTAAAGTCAAATGTGATCTATTATTATTATTTCAATTTTCGAGACGTTAGAAAACGTACTAATGAGTACACAATTTTTTTTTATGAAAATGCAGAGGAGAAAAGGCCTTTTGCAGTCAAGAATGCCGCTGCCAAGAAATGCTTTTTGATGAAATGGAGAACTAGAAGAGTTTTGTTCTCAGAGAATTTCAAACCAGAATTAGCTACCTAAAAATCGAAAATCCCCCCAAATTTTTCCTACTATTTTGATTATAATAACCTAATTGGAACCCCCTTTTTTTTTAATTTTAATTTTATTATCAATTTCCCTTTCTTTACTCAATGTTGGTTTAGTCTCTAAGAAGTTTTGTCCAACAATGTATGTGAGGTAAATTAAAAATGTAGAGTTTATTTCTAATGAAAATGATGACCTAAGTTTTGATTCTCTCATTTATTTTAT TTTTATAAAGTCACTCCTCCAAACTGAAAAACTCCCCTCACTCTTTTCCCAACTCCTTTTCTTTCTCTCCCTCTCTCTTTCCTTTCCATTAAAACCACCTACTTTCTCTCTCCTCTTTCTCTCTCCCCCTCTACAAAAATTCAGCACATCCGTGGGCAGTTTCACAGAAACAAAAAAATAAAAATAAATTAAAAAAGCTTACCTCAACTGAAACTGGATAAAACTCCACACCTGCGCAATTTATGGGCTTTACTCATTAACCCACCAACCATTTTTTAATACTTCATCCAAAATTTATTTTATTTAATTTAAAAAAATATATGAAAATGAGTGTTTATTTCTTTATTGGGATCAGGAAAACTAAATTCTGCTGCAACTGATCAACAACAACAGCAGCAGCAGTTAACAGCAGCAGATTCACTATCAGTAGTGTGATTAGTAGCAGAATTAAGCTCTTAAAATCTGTAATCACATGGGTTTTGCATGTGGATTTTGGTGGTCCCTTTTTATTCTTTGATCTTCATTTCTTTTGATTATTAAAGTTTTCATCTTTTAAGCAAGTTACCCATTCATTTTTTTTTTCTGGGTTTGTTCTGCTGGGTTTTAGTCTTCCTACTTTGTCTGTTTCTTTGAGTTTGTTGCTCACAGATCCAAAGTTTTGATCTTTCAAGGAAAAAGTTTGGATCTTTATCAAAAAGATCATATTTTTTAGGGTGTTCAAAACTTCTCCAATTTCCCAATATTGAGGTAATGCTGAGGAAAAGAACAAGACAAGTGACAAGTACACAAGGGATAATTAGTGATCATAGCAATAGTTCATGGATTCCACCTGAGAAATCCACAAAACCCACTTCATTTTTCTTAAATTCTCCTAGATTTTTCAAGAGTTTGTTCTCTTCTTCTTCATCTTCTTCGAATTCACCTTCACCTTCACCTTCATCTAGCTTGAATGATCCAATAATGAGTCCAACTTCAATACTTGACAGTAAAGCATTCTCTGCTTTAGCCAACTCTTTCTGGGTTGTTGACAACAACACCAACAACAACAACAACAGCAACAAAAACTCAAAAACTTTCTCATGGGAACAACCCAACAACACAAAGGGGATTGGCCTTGCTTTAATTGATGAAAACAGTTCTGAATCCAACAACAACAACAACATCACCAACAACAACAGCAACAACAACATGAACAACACAGCAACATCCAAACAACAGAAAAGAAAACTAGTAGTGTTTGGTTCACAACTCAGAATCCAAGTACCTCCTTTACCACCTTCCTCTGTTTTCCCCTGTTTTTCCCCTGAATCACCAAGAGAGTTTGGGATTAAAACTCCAAGAAACAGTTTATGGCCGTTTGGAAACAAGGATTCCCAAGTTCACCCCCATGAATCCCCCGGAAACGGGAAAGGGAATGGGAATGGAAATGATAATAACCTTTCTTTGAGTGACATGGAGTTATCTGAGGATTACACCTGTGTAATCTCTCATGGTCCAAACCCTAAAACAACTCATATATTTGGGAATTGCATTGTTCAAAGCTGTTGTGGTGTTGTTGGGTCTTCTTCGTTTTCATCAAGGAGAAATGGGTATTTGTCCAAATTTGGAAACTCCATTTCTTCACCTGAGAATTTCCTTAGTTTTTGCCACCATTGCAAGAAGAAGCTTGGTGAAGGAAGTGACATTTACATGTACAGAGGAGAAAAGGCCTTTTGCAGTCAAGAATGCCGCTGCCAAGAAATGCTTTTTGATGAAATGGAGAACTAGAAGAGTTTTGTTCTCAGAGAATTTCAAACCAGAATTAGCTACCTAAAAATCGAAAATCCCCCCAAATTTTTCCTACTATTTTGATTATAATAACCTAATTGGAACCCCCTTTTTTTTTAATTTTAATTTTATTATCAATTTCCCTTTCTTTACTCAATGTTGGTTTAGTCTCTAAGAAGTTTTGTCCAACAATGTATGTGAGGTAAATTAAAAATGTAGAGTTTATTTCTAATGAAAATGATGACCTAAGTTTTGATTCTCTCATTTATTTTAT ATGCTGAGGAAAAGAACAAGACAAGTGACAAGTACACAAGGGATAATTAGTGATCATAGCAATAGTTCATGGATTCCACCTGAGAAATCCACAAAACCCACTTCATTTTTCTTAAATTCTCCTAGATTTTTCAAGAGTTTGTTCTCTTCTTCTTCATCTTCTTCGAATTCACCTTCACCTTCACCTTCATCTAGCTTGAATGATCCAATAATGAGTCCAACTTCAATACTTGACAGTAAAGCATTCTCTGCTTTAGCCAACTCTTTCTGGGTTGTTGACAACAACACCAACAACAACAACAACAGCAACAAAAACTCAAAAACTTTCTCATGGGAACAACCCAACAACACAAAGGGGATTGGCCTTGCTTTAATTGATGAAAACAGTTCTGAATCCAACAACAACAACAACATCACCAACAACAACAGCAACAACAACATGAACAACACAGCAACATCCAAACAACAGAAAAGAAAACTAGTAGTGTTTGGTTCACAACTCAGAATCCAAGTACCTCCTTTACCACCTTCCTCTGTTTTCCCCTGTTTTTCCCCTGAATCACCAAGAGAGTTTGGGATTAAAACTCCAAGAAACAGTTTATGGCCGTTTGGAAACAAGGATTCCCAAGTTCACCCCCATGAATCCCCCGGAAACGGGAAAGGGAATGGGAATGGAAATGATAATAACCTTTCTTTGAGTGACATGGAGTTATCTGAGGATTACACCTGTGTAATCTCTCATGGTCCAAACCCTAAAACAACTCATATATTTGGGAATTGCATTGTTCAAAGCTGTTGTGGTGTTGTTGGGTCTTCTTCGTTTTCATCAAGGAGAAATGGGTATTTGTCCAAATTTGGAAACTCCATTTCTTCACCTGAGAATTTCCTTAGTTTTTGCCACCATTGCAAGAAGAAGCTTGGTGAAGGAAGTGACATTTACATGTACAGAGGAGAAAAGGCCTTTTGCAGTCAAGAATGCCGCTGCCAAGAAATGCTTTTTGATGAAATGGAGAACTAG MLRKRTRQVTSTQGIISDHSNSSWIPPEKSTKPTSFFLNSPRFFKSLFSSSSSSSNSPSPSPSSSLNDPIMSPTSILDSKAFSALANSFWVVDNNTNNNNNSNKNSKTFSWEQPNNTKGIGLALIDENSSESNNNNNITNNNSNNNMNNTATSKQQKRKLVVFGSQLRIQVPPLPPSSVFPCFSPESPREFGIKTPRNSLWPFGNKDSQVHPHESPGNGKGNGNGNDNNLSLSDMELSEDYTCVISHGPNPKTTHIFGNCIVQSCCGVVGSSSFSSRRNGYLSKFGNSISSPENFLSFCHHCKKKLGEGSDIYMYRGEKAFCSQECRCQEMLFDEMEN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02241.1 vs. NCBI nr
Match: gi|902235092|gb|KNA23756.1| (hypothetical protein SOVF_022200 [Spinacia oleracea]) HSP 1 Score: 651.7 bits (1680), Expect = 6.800e-184 Identity = 335/338 (99.11%), Postives = 336/338 (99.41%), Query Frame = 1
BLAST of Spo02241.1 vs. NCBI nr
Match: gi|731336085|ref|XP_010679067.1| (PREDICTED: GATA zinc finger domain-containing protein 14 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 502.7 bits (1293), Expect = 5.100e-139 Identity = 266/347 (76.66%), Postives = 295/347 (85.01%), Query Frame = 1
BLAST of Spo02241.1 vs. NCBI nr
Match: gi|720009886|ref|XP_010259075.1| (PREDICTED: uncharacterized protein LOC104598615 [Nelumbo nucifera]) HSP 1 Score: 229.2 bits (583), Expect = 1.100e-56 Identity = 158/349 (45.27%), Postives = 205/349 (58.74%), Query Frame = 1
BLAST of Spo02241.1 vs. NCBI nr
Match: gi|720000650|ref|XP_010256094.1| (PREDICTED: uncharacterized protein LOC104596562 [Nelumbo nucifera]) HSP 1 Score: 227.3 bits (578), Expect = 4.100e-56 Identity = 159/341 (46.63%), Postives = 203/341 (59.53%), Query Frame = 1
BLAST of Spo02241.1 vs. NCBI nr
Match: gi|1009177521|ref|XP_015870018.1| (PREDICTED: uncharacterized protein LOC107407271 [Ziziphus jujuba]) HSP 1 Score: 225.7 bits (574), Expect = 1.200e-55 Identity = 157/349 (44.99%), Postives = 204/349 (58.45%), Query Frame = 1
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW36_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022200 PE=4 SV=1) HSP 1 Score: 651.7 bits (1680), Expect = 4.700e-184 Identity = 335/338 (99.11%), Postives = 336/338 (99.41%), Query Frame = 1
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CD81_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119450 PE=4 SV=1) HSP 1 Score: 502.7 bits (1293), Expect = 3.600e-139 Identity = 266/347 (76.66%), Postives = 295/347 (85.01%), Query Frame = 1
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Match: D7TDY7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00800 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 9.600e-52 Identity = 151/342 (44.15%), Postives = 189/342 (55.26%), Query Frame = 1
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Match: A0A067L7Z5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02192 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.400e-50 Identity = 149/344 (43.31%), Postives = 198/344 (57.56%), Query Frame = 1
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Match: A0A162AIW6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002382 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 2.600e-49 Identity = 137/316 (43.35%), Postives = 182/316 (57.59%), Query Frame = 1
BLAST of Spo02241.1 vs. ExPASy Swiss-Prot
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2) HSP 1 Score: 86.3 bits (212), Expect = 7.100e-16 Identity = 103/350 (29.43%), Postives = 149/350 (42.57%), Query Frame = 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Match: AT3G22550.1 (Protein of unknown function (DUF581)) HSP 1 Score: 138.7 bits (348), Expect = 6.800e-33 Identity = 125/338 (36.98%), Postives = 170/338 (50.30%), Query Frame = 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Match: AT2G25690.1 (Protein of unknown function (DUF581)) HSP 1 Score: 103.2 bits (256), Expect = 3.200e-22 Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Match: AT5G11460.1 (Protein of unknown function (DUF581)) HSP 1 Score: 92.0 bits (227), Expect = 7.300e-19 Identity = 101/332 (30.42%), Postives = 152/332 (45.78%), Query Frame = 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Match: AT3G63210.1 (Protein of unknown function (DUF581)) HSP 1 Score: 86.3 bits (212), Expect = 4.000e-17 Identity = 103/350 (29.43%), Postives = 149/350 (42.57%), Query Frame = 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Match: AT1G79970.1 (unknown protein) HSP 1 Score: 60.8 bits (146), Expect = 1.800e-9 Identity = 36/108 (33.33%), Postives = 51/108 (47.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02241.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02241.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02241.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo02241.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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