Spo02340 (gene)

Overview
NameSpo02340
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr5 : 3592865 .. 3597566 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCGATCATCTCCAACAGACAACAGAGCCACCTCTACCCGTCTTTGTCTCGTTTATTTTGACCGGAATCCCTTTTTCCCACTCTCTCCACCGTCAACAACACCAGTCAACAACAGTCGGCGAACAACGCGACAAGTACAAAATTCTATCGATCACCGTCTTCTCTCTTTCAAGGTATACCATTTCTCCCTTCTAATACTCTCTTTCTCTCTCTCTTTGAATTTACTGTCTAAGTTTGACATTGAATTTCATAATTATCCTATGTTTCGCCCTAATTTAAGGAGAATATGAATTGATTGTCTAATTGTTGGTATGGTGATGACATTTGATTGTTTTCAATTGGTATTTACACAAACTAAGGAGTTGTTAGTCCGATATTTGAAATTGAAATTGAAAAAGTATTTTTGGATGACAAATGAAATATACTCAAATGCAGGGATTATTGATTGTTTCAGTTGGCATAAATTCACTTTGGTGTTTTGTTACGTGTACTTGATTTCATGGTTGTGTATAATTTGTGTAGCGAGTCTAGTGATTAGTGATGCGTCAAATTCGATATTTGAAATTGAAAAAAGTGTTTTTGAATGACAAATGAAATACTCAAATGCAGGGATTAATGTTTTATCGATTGTTTCAGCTGGCATAAAATCACTTTGGTGTTTTTTTTAATGTGTACTTGATTTCATGGCTGTGTATAATTTCTGTAGCGAGTCTAGTGATTAGTGATGCGTATATTTGACACAAGGGGAAGTTTAGCTTGTCTATTGGATTAACAACAAAGGCAAAACAACTACGGAGTACGAAATAGACTAATTTCAGCTCTTATGGGTTATCGAAAATTGCTCGACCACTCGAGCCTCGTGGAGGAGGTAAGTCGCTGTATGTGCCTCAATTGGTCGGTTTACAAGGGGTTGTGTTTTTCACAGGATTCGGACTGCATTGAACCTGTACGGCTATACACGTCATACATTTCCAAACTTACCCCCTTTGTCTTTTTGGAAGGTTGTTAAGTTGACAGAAATATCAAATGCAAGGATTATAGATTGTTTGAGTTGCCACCTGGTGTTGTTTAGGTGTATTTGATTTCATGGTTGTGTATAATTTGTGTAGCAAGTCTAGTGACCAATGTATAAAAAGGCTCAAGACGCAACAAGGCGATTTAGAGTTCCTAGCGCCTCGAGGCGCGCCTCATTGAAGTGAGGCGCCCTAATAAAAAGTGAAAAAAAAGTGAAAATTGGTGTGTGCCTTAGTAGGTGCGCCTTTTTTGCGCCTTTTTGCGCCTCAAAGTGCGCCTTTTTGCGCCTTGGTTTGCCTTAGGTGCGCCTCATCGAAATCTCCTCGTCCAGACAATAAAAGACAATAAAAGGCGCTGGCTCCAATCGCCTTGCGCCTGGCACGCCTTTTTATACACTGCTAGTGACTAATGACTAGTGACTTAGTGAGTGGTATATTTGACACAAGGGGAACTTGGGTTTAAATTGTTTATTGGTTTAACAACAAATGCTAAATAGCTACTAAACAGATTAATTTCAGCTTTATATGGCCGGGTTATCGAAAATTGCCGAATCTATTTTTTTGGTGTAGAGAGAGCCACGAAGGGGAAGTCGACAATTGATGTAGACGGGATTCGATCCAGGTCTTGGGTACCACCCCTCGAGACTTTACCAACTAAGCTAGTTGGTATCCACAAAATTGCTGAATCTAATAAGTGTCTAATGTAGTTCAATGAGTGGTAGCCAACTAGCTGTGTAGGTTGGTTTGAATTGATCGGCTCAGGGGTTCCATTTTAACATTCTATGTTGATGTGATGGATTTTTGCATTATTGATGAGGTAATGGATGATGTAGGCTATACGCTGAACTAATTGGTGTCCAAACCTAATGACTCTGTATGCATTATGACTTGAATGGATGATTAATGTTATTGTAATTGTACATGTCACCTGTGAATTATTAGTTATAATTTGAATTTTGTATTATCTGAAAATTTCAAAGCCATGAGCAAAGCATCCTAGAATCAGGAAAAGAATCTTGGAACGCCCACTGCATATAAATGGTTGTAATTTTGTTACTATCTTAAGCTGTTGGTCCTGGTCTCTGTTGGTAGAGCCATAATTCCTGAAGGGAATGCATGACATACATGTTGAGTTAAGTTAACTTTAGCAAGTCACTTTCTGATTAGGTATTGTTGCCATCCTTGTTAAGATTCAAGTGTAATAGCCTGTTGATTACATTGACAGTTGGTATAATGATGCAGGAGTAGTATAAAATATAGTATGAAATGTTCATAGCTGTTTATCATGATACTCGTGCTCCTCTTTTATTGATAGAATCTCTGATAAATATATATTCCTCTGTTTTCTGTCTCAAATTCTTTGAATTTTTTGGTTATTCCCTGTTACAAGTATCACTTATCACAAGCTATAGAGTATAGATGATTTCAGAAATAAACCACATTTAGACATTCTAGTTTCATGATGAAAGCTGGATAAACCATTTTACTGAGTAGGAGGGAGTATTTTGAAAACATTTATGATTGAAGCAGCTGATGTTGCAATATTTTGGAACTCTTGATTTTTGAATTATTTTTTTCCACAACAAAGATAAGCCAGATATTTCATATGACTAATTGAGCATAAACACTTCTAGAAGCTTGAAAGCCTAAATTCTGCACATATTCAATGATAGAGGAAAGATCTCATTCCAAGCTCCAAAACACATACAATATCACCCAGTAGGCCAGTAATAACTCAAAATTACAGATCACACAATTCATCTTCAATCTTTGTTCTTCTACACGAATCGGGAACTTTTATCGTGACTATTAAATGATTTAGATCCCAGGTAATCACTCAGCAATATTGTATACTAGAGAGGAACCACCTCTTTATTGCATAAGATCTATTTTTCCAGTAAATAGTAGAAGCTTCTTGCTGATGACATCCAACACCTTGACAATTTAAGACAAAGTACATACTTGGTTTATAACTATATGTTTCTACTTGAATTTGATTTTCCCTTTCCTTTCCCCACCAAAAATAAGAGATAAATACATGTCTAGAAATCTAGAATTGAATTTATTTTTAGTGTTTGGGTTATGGACTTATGGGTATTTGCGTGGTTGAATTTAATTTGTAATTTGTATACTTGATTTGGGGAAGAAGTACTTCTCTTTCGTTGAGCTTAGGAGTGTTAGGACTTTAATTTGTGATTTGAGTGGTCTGATTCAAGTTGCTTATACTCTCGTGCCATGTAAGTGTGTTATTGTTTATTTGTTTTTTCATTTTGTTTCTTGTTGGATTTGAATTATGTCGTGCCATGGAAAGTGTAATTTTTTAAAAATATGTTTTCATTAGTTTTATTCTATCTTATATACAAATTTATTATTTTGTTTTTTGAAATGTGTAGGTGACTTTCAATTTTTTTGTGCAATGGAGTTGTATTAAATTTTAGACCTGGATCCGCCCCCGCTTAAAACTCTGCCTTTCATATATTCATGGGTAAATTATATGAAGCTCTGAGACCCATCTTTAGGAACCCAGTTCCTTTAGACCCTTTATTTTTCATGAATTTGCTTCAGACGTGCATTGATGCAAAAGCAGGAAAATAAGGTCGTCTGATTCATAAATATTTGGTCTATAATGGGTTAGACTCAAATGTGAATTTAAATACCAAACTAATCATACTTTATGGAAAAATTGGTGACATGAGACATGCACGTAAGGTGTTCGATAGAATGCCTGAAAGAAATGTTGTATCTTGGACTGCTTTGTTATCTGGGTACTCTCAAAATGGGTTCTTTAAGGATGCCCTGATGGTTTTTGAGGATATGCATCATTCAGGTGTGAAGGGTAATCAGTTTACTTATGGTAGTGCATTGAGGGGGTGCACCAAGTTGATGTGTTTAAGGAGTGGGAAGCAAATTCAAGGGTGTTTGCAGAAGGGTAGATTTTCTAGTAATTTGTTTGTGCAAAGTGCATTGGTTGACCTGCATTCGAAGTGTGGGAGTATCAACGATGCGAGTATCATCTTCCAGACAATGCCTGTGAGGGATTTGGTGTGCTGGAACACAATGATCGATGGTTATGCAGTCCAAGGCTTTGTAAATGATGCATTTCAATTGTTCCCATTGATGATGAAAGAAGGTGAGATTTACCTATTTAATATCCATTTTAATTGGGGTTTGTGTTGTCATTGAGTTTTTAGACAATTGTTTTGGGAGGAAGTCTATGTCAAAAGTGACTTGTATCCAAAATGGATGCAAATGACTCTGATTGGTACTCATTAACTTGGTATTGGTGTGGTATTGGTCACCCGATACACTACTAAGTAGTACCAATACGAGCCATTTACGTTATTGGTAATCGCGTACCCTTTGTTTGTACTAAAATAGGTTGTATTGGGTTACTTGTGTCCTATTTGGTTATAAGCCCCTTGATATTTAGAAAACCTCATTGTTTGGGTACTACGAAGTTAAATTCTTGTCAAGATTGCTTTATTAGGGTTAGTTTTTTATTTACAACTGTTGATTTGTTATGTTTGTCTTCCTTAATAATATAAGGTACAATACCCGATTGCTTTACTTTTGGAAGTTTATTGAGAGCCTGTACTCAAGGTAATAATCTTTCCAGAGTCTTCCAAATCCATGGACTTATGATACAACATGGTTACGGATTACATGATCTGTTGAACAGACTATTAA

