Spo02366 (gene)

Overview
NameSpo02366
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone H2A
Locationchr5 : 2944928 .. 2949094 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGAAAAACCAGAAATTTCATGAAAATTTCATGAAATTGGCGCCTCTTTTAACTCCTCGTTAAAATCAAAACGTAAATTCACCGCCATTAATTTCAAAACCCACTTTCTCTCTCCTCTATTTAATTCATCCCTTTCTTTCTGTCACTCGATTTCCAAAGCTTCTTCCTTTCTCAATTCCCTCACTCCCAGCCAAAGGTATGCTTTACTGCTTTCTTGCATTTTCTTTTCTCCAATTTCTGTGTATTATTGGCTTGGAAATTTAAATTTTTGTTTAGAAATCTGGGTTTTTGTTGTCCGTTAGTTCATAAATAAAGAAAAATGTCAATTTGGTTCAAATTTGGGGATATTCTTTTCTGGGTTTTACTGATATTAATTTGATTAAAGGGGGATTTTATTTTTTTATTCTTCCAATTTGTTGTTAAGAATTGGGCTGAAATTCTGCTTTAGGGTTATAAATCTAGTAAAACTTGTGTGGATTTATCTTGAATTTAGATTTTTCCAACTGAAACATGTTCGTAGTTCTTGATATTGATAATTTCTTCCTTGTGTGTGTATATTTTACAGTGATTTTGTGGTTTGAAGTTCAACGAATTTAAGGAGAAAATGTCAGGAAAGGGAGGAAAAGGACTATTGGCTGGTAAAACAACGGCGGGTAACAAAGATAAGGATAAGAAGAGGCCTGTTTCTCGCTCTTCTAGGGCTGGTCTTCAGGTAGTCTTTCCTCTTTTTCTCTATATGTTTGTGGATCTTCTTTTGTATAGCTTTATAATTTGCTTAGAAAAGTTCCAAAAGATTAATCATGAGAATAATAGTATGATTAGTTGAATGTGAAATTGTGTTTAGTTAATTAAGGTGTTTCGTTGTTGAAAATATTTGTTCATTTGAGTGAGAGAACTTGTTGAATATATAGATGTTTCAGATGCTTAAACTTCTATCAACAAGTGAAGTTTGAAGTTAATTATTACGGAGTATTGATCTCTCTAGGTGTTTACTTCTGGTTTAAGATATGATACAAACTATTGTGGATTTTTTAATTTAAAGGCTCTGATACCATGTTAGATTTTGTATAAGCCAAAAAGTTTATATGATGATCCCATAAACTAATTGGCACTATCTTTGCTTATTGGCTATATGTGAACTCTAATATGGTATTAGTGTCTTCGATTTAAATTGGACTTGCTTAGTTTGTATTAATGTTCCTGAAAAATAAAATTATTGTTGTTATCAAGAGGCATCTAATCTAACTAAGCATCATCTCTTACCAACATGTGTAGTTTCTAATTTTCTATATACTCAGAAGACAATTTTCTTAAAGAAGTGGAATTAATATTGTATAATGTATTACTAGATGCAATTTGATACTCAAGAGGATTTTGGGAAGAGTGTGTTTGAGGTCTTAAACTATGATTGGAGAAGCCATTATTGCTTATTTTGAATAAATTGTTGAATAGTATGCCTTTATGGGTTGGAGCAATATGTTCAGTTTACTGTTTAGAAATTAAACTATGTGTTGGTTTACAGGAATCCTTGGGCTTAGTTATTAAGCATTTTGCCTAATTTTTGTTATCAAATGACTGTCTATATCTAAATTTGTCAGCAAAGACAACTACCGAATGAATTCAATGGAAGCCACGCTAGTGTTTCACTCATCACCACTCAATGATAAGTGAAACAAATGTGTGGCTTTCATTGAATTATTGTACTAGTCTTTAAGGCAACAATTGAAGAATCACCCCTTTGTTTATTAGTAACTAGCTACAAGTGCATTGGGTAGAAAATATAATTGGAGATTTGGGACAAGGAGAAAGATTGATGATCATGAGAGACATGGTGGACTAATGATGTCTTTTCTTTCTAATGAGCTAAGGTGATATAAACTAATAGAATATGTATAATTATGTAAATTATTATGTAAGATTTAGTCAAATATTCCAATATTGTTAACGGTTACTTATCATTAGAATAATAAACAAACTCCTTAATTGTAGGAGTATGTGTATGTTACGCAAACAAGTTTTAAATCAAGCTTTGTAAACTCTTGTATTCTAGCTTGTTTGCGTAACATACTCCTATAATTGAGGAGTTTGTTTACTATTGTAATGATAAGTAACCATTTATTCTAATTTACATATTCTATCATAAACAAAGAAGGATTTTCGATTTAAAGACCATGATAGAATTGGTAAAAGCCAATTATTATGTTTTCAGAGGATTCATGAACTTGAATTGTCTTCAAAATATACAAATGTTGGGAAAACTTGCAAGTCCACACCTAATTGTAGATCTTTGGCAATAAATGACATTTCATAAGCTAATGTGCATAATCTTCACTCCTTGGCTATGTAAAACCTCTTTCATGGTGTTAATGGCACTGATTTGATTTCAACTTTTCTAGTTTGTATTGCTATTCTAGGTCTAGATATGTTTTAGGCACACTTTCTGTTGAAATGCTTCAGGGTTCTGGGAAATAGTGATACAATCTTAAACTGTTCATAGGTGAATAAGTTATACTTGCTTTATTCAAGATAATTTTTGAATGAGCCTACAATTATCTGAAAGTGGTCAATAACCAAACTAACTAATGAAAGACAGGGATCCCTTGATTATAAGGCACTTCTTCCTTGTAATGTTAGTAGGCATATCTTACCTTTAATTAAGAAACTTTATAACAGTAGAAAGACAACTAACTAATGAATTCAATTGAGAGCCATACACAATTGGTTAACTCATCATTACTCATTAATGAATTGGACAAATGTGTGATTTCCTTTGCATTGTGTCAATAATCTTGTAAGATCAACTATCGAATAATCACCTCTTTGTTTATTAGTAATTAGATACATACTTAATAGCGATAGAATGATGATAGATGTGTTTTGCTCTTAACCCAGAGGTAGAACTTTGTCTAAGTTCAGGTCACCTGAGTTTTAGGTGATGATCACCACCTGCTCGAAATTCTGGGTATTTCAGAATTTTCTTTGTTTATCAGGGACCAATTACCTGTCCAATAAAAGCTGTTATCCCATTGATCACACTTATATTACACATTAGTCAGGAAATCTGGAGTTATTGATAATCTTTTACTATTCCCAAAACTTTCAAAGTTCCTGCTAGATGTTCTAAGGCTCCGTTTGGTAGGGTGTAAAACATGTTTATGGAAAACGATTTTCCCCTTTTCAACCATTTTTTCTTTTTTCTATTAATTTTCTTGTAAGGAACCAAACAAAGGAAAACTAGTTTGGAATTCTGTTTTCCCTTACAAAACAATATTCATTCCCATGGTAATGCAAGTTCACTCAAAATTATGTCTTTTTCTTTATAAATTTTCATCACCACCCATCACCATTTGGGGGAGTGGTATTGCTTTATTAGGTGGGAATGCAAATTTATGAAGAAAAACACAAAGTTTGAGATAAATTTTCATTACCATGGACATCATGATGCTATTTTCTTGCCAAATTAAACTTAGATTTATTCGCAGTTCCCACTGTTTATTACCGGCTACCAAACAGGCCGTCAAAGTTTCTGCTAGATGTTCTAAATGCATATTCCATTTGATGCTCATTTGTGATTCTGAAAACAATTTGCCTTCAGTTTCCCGTTGGTCGAATACACCGACATCTCAAGTCAAGAGCCTCAGCCCACGGCCGTGTAGGTGCAAATGCTGCTGTATACTCTGCTGCTATACTCGAATACTTAACTGCAGAAGTGCTCGAGTTAGCAGGAAATGCAAGCAAAGATCTCAAAGTCAAGAGGATTACACCAAGACATCTACAGCTTGCTATTAGAGGAGATGAGGAGCTTGATACCCTAATTAAGGGAACTATTGCTGGTGGTGGTGTTATTCCTCATATTCACAAATCATTGATTAACAAATCAGTGAAAGAATAAGGATTTGAAATGTGATGATTATAGGAGGTAGAATTAAGTATATGGAATGTGATTTCAGCTGTAATATCTTCCCTTTGGACATCTGCTCTTTTTAGATTGTGATTTTATTAGCTGTTTAGGTAATTGTCAATTTAGTTTAGTTCATTATGGTATTTTTGTGCAGTTCTAACTGGATTTGTCCTCGTAATGTGTGCTTCTTTGGTGATTTGACAATGTATCTTGTTCTATAAAATTTGTGATTTTTTCTTGATTTCTATTGCAAATTAAGCTTTAG

mRNA sequence

TTCGAAAAACCAGAAATTTCATGAAAATTTCATGAAATTGGCGCCTCTTTTAACTCCTCGTTAAAATCAAAACGTAAATTCACCGCCATTAATTTCAAAACCCACTTTCTCTCTCCTCTATTTAATTCATCCCTTTCTTTCTGTCACTCGATTTCCAAAGCTTCTTCCTTTCTCAATTCCCTCACTCCCAGCCAAAGTGATTTTGTGGTTTGAAGTTCAACGAATTTAAGGAGAAAATGTCAGGAAAGGGAGGAAAAGGACTATTGGCTGGTAAAACAACGGCGGGTAACAAAGATAAGGATAAGAAGAGGCCTGTTTCTCGCTCTTCTAGGGCTGGTCTTCAGTTTCCCGTTGGTCGAATACACCGACATCTCAAGTCAAGAGCCTCAGCCCACGGCCGTGTAGGTGCAAATGCTGCTGTATACTCTGCTGCTATACTCGAATACTTAACTGCAGAAGTGCTCGAGTTAGCAGGAAATGCAAGCAAAGATCTCAAAGTCAAGAGGATTACACCAAGACATCTACAGCTTGCTATTAGAGGAGATGAGGAGCTTGATACCCTAATTAAGGGAACTATTGCTGGTGGTGGTGTTATTCCTCATATTCACAAATCATTGATTAACAAATCAGTGAAAGAATAAGGATTTGAAATGTGATGATTATAGGAGGTAGAATTAAGTATATGGAATGTGATTTCAGCTGTAATATCTTCCCTTTGGACATCTGCTCTTTTTAGATTGTGATTTTATTAGCTGTTTAGGTAATTGTCAATTTAGTTTAGTTCATTATGGTATTTTTGTGCAGTTCTAACTGGATTTGTCCTCGTAATGTGTGCTTCTTTGGTGATTTGACAATGTATCTTGTTCTATAAAATTTGTGATTTTTTCTTGATTTCTATTGCAAATTAAGCTTTAG

Coding sequence (CDS)

ATGTCAGGAAAGGGAGGAAAAGGACTATTGGCTGGTAAAACAACGGCGGGTAACAAAGATAAGGATAAGAAGAGGCCTGTTTCTCGCTCTTCTAGGGCTGGTCTTCAGTTTCCCGTTGGTCGAATACACCGACATCTCAAGTCAAGAGCCTCAGCCCACGGCCGTGTAGGTGCAAATGCTGCTGTATACTCTGCTGCTATACTCGAATACTTAACTGCAGAAGTGCTCGAGTTAGCAGGAAATGCAAGCAAAGATCTCAAAGTCAAGAGGATTACACCAAGACATCTACAGCTTGCTATTAGAGGAGATGAGGAGCTTGATACCCTAATTAAGGGAACTATTGCTGGTGGTGGTGTTATTCCTCATATTCACAAATCATTGATTAACAAATCAGTGAAAGAATAA

Protein sequence

MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSVKE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02366.1Spo02366.1mRNA


Homology
[Close]
BLAST of Spo02366.1 vs. NCBI nr
Match: gi|902189497|gb|KNA11384.1| (hypothetical protein SOVF_135760 [Spinacia oleracea])

HSP 1 Score: 257.7 bits (657), Expect = 1.100e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA
Sbjct: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKSVKE
Sbjct: 121 PHIHKSLINKSVKE 134
[Close]
BLAST of Spo02366.1 vs. NCBI nr
Match: gi|695002089|ref|XP_009419817.1| (PREDICTED: histone H2A variant 1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 242.3 bits (617), Expect = 4.900e-61
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLA KTTA NKDKDKK+PVSRSSRAGLQFPVGRIHRHLKSR SA+GRVGA A
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRHLKSRISANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSTKE 134
[Close]
BLAST of Spo02366.1 vs. NCBI nr
Match: gi|731336234|ref|XP_010679145.1| (PREDICTED: probable histone H2A variant 3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.5 bits (615), Expect = 8.400e-61
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLAGKTTAGNK+K+KKRP SRSSRAGLQFPVGRIHRHLK+R SA+GRVGA A
Sbjct: 1   MAGKGGKGLLAGKTTAGNKEKEKKRPTSRSSRAGLQFPVGRIHRHLKTRVSANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS K+
Sbjct: 121 PHIHKSLINKSAKD 134
[Close]
BLAST of Spo02366.1 vs. NCBI nr
Match: gi|720058318|ref|XP_010274247.1| (PREDICTED: probable histone H2A variant 3 [Nelumbo nucifera])

HSP 1 Score: 241.5 bits (615), Expect = 8.400e-61
Identity = 125/134 (93.28%), Postives = 130/134 (97.01%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLAGKTTA NKDKDKK+PVSRSSRAGLQFPVGRIHRHLKSR +A+GRVGA A
Sbjct: 1   MAGKGGKGLLAGKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRHLKSRIAANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS K+
Sbjct: 121 PHIHKSLINKSSKD 134
[Close]
BLAST of Spo02366.1 vs. NCBI nr
Match: gi|743774557|ref|XP_010917635.1| (PREDICTED: probable histone H2A variant 3 [Elaeis guineensis])

HSP 1 Score: 240.4 bits (612), Expect = 1.900e-60
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLA KTTA NKDKDKK+PVSRSSRAGLQFPVGRIHRHLKSR +A+GRVGA A
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRHLKSRIAANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSSKE 134
[Close]
BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVU0_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_135760 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.900e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA
Sbjct: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKSVKE
Sbjct: 121 PHIHKSLINKSVKE 134
[Close]
BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Match: M0S3I3_MUSAM (Histone H2A OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.400e-61
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLA KTTA NKDKDKK+PVSRSSRAGLQFPVGRIHRHLKSR SA+GRVGA A
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRHLKSRISANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSTKE 134
[Close]
BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDF1_BETVU (Histone H2A OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120160 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.900e-61
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLAGKTTAGNK+K+KKRP SRSSRAGLQFPVGRIHRHLK+R SA+GRVGA A
Sbjct: 1   MAGKGGKGLLAGKTTAGNKEKEKKRPTSRSSRAGLQFPVGRIHRHLKTRVSANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS K+
Sbjct: 121 PHIHKSLINKSAKD 134
[Close]
BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q023_ZOSMR (Histone H2A OS=Zostera marina GN=ZOSMA_13G00560 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.500e-60
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGL+AGKTTA NKDKDKK+PVSRSSRAGLQFPVGRIHR LKSR +A+GRVGA A
Sbjct: 1   MAGKGGKGLVAGKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRQLKSRIAANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS K+
Sbjct: 121 PHIHKSLINKSAKD 134
[Close]
BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Match: M0RX30_MUSAM (Histone H2A OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.500e-60
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           M+GKGGKGLLA KTTA NKDKDKK+PVSRSSRAGLQFPVGRIHR LK+R SA+GRVGA A
Sbjct: 1   MAGKGGKGLLAAKTTAANKDKDKKKPVSRSSRAGLQFPVGRIHRQLKTRISANGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSTKE 134
[Close]
BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.600e-59
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAG---NKDKDKKR-PVSRSSRAGLQFPVGRIHRHLKSRASAHGRV 60
           M+GKGGKGLLA KTTA    +KDKDKK+ PVSRSSRAGLQFPVGRIHR LKSRASAHGRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GANAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GA AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSVKE 135
           GGVIPHIHKSLINK+ KE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138
[Close]
BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.300e-58
Identity = 117/136 (86.03%), Postives = 127/136 (93.38%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGN--KDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGA 60
           M+GKGGKGL+A KT A N  KDKDKK+P+SRS+RAG+QFPVGRIHR LK+R SAHGRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  NAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
            AAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSVKE 135
           VIPHIHKSLINK+ KE
Sbjct: 121 VIPHIHKSLINKTTKE 136
[Close]
BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.000e-58
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           MSGKG KGL+ GK +  +KDKDKK+P++RSSRAGLQFPVGR+HR LK+R++AHGRVGA A
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVY+AAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSAKE 134
[Close]
BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.700e-58
Identity = 121/137 (88.32%), Postives = 123/137 (89.78%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGN---KDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVG 60
           M+GKGGKGLLA KTTA     KDK KK PVSRSSRAGLQFPVGRIHR LK R  A+GRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ANAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           A AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSVKE 135
           GVIPHIHKSLINKS KE
Sbjct: 121 GVIPHIHKSLINKSSKE 137
[Close]
BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.600e-57
Identity = 119/139 (85.61%), Postives = 127/139 (91.37%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAG----NKDKDKKR-PVSRSSRAGLQFPVGRIHRHLKSRASAHGR 60
           M+GKGGKGLLA KTTA     +KDKD+K+ PVSRSSRAG+QFPVGRIHR LK R SA+GR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGANAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGA AAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSVKE 135
           GGGVIPHIHKSLINK+ KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139
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BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Match: AT3G54560.1 (histone H2A 11)

HSP 1 Score: 226.9 bits (577), Expect = 7.600e-60
Identity = 117/136 (86.03%), Postives = 127/136 (93.38%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGN--KDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGA 60
           M+GKGGKGL+A KT A N  KDKDKK+P+SRS+RAG+QFPVGRIHR LK+R SAHGRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  NAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
            AAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSVKE 135
           VIPHIHKSLINK+ KE
Sbjct: 121 VIPHIHKSLINKTTKE 136
[Close]
BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Match: AT1G52740.1 (histone H2A protein 9)

HSP 1 Score: 225.7 bits (574), Expect = 1.700e-59
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGANA 60
           MSGKG KGL+ GK +  +KDKDKK+P++RSSRAGLQFPVGR+HR LK+R++AHGRVGA A
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVY+AAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSVKE 135
           PHIHKSLINKS KE
Sbjct: 121 PHIHKSLINKSAKE 134
[Close]
BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Match: AT2G38810.1 (histone H2A 8)

HSP 1 Score: 219.9 bits (559), Expect = 9.200e-58
Identity = 115/136 (84.56%), Postives = 123/136 (90.44%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAG--NKDKDKKRPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGA 60
           M+GKGGKGLLA KTTA   NKD  KK+ +SRSSRAG+QFPVGRIHR LK R SAHGRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  NAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
            AAVY+A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSVKE 135
           VIPHIHKSL+NK  K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136
[Close]
BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Match: AT4G13570.2 (histone H2A 4)

HSP 1 Score: 136.3 bits (342), Expect = 1.300e-32
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 1 

		  

Query: 35  LQFPVGRIHRHLKSRASAHGRVGANAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 94
           ++F V RIH+ LK+R SAH  VGA   VY  +ILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 125
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124
[Close]
BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.100e-29
Identity = 78/134 (58.21%), Postives = 93/134 (69.40%), Query Frame = 1 

		  

Query: 1   MSGKGGKGLLAGKTTAGNKDKDKK-RPVSRSSRAGLQFPVGRIHRHLKSRASAHGRVGAN 60
           MS   G G     TT G + K K  + VSRSS+AGLQFPVGRI R LKS   A  RVGA 
Sbjct: 1   MSTGAGSG-----TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAE-RVGAG 60

Query: 61  AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGG 120
           A VY +A+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GG
Sbjct: 61  APVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGG 120

Query: 121 VIPHIHKSLINKSV 133
           V+P+IH++L+   V
Sbjct: 121 VLPNIHQTLLPSKV 128
The following BLAST results are available for this feature:
BLAST of Spo02366.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902189497|gb|KNA11384.1|1.1e-65100.hypothetical protein SOVF_1357... [more]
gi|695002089|ref|XP_009419817.1|4.9e-6194.0PREDICTED: histone H2A variant... [more]
gi|731336234|ref|XP_010679145.1|8.4e-6192.5PREDICTED: probable histone H2... [more]
gi|720058318|ref|XP_010274247.1|8.4e-6193.2PREDICTED: probable histone H2... [more]
gi|743774557|ref|XP_010917635.1|1.9e-6093.2PREDICTED: probable histone H2... [more]
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BLAST of Spo02366.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVU0_SPIOL7.9e-66100.Histone H2A OS=Spinacia olerac... [more]
M0S3I3_MUSAM3.4e-6194.0Histone H2A OS=Musa acuminata ... [more]
A0A0J8CDF1_BETVU5.9e-6192.5Histone H2A OS=Beta vulgaris s... [more]
A0A0K9Q023_ZOSMR6.5e-6091.7Histone H2A OS=Zostera marina ... [more]
M0RX30_MUSAM6.5e-6092.5Histone H2A OS=Musa acuminata ... [more]
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BLAST of Spo02366.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H2AV1_ORYSJ1.6e-5990.5Probable histone H2A variant 1... [more]
H2AV1_ARATH1.3e-5886.0Histone H2A variant 1 OS=Arabi... [more]
H2AV3_ARATH3.0e-5885.0Probable histone H2A variant 3... [more]
H2AV3_ORYSJ8.7e-5888.3Probable histone H2A variant 3... [more]
H2AV2_ORYSJ5.6e-5785.6Probable histone H2A variant 2... [more]
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BLAST of Spo02366.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G54560.17.6e-6086.0histone H2A 11[more]
AT1G52740.11.7e-5985.0histone H2A protein 9[more]
AT2G38810.19.2e-5884.5histone H2A 8[more]
AT4G13570.21.3e-3275.5histone H2A 4[more]
AT1G08880.13.1e-2958.2Histone superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 25..47
score: 1.9E-42coord: 55..70
score: 1.9E-42coord: 70..83
score: 1.9E-42coord: 111..129
score: 1.9E-42coord: 84..98
score: 1.9
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
score: 4.0
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 19..103
score: 1.4
IPR009072Histone-foldGENE3D1.10.20.10coord: 18..131
score: 3.4
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 7..111
score: 6.1
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..130
score: 1.9E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0032776 DNA methylation on cytosine
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0009202 deoxyribonucleoside triphosphate biosynthetic process
biological_process GO:0009186 deoxyribonucleoside diphosphate metabolic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0048608 reproductive structure development
biological_process GO:0022414 reproductive process
biological_process GO:0009791 post-embryonic development
biological_process GO:0034968 histone lysine methylation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0009909 regulation of flower development
biological_process GO:0007049 cell cycle
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006334 nucleosome assembly
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0006342 chromatin silencing
biological_process GO:0009266 response to temperature stimulus
cellular_component GO:0005840 ribosome
cellular_component GO:0000785 chromatin
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
cellular_component GO:0005773 vacuole
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
RNA-Seq Expression