Spo02389 (gene)

Overview
NameSpo02389
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 2531449 .. 2531807 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAATGTACAGACCCGAAAGAGTGAAAACGTCATTCAAACCAATTTCGCGTAACACCTTACTCCTCTCCTCTCTTGCTCCCCATAGCGCCGCCCAGGCTGCCACTTGCCCAGCCATCTGCCGTCACTGGTTCACCGTCACCGGCCCTCAGGTCCACCACCGTAACCGGATTACAGGTCCACCACCGTAACCGGATTACAGGTCCACCGCCGTCACCGGCTTATAGGTCCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCAGCTCCGGGGATCACCTCACCGCGCGTCCACTATGACGTAGTCAACGATAAGCTGAACTGCTGA

mRNA sequence

ATGTACAATGTACAGACCCGAAAGAGTGAAAACGTCATTCAAACCAATTTCGCGTCCACCACCGTAACCGGATTACAGGTCCACCACCGTAACCGGATTACAGGTCCACCGCCGTCACCGGCTTATAGGTCCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCAGCTCCGGGGATCACCTCACCGCGCGTCCACTATGACGTAGTCAACGATAAGCTGAACTGCTGA

Coding sequence (CDS)

ATGTACAATGTACAGACCCGAAAGAGTGAAAACGTCATTCAAACCAATTTCGCGTCCACCACCGTAACCGGATTACAGGTCCACCACCGTAACCGGATTACAGGTCCACCGCCGTCACCGGCTTATAGGTCCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCGGATTACAGGTTCACCACCGTCACCAGCTCCGGGGATCACCTCACCGCGCGTCCACTATGACGTAGTCAACGATAAGCTGAACTGCTGA

Protein sequence

MYNVQTRKSENVIQTNFASTTVTGLQVHHRNRITGPPPSPAYRSTTVTGLQVHHRHRITGSPPSPAPGITSPRVHYDVVNDKLNC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02389.1Spo02389.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo02389.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02389.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02389.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02389.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0009414 response to water deprivation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0009225 nucleotide-sugar metabolic process
biological_process GO:0006012 galactose metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006508 proteolysis
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
cellular_component GO:0005840 ribosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005576 extracellular region
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0003978 UDP-glucose 4-epimerase activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0050662 coenzyme binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo144040.82Barchart | Table
Spo065710.82Barchart | Table
Spo188740.81Barchart | Table
Spo013980.81Barchart | Table
Spo248740.78Barchart | Table
Spo242130.78Barchart | Table
Spo022870.78Barchart | Table
Spo181440.77Barchart | Table
Spo252060.77Barchart | Table
Spo166940.77Barchart | Table
Spo116430.77Barchart | Table
Spo014030.77Barchart | Table
Spo082580.77Barchart | Table
Spo229390.76Barchart | Table
Spo005800.76Barchart | Table
Spo176620.76Barchart | Table
Spo170680.76Barchart | Table
Spo116790.75Barchart | Table
Spo225050.75Barchart | Table
Spo159940.74Barchart | Table
Spo050900.73Barchart | Table
Spo059490.73Barchart | Table
Spo036260.72Barchart | Table
Spo014910.72Barchart | Table
Spo269940.72Barchart | Table
Spo063180.72Barchart | Table
Spo054150.72Barchart | Table
Spo236220.71Barchart | Table
Spo029280.71Barchart | Table
Spo045270.71Barchart | Table
Spo166920.71Barchart | Table
Spo202840.71Barchart | Table
Spo242030.71Barchart | Table
Spo080370.70Barchart | Table
Spo091390.70Barchart | Table
Spo035730.70Barchart | Table
Spo075930.70Barchart | Table
Spo050640.70Barchart | Table
Spo101470.70Barchart | Table
Spo015460.69Barchart | Table
Spo070170.69Barchart | Table
Spo228910.69Barchart | Table
Spo222150.69Barchart | Table
Spo007180.69Barchart | Table
Spo137890.69Barchart | Table
Spo159020.69Barchart | Table
Spo268490.69Barchart | Table
Spo105650.68Barchart | Table
Spo168940.68Barchart | Table
Spo069440.68Barchart | Table
Spo229360.68Barchart | Table
Spo074170.68Barchart | Table
Spo094950.67Barchart | Table
Spo070160.67Barchart | Table
Spo179500.67Barchart | Table
Spo185740.67Barchart | Table
Spo263750.67Barchart | Table
Spo192900.66Barchart | Table
Spo051140.66Barchart | Table
Spo143800.66Barchart | Table
Spo015350.66Barchart | Table
Spo009680.66Barchart | Table
Spo081800.66Barchart | Table
Spo266390.66Barchart | Table
Spo181430.66Barchart | Table
Spo078210.66Barchart | Table
Spo272850.66Barchart | Table
Spo059350.65Barchart | Table
Spo093760.65Barchart | Table
Spo172440.65Barchart | Table
Spo215670.65Barchart | Table
Spo124380.65Barchart | Table