mRNA sequence

TTCTCGATCATCTCCAACAGACAACAGAGCCACCTCTACCCGTCTTTGTCTCGTTTATTTTGACCGGAATCCCTTTTTCCCACTCTCTCCACCGTCAACAACACCAGTCAACAACAGTCGGCGAACAACGCGACAAGTACAAAATTCTATCGATCACCGTCTTCTCTCTTTCAAGGTGACTTTCAATTTTTTTGTGCAATGGAGTTGTATTAAATTTTAGACCTGGATCCGCCCCCGCTTAAAACTCTGCCTTTCATATATTCATGGGTAAATTATATGAAGCTCTGAGACCCATCTTTAGGAACCCAGTTCCTTTAGACCCTTTATTTTTCATGAATTTGCTTCAGACGTGCATTGATGCAAAAGCAGGAAAATAAGGTCGTCTGATTCATAAATATTTGGTCTATAATGGGTTAGACTCAAATGTGAATTTAAATACCAAACTAATCATACTTTATGGAAAAATTGGTGACATGAGACATGCACGTAAGGTGTTCGATAGAATGCCTGAAAGAAATGTTGTATCTTGGACTGCTTTGTTATCTGGGTACTCTCAAAATGGGTTCTTTAAGGATGCCCTGATGGTTTTTGAGGATATGCATCATTCAGGTGTGAAGGGTAATCAGTTTACTTATGGTAGTGCATTGAGGGGGTGCACCAAGTTGATGTGTTTAAGGAGTGGGAAGCAAATTCAAGGGTGTTTGCAGAAGGGTAGATTTTCTAGTAATTTGTTTGTGCAAAGTGCATTGGTTGACCTGCATTCGAAGTGTGGGAGTATCAACGATGCGAGTATCATCTTCCAGACAATGCCTGTGAGGGATTTGGTGTGCTGGAACACAATGATCGATGGTTATGCAGTCCAAGGCTTTGTAAATGATGCATTTCAATTGTTCCCATTGATGATGAAAGAAGGTACAATACCCGATTGCTTTACTTTTGGAAGTTTATTGAGAGCCTGTACTCAAGACTATTAA

Coding sequence (CDS)

ATGAGACATGCACGTAAGGTGTTCGATAGAATGCCTGAAAGAAATGTTGTATCTTGGACTGCTTTGTTATCTGGGTACTCTCAAAATGGGTTCTTTAAGGATGCCCTGATGGTTTTTGAGGATATGCATCATTCAGGTGTGAAGGGTAATCAGTTTACTTATGGTAGTGCATTGAGGGGGTGCACCAAGTTGATGTGTTTAAGGAGTGGGAAGCAAATTCAAGGGTGTTTGCAGAAGGGTAGATTTTCTAGTAATTTGTTTGTGCAAAGTGCATTGGTTGACCTGCATTCGAAGTGTGGGAGTATCAACGATGCGAGTATCATCTTCCAGACAATGCCTGTGAGGGATTTGGTGTGCTGGAACACAATGATCGATGGTTATGCAGTCCAAGGCTTTGTAAATGATGCATTTCAATTGTTCCCATTGATGATGAAAGAAGGTACAATACCCGATTGCTTTACTTTTGGAAGTTTATTGAGAGCCTGTACTCAAGACTATTAA

Protein sequence

MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQDY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02340.1Spo02340.1mRNA


Homology
[Close]
BLAST of Spo02340.1 vs. NCBI nr
Match: gi|902235100|gb|KNA23764.1| (hypothetical protein SOVF_022280 [Spinacia oleracea])

HSP 1 Score: 326.2 bits (835), Expect = 3.200e-86
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

		  

Query: 11  MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG 70
           MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG
Sbjct: 1   MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG 60

Query: 71  KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ 130
           KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ
Sbjct: 61  KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ 120

Query: 131 GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ
Sbjct: 121 GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 154
[Close]
BLAST of Spo02340.1 vs. NCBI nr
Match: gi|902168539|gb|KNA07514.1| (hypothetical protein SOVF_170900 [Spinacia oleracea])

HSP 1 Score: 323.2 bits (827), Expect = 2.700e-85
Identity = 151/164 (92.07%), Postives = 156/164 (95.12%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           MRHARKVFDRMPERN+VSWTALLSGYSQNGFFKD+LMVFEDMHHSGVKGNQFTYGSALRG
Sbjct: 71  MRHARKVFDRMPERNIVSWTALLSGYSQNGFFKDSLMVFEDMHHSGVKGNQFTYGSALRG 130

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           CTKLMCLRSGKQIQGCLQK RF  NLFVQSALVDL+SKCGSINDASIIFQTMP RDLVCW
Sbjct: 131 CTKLMCLRSGKQIQGCLQKSRFFRNLFVQSALVDLYSKCGSINDASIIFQTMPERDLVCW 190

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           N MI GYAVQGF+NDAF LFPLMMKEGTIPDCFTFGSLLRAC +
Sbjct: 191 NAMIGGYAVQGFLNDAFHLFPLMMKEGTIPDCFTFGSLLRACAE 234
[Close]
BLAST of Spo02340.1 vs. NCBI nr
Match: gi|870870007|gb|KMT20752.1| (hypothetical protein BVRB_1g007230 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 274.6 bits (701), Expect = 1.100e-70
Identity = 130/164 (79.27%), Postives = 139/164 (84.76%), Query Frame = 1 

		  

Query: 3   HARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCT 62
           HARKVFD MPERN+VSWTALLSGYSQNG FKDA+MVF DM  SGVKGNQFTYGS LR CT
Sbjct: 74  HARKVFDGMPERNIVSWTALLSGYSQNGLFKDAVMVFWDMRRSGVKGNQFTYGSVLRSCT 133

Query: 63  KLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNT 122
           KLMCL SG+QIQGCLQK RF  +LFVQSALVDL+SKCG+I DAS +FQ M  RDLVCWN 
Sbjct: 134 KLMCLSSGQQIQGCLQKSRFVRDLFVQSALVDLYSKCGNIKDASNVFQMMSERDLVCWNA 193

Query: 123 MIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQDY 167
           MI GYAVQGFVN AFQ+F  MMKEGT PDCFTFGSLL AC Q +
Sbjct: 194 MIGGYAVQGFVNAAFQMFLSMMKEGTTPDCFTFGSLLSACAQGF 237
[Close]
BLAST of Spo02340.1 vs. NCBI nr
Match: gi|731312271|ref|XP_010673353.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 273.9 bits (699), Expect = 1.900e-70
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 1 

		  

Query: 3   HARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCT 62
           HARKVFD MPERN+VSWTALLSGYSQNG FKDA+MVF DM  SGVKGNQFTYGS LR CT
Sbjct: 74  HARKVFDGMPERNIVSWTALLSGYSQNGLFKDAVMVFWDMRRSGVKGNQFTYGSVLRSCT 133

Query: 63  KLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNT 122
           KLMCL SG+QIQGCLQK RF  +LFVQSALVDL+SKCG+I DAS +FQ M  RDLVCWN 
Sbjct: 134 KLMCLSSGQQIQGCLQKSRFVRDLFVQSALVDLYSKCGNIKDASNVFQMMSERDLVCWNA 193

Query: 123 MIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           MI GYAVQGFVN AFQ+F  MMKEGT PDCFTFGSLL AC Q
Sbjct: 194 MIGGYAVQGFVNAAFQMFLSMMKEGTTPDCFTFGSLLSACAQ 235
[Close]
BLAST of Spo02340.1 vs. NCBI nr
Match: gi|870870008|gb|KMT20753.1| (hypothetical protein BVRB_1g007230 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 273.9 bits (699), Expect = 1.900e-70
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 1 

		  

Query: 3   HARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCT 62
           HARKVFD MPERN+VSWTALLSGYSQNG FKDA+MVF DM  SGVKGNQFTYGS LR CT
Sbjct: 74  HARKVFDGMPERNIVSWTALLSGYSQNGLFKDAVMVFWDMRRSGVKGNQFTYGSVLRSCT 133

Query: 63  KLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNT 122
           KLMCL SG+QIQGCLQK RF  +LFVQSALVDL+SKCG+I DAS +FQ M  RDLVCWN 
Sbjct: 134 KLMCLSSGQQIQGCLQKSRFVRDLFVQSALVDLYSKCGNIKDASNVFQMMSERDLVCWNA 193

Query: 123 MIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           MI GYAVQGFVN AFQ+F  MMKEGT PDCFTFGSLL AC Q
Sbjct: 194 MIGGYAVQGFVNAAFQMFLSMMKEGTTPDCFTFGSLLSACAQ 235
[Close]
BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXX6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022280 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.200e-86
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

		  

Query: 11  MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG 70
           MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG
Sbjct: 1   MPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTKLMCLRSG 60

Query: 71  KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ 130
           KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ
Sbjct: 61  KQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTMIDGYAVQ 120

Query: 131 GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ
Sbjct: 121 GFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 154
[Close]
BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJT3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_170900 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.900e-85
Identity = 151/164 (92.07%), Postives = 156/164 (95.12%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           MRHARKVFDRMPERN+VSWTALLSGYSQNGFFKD+LMVFEDMHHSGVKGNQFTYGSALRG
Sbjct: 71  MRHARKVFDRMPERNIVSWTALLSGYSQNGFFKDSLMVFEDMHHSGVKGNQFTYGSALRG 130

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           CTKLMCLRSGKQIQGCLQK RF  NLFVQSALVDL+SKCGSINDASIIFQTMP RDLVCW
Sbjct: 131 CTKLMCLRSGKQIQGCLQKSRFFRNLFVQSALVDLYSKCGSINDASIIFQTMPERDLVCW 190

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           N MI GYAVQGF+NDAF LFPLMMKEGTIPDCFTFGSLLRAC +
Sbjct: 191 NAMIGGYAVQGFLNDAFHLFPLMMKEGTIPDCFTFGSLLRACAE 234
[Close]
BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4K3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g007230 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.700e-71
Identity = 130/164 (79.27%), Postives = 139/164 (84.76%), Query Frame = 1 

		  

Query: 3   HARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCT 62
           HARKVFD MPERN+VSWTALLSGYSQNG FKDA+MVF DM  SGVKGNQFTYGS LR CT
Sbjct: 74  HARKVFDGMPERNIVSWTALLSGYSQNGLFKDAVMVFWDMRRSGVKGNQFTYGSVLRSCT 133

Query: 63  KLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNT 122
           KLMCL SG+QIQGCLQK RF  +LFVQSALVDL+SKCG+I DAS +FQ M  RDLVCWN 
Sbjct: 134 KLMCLSSGQQIQGCLQKSRFVRDLFVQSALVDLYSKCGNIKDASNVFQMMSERDLVCWNA 193

Query: 123 MIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQDY 167
           MI GYAVQGFVN AFQ+F  MMKEGT PDCFTFGSLL AC Q +
Sbjct: 194 MIGGYAVQGFVNAAFQMFLSMMKEGTTPDCFTFGSLLSACAQGF 237
[Close]
BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D903_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g007230 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.300e-70
Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 1 

		  

Query: 3   HARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCT 62
           HARKVFD MPERN+VSWTALLSGYSQNG FKDA+MVF DM  SGVKGNQFTYGS LR CT
Sbjct: 74  HARKVFDGMPERNIVSWTALLSGYSQNGLFKDAVMVFWDMRRSGVKGNQFTYGSVLRSCT 133

Query: 63  KLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNT 122
           KLMCL SG+QIQGCLQK RF  +LFVQSALVDL+SKCG+I DAS +FQ M  RDLVCWN 
Sbjct: 134 KLMCLSSGQQIQGCLQKSRFVRDLFVQSALVDLYSKCGNIKDASNVFQMMSERDLVCWNA 193

Query: 123 MIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACTQ 165
           MI GYAVQGFVN AFQ+F  MMKEGT PDCFTFGSLL AC Q
Sbjct: 194 MIGGYAVQGFVNAAFQMFLSMMKEGTTPDCFTFGSLLSACAQ 235
[Close]
BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Match: A0A061GGX7_THECC (Tetratricopeptide repeat-like superfamily protein, putative OS=Theobroma cacao GN=TCM_027780 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.500e-58
Identity = 105/157 (66.88%), Postives = 129/157 (82.17%), Query Frame = 1 

		  

Query: 4   ARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTK 63
           A+KVFD+M ER +VSWTA++SGYSQNGFF++AL+VF +M  +G KGNQF+YGSAL+ CT 
Sbjct: 97  AKKVFDKMSERTIVSWTAVISGYSQNGFFENALLVFSEMRKAGFKGNQFSYGSALKACTG 156

Query: 64  LMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTM 123
           L CL  G QIQGC++KGRF  NLFVQS L+DLH+KCG++ DAS +F  M  RDLV WN M
Sbjct: 157 LRCLERGLQIQGCVEKGRFVMNLFVQSGLLDLHAKCGNMEDASRLFYRMGERDLVSWNVM 216

Query: 124 IDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLR 161
           I G+A+QGF +DAFQLF  MM+EG IPDCFTFGS+LR
Sbjct: 217 IGGFALQGFPDDAFQLFREMMREGKIPDCFTFGSVLR 253
[Close]
BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.900e-48
Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           ++HARK+FDR+ +R+VVSWTA++S +S+ G+  DAL++F++MH   VK NQFTYGS L+ 
Sbjct: 64  VKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKS 123

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           C  L CL+ G QI G ++KG  + NL V+SAL+ L+++CG + +A + F +M  RDLV W
Sbjct: 124 CKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSW 183

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRA 162
           N MIDGY      + +F LF LM+ EG  PDCFTFGSLLRA
Sbjct: 184 NAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRA 224
[Close]
BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.200e-33
Identity = 70/161 (43.48%), Postives = 100/161 (62.11%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           +  ARKV D MPE+NVVSWTA++S YSQ G   +AL VF +M  S  K N+FT+ + L  
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           C +   L  GKQI G + K  + S++FV S+L+D+++K G I +A  IF+ +P RD+V  
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRA 162
             +I GYA  G   +A ++F  +  EG  P+  T+ SLL A
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTA 263
[Close]
BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.200e-32
Identity = 67/160 (41.88%), Postives = 103/160 (64.38%), Query Frame = 1 

		  

Query: 4   ARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTK 63
           A+ +FD+MP+R+ VSW A+++GYSQ+G   +AL +F  M   G + N+ ++ SAL  C  
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421

Query: 64  LMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTM 123
           ++ L  GKQ+ G L KG + +  FV +AL+ ++ KCGSI +A+ +F+ M  +D+V WNTM
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 481

Query: 124 IDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACT 164
           I GY+  GF   A + F  M +EG  PD  T  ++L AC+
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
[Close]
BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.800e-32
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 

		  

Query: 4   ARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTK 63
           A KVFD MPERNVVSW+AL+SG+  NG  K +L +F +M   G+  N+FT+ + L+ C  
Sbjct: 60  AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 64  LMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTM 123
           L  L  G QI G   K  F   + V ++LVD++SKCG IN+A  +F+ +  R L+ WN M
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179

Query: 124 IDGYAVQGFVNDAFQLFPLMMKEGTI---PDCFTFGSLLRACT 164
           I G+   G+ + A   F  MM+E  I   PD FT  SLL+AC+
Sbjct: 180 IAGFVHAGYGSKALDTFG-MMQEANIKERPDEFTLTSLLKACS 221
[Close]
BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 8.600e-31
Identity = 57/163 (34.97%), Postives = 99/163 (60.74%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           +  A  +F++MP ++++SWT ++ GYSQN  +++A+ VF  M   G+  ++ T  + +  
Sbjct: 237 LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISA 296

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           C  L  L  GK++     +  F  ++++ SALVD++SKCGS+  A ++F  +P ++L CW
Sbjct: 297 CAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCW 356

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACT 164
           N++I+G A  GF  +A ++F  M  E   P+  TF S+  ACT
Sbjct: 357 NSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACT 399
[Close]
BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Match: AT3G20730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 191.8 bits (486), Expect = 3.300e-49
Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           ++HARK+FDR+ +R+VVSWTA++S +S+ G+  DAL++F++MH   VK NQFTYGS L+ 
Sbjct: 63  VKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKS 122

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           C  L CL+ G QI G ++KG  + NL V+SAL+ L+++CG + +A + F +M  RDLV W
Sbjct: 123 CKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSW 182

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRA 162
           N MIDGY      + +F LF LM+ EG  PDCFTFGSLLRA
Sbjct: 183 NAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRA 223
[Close]
BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.800e-34
Identity = 70/161 (43.48%), Postives = 100/161 (62.11%), Query Frame = 1 

		  

Query: 1   MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
           +  ARKV D MPE+NVVSWTA++S YSQ G   +AL VF +M  S  K N+FT+ + L  
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 61  CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
           C +   L  GKQI G + K  + S++FV S+L+D+++K G I +A  IF+ +P RD+V  
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 121 NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRA 162
             +I GYA  G   +A ++F  +  EG  P+  T+ SLL A
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTA 263
[Close]
BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 141.0 bits (354), Expect = 6.800e-34
Identity = 67/160 (41.88%), Postives = 103/160 (64.38%), Query Frame = 1 

		  

Query: 4   ARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTK 63
           A+ +FD+MP+R+ VSW A+++GYSQ+G   +AL +F  M   G + N+ ++ SAL  C  
Sbjct: 362 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCAD 421

Query: 64  LMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTM 123
           ++ L  GKQ+ G L KG + +  FV +AL+ ++ KCGSI +A+ +F+ M  +D+V WNTM
Sbjct: 422 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 481

Query: 124 IDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACT 164
           I GY+  GF   A + F  M +EG  PD  T  ++L AC+
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
[Close]
BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Match: AT3G15130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 4.400e-33
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1 

		  

Query: 4   ARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRGCTK 63
           A KVFD MPERNVVSW+AL+SG+  NG  K +L +F +M   G+  N+FT+ + L+ C  
Sbjct: 60  AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 64  LMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCWNTM 123
           L  L  G QI G   K  F   + V ++LVD++SKCG IN+A  +F+ +  R L+ WN M
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179

Query: 124 IDGYAVQGFVNDAFQLFPLMMKEGTI---PDCFTFGSLLRACT 164
           I G+   G+ + A   F  MM+E  I   PD FT  SLL+AC+
Sbjct: 180 IAGFVHAGYGSKALDTFG-MMQEANIKERPDEFTLTSLLKACS 221
[Close]
BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 134.8 bits (338), Expect = 4.800e-32
Identity = 57/163 (34.97%), Postives = 99/163 (60.74%), Query Frame = 1 

		  

Query: 1    MRHARKVFDRMPERNVVSWTALLSGYSQNGFFKDALMVFEDMHHSGVKGNQFTYGSALRG 60
            +  A  +F++MP ++++SWT ++ GYSQN  +++A+ VF  M   G+  ++ T  + +  
Sbjct: 982  LEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISA 1041

Query: 61   CTKLMCLRSGKQIQGCLQKGRFSSNLFVQSALVDLHSKCGSINDASIIFQTMPVRDLVCW 120
            C  L  L  GK++     +  F  ++++ SALVD++SKCGS+  A ++F  +P ++L CW
Sbjct: 1042 CAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCW 1101

Query: 121  NTMIDGYAVQGFVNDAFQLFPLMMKEGTIPDCFTFGSLLRACT 164
            N++I+G A  GF  +A ++F  M  E   P+  TF S+  ACT
Sbjct: 1102 NSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACT 1144
The following BLAST results are available for this feature:
BLAST of Spo02340.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902235100|gb|KNA23764.1|3.2e-86100.hypothetical protein SOVF_0222... [more]
gi|902168539|gb|KNA07514.1|2.7e-8592.0hypothetical protein SOVF_1709... [more]
gi|870870007|gb|KMT20752.1|1.1e-7079.2hypothetical protein BVRB_1g00... [more]
gi|731312271|ref|XP_010673353.1|1.9e-7080.2PREDICTED: pentatricopeptide r... [more]
gi|870870008|gb|KMT20753.1|1.9e-7080.2hypothetical protein BVRB_1g00... [more]
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BLAST of Spo02340.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RXX6_SPIOL2.2e-86100.Uncharacterized protein OS=Spi... [more]
A0A0K9QJT3_SPIOL1.9e-8592.0Uncharacterized protein OS=Spi... [more]
A0A0J8D4K3_BETVU7.7e-7179.2Uncharacterized protein OS=Bet... [more]
A0A0J8D903_BETVU1.3e-7080.2Uncharacterized protein OS=Bet... [more]
A0A061GGX7_THECC7.5e-5866.8Tetratricopeptide repeat-like ... [more]
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BLAST of Spo02340.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PP244_ARATH5.9e-4852.8Pentatricopeptide repeat-conta... [more]
PP227_ARATH3.2e-3343.4Putative pentatricopeptide rep... [more]
PP301_ARATH1.2e-3241.8Pentatricopeptide repeat-conta... [more]
PP232_ARATH7.8e-3244.7Putative pentatricopeptide rep... [more]
PPR15_ARATH8.6e-3134.9Pentatricopeptide repeat-conta... [more]
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BLAST of Spo02340.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G20730.13.3e-4952.8Tetratricopeptide repeat (TPR)... [more]
AT3G13770.11.8e-3443.4Pentatricopeptide repeat (PPR)... [more]
AT4G02750.16.8e-3441.8Tetratricopeptide repeat (TPR)... [more]
AT3G15130.14.4e-3344.7Tetratricopeptide repeat (TPR)... [more]
AT1G06150.14.8e-3234.9basic helix-loop-helix (bHLH) ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 116..162
score: 6.5E-12coord: 15..62
score: 1.0
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 118..152
score: 4.7E-8coord: 17..50
score: 1.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 85..115
score: 5.963coord: 50..84
score: 5.218coord: 15..49
score: 11.498coord: 116..150
score: 11
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..164
score: 3.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0008152 metabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0008568 microtubule-severing ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo142400.76Barchart | Table
Spo172200.73Barchart | Table
Spo092140.73Barchart | Table
Spo162180.72Barchart | Table
Spo031630.72Barchart | Table
Spo125430.71Barchart | Table
Spo196090.71Barchart | Table
Spo254540.71Barchart | Table
Spo036650.70Barchart | Table
Spo057650.70Barchart | Table
Spo218230.70Barchart | Table
Spo177260.70Barchart | Table
Spo186370.70Barchart | Table
Spo144520.69Barchart | Table
Spo172250.69Barchart | Table
Spo013440.69Barchart | Table
Spo100210.69Barchart | Table
Spo213880.69Barchart | Table
Spo230420.69Barchart | Table
Spo185420.68Barchart | Table
Spo150890.68Barchart | Table
Spo264810.68Barchart | Table
Spo018410.68Barchart | Table
Spo073200.68Barchart | Table
Spo216000.68Barchart | Table
Spo269900.68Barchart | Table
Spo024780.68Barchart | Table
Spo205030.68Barchart | Table
Spo109650.68Barchart | Table
Spo144240.67Barchart | Table
Spo001730.67Barchart | Table
Spo013850.67Barchart | Table
Spo027490.67Barchart | Table
Spo070790.67Barchart | Table
Spo081500.67Barchart | Table
Spo084030.67Barchart | Table
Spo103290.67Barchart | Table
Spo172850.67Barchart | Table
Spo190130.67Barchart | Table
Spo237450.67Barchart | Table
Spo077410.66Barchart | Table
Spo076850.66Barchart | Table
Spo130870.66Barchart | Table
Spo187810.66Barchart | Table
Spo041790.66Barchart | Table
Spo237710.66Barchart | Table
Spo049850.66Barchart | Table
Spo106710.66Barchart | Table
Spo166800.66Barchart | Table
Spo200450.66Barchart | Table
Spo090080.66Barchart | Table
Spo205550.66Barchart | Table
Spo178520.66Barchart | Table
Spo117440.66Barchart | Table
Spo214220.66Barchart | Table
Spo149530.65Barchart | Table
Spo261910.65Barchart | Table
Spo116730.65Barchart | Table
Spo206390.65Barchart | Table
Spo079590.65Barchart | Table
Spo225500.65Barchart | Table
Spo054500.65Barchart | Table
Spo022300.65Barchart | Table
Spo150670.65Barchart | Table
Spo001460.65Barchart | Table