Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACTCGACCCATTGTAAGTATATACAAGTCCAACCCAACAAATCAAACCAACACTATAATCCATGGGCCACTAACCCACATAATGCAAGCCCAATGGCAAACCCATCCCACTCTCAACCCTACAAATTTCTACCCCCAATTTAAACCCCAGACTCCCATTCGAAACCCTAGAAATTCCTCTTCAGCGCACACTATCTCTCTCTCAACTCCATCGCGCTCTCTCGCTTTGTAGAAACCGCATCATCAACCAACCATGGTAATTCATCATCATCTCCCTTTCTCTCTCCTCTCGCATTTAAATCTTCTGTAAATTTACGAATTTTTTGTTAACAGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGGTGAAATTGATTTTTTATTGTTTTGGTTTTCCGATTTAATTAATATCGTTTTTCGAAAATTAGGGTTTTGATTGTGTTGAAATTGAATTGATTTTCAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGGTATACCTTTTTCTCTTTTTAATTTCTGATTTATGCGGTTGGTGTGATAATTTTTAGCATATTCTTATTTATTAATTTGAGGTGTAAATTTTTATAAATTGAAGGGGCTTGATTATGCCTAACAGGTTATTTTGTTGGATTGAATGTGTATGCTTTAAATTAGGATATAGTGATTCGGATACAAATAGAATTATTATGATTTTTTTGTCAGTTTTAGGAGTTTGGATGATTATTTCTCTATTAGCTTGAATGATTGATTTCTGGAATTGGATCTATTGATTAACTATGTAATTGCAAACTGAGTTTTTGCGTTGAACTATGGATTTATGTGTGAATGATGGACACTTCAACACAATAGAATGACAATTGTTAGGAAAGTGGCAAAGTAATTCCTTTAGCAATAAACCTATTTGTGGATTAATGCTATTTTTTTGGGAGCTACACAACATATGCAATTTCTGTTAGTAGGTAGATATTGAAAGTTCTGATCAGAACTACACTGGTGCATGTTCAGTGATTGTATTATAAGTGTGTTAGTGATCCTGATATGCCGATAATGTCTTACAATAAGATTCCTGCATTGGGACGTGACCTTTCAGTTGAGAATAGAGTGTTGTTTTTGTATACGTAGCTGAACTTTGTATGGTATATGATGTTGTGTCATCAATTCTCTGTTGGTGTCTGGAAACTGTGACCTTCAATTCTGGTATAAATTACTTGTGCTGGTTGTAGATTTATTACCTGCCTCTGTTAAAAAGCTTCAAATGCATTGTGTGATGCTTATTTTTTCATGCCAATTGTTCAATCTCTCATGTATATTAGCTTCCAAGACTCCTTTTTATACATCACTTTTAGCAAGTGATGCATTGCTGGCCTAGTGTGTTTGATCTTATGCAGATTGCATTGAAATTTGTATTTGTGGGGACTCTTATTGTTTGTTCTTGAATATTTCTTCTCAACAGCATTTTTTATCCCTATAATTCCTACTTAGTTTAAATCTGGGAAACTTCTGTAAGCATGTCTCTTTCTTTTATGTTTGTTTATGGTTGTAATTCAATATGATGATTGTGATCCTCTCTTGGCAAGATCTCACATTTCTTAAATTGAGTTTTCCCTTCGTCCTGTAAGCAATATTAGAAATTCTGTAAACTTAACCCACCGTAATTGTTTTCCACAGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGAAGAAGAAATCCTTATCTAGAACTCAGGTTTTTTGTTTGCCATTATGTCTTGTTAGACTTTTAAGTACTATTATTTTTGCAAGGGTTTTAATGTGTTCGAATATACTTTGATTATGCCTATGAATTGAGTTTTGTTGCATTCGGTTGTTGCACATTATGGTACCAGTTTCTAATCGAGCAGAATCTCCACATTAATCTTTTCTTCGTTTTACTACCAAAGCTGTTTATTTTGGTGTACTATATATATTCTTGGCTTAAACTACTAGGTTTTAAGCTTGTGGATTCCTTGTTTATCCATG CCACTCGACCCATTGTAAGTATATACAAGTCCAACCCAACAAATCAAACCAACACTATAATCCATGGGCCACTAACCCACATAATGCAAGCCCAATGGCAAACCCATCCCACTCTCAACCCTACAAATTTCTACCCCCAATTTAAACCCCAGACTCCCATTCGAAACCCTAGAAATTCCTCTTCAGCGCACACTATCTCTCTCTCAACTCCATCGCGCTCTCTCGCTTTGTAGAAACCGCATCATCAACCAACCATGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGAAGAAGAAATCCTTATCTAGAACTCAGGTTTTTTGTTTGCCATTATGTCTTGTTAGACTTTTAAGTACTATTATTTTTGCAAGGGTTTTAATGTGTTCGAATATACTTTGATTATGCCTATGAATTGAGTTTTGTTGCATTCGGTTGTTGCACATTATGGTACCAGTTTCTAATCGAGCAGAATCTCCACATTAATCTTTTCTTCGTTTTACTACCAAAGCTGTTTATTTTGGTGTACTATATATATTCTTGGCTTAAACTACTAGGTTTTAAGCTTGTGGATTCCTTGTTTATCCATG ATGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGA MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02397.1 vs. NCBI nr
Match: gi|902237877|gb|KNA24968.1| (hypothetical protein SOVF_010860 [Spinacia oleracea]) HSP 1 Score: 307.0 bits (785), Expect = 1.900e-80 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
BLAST of Spo02397.1 vs. NCBI nr
Match: gi|731336301|ref|XP_010679183.1| (PREDICTED: 40S ribosomal protein S15 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 291.2 bits (744), Expect = 1.100e-75 Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 1
BLAST of Spo02397.1 vs. NCBI nr
Match: gi|947093068|gb|KRH41653.1| (hypothetical protein GLYMA_08G042300 [Glycine max]) HSP 1 Score: 278.5 bits (711), Expect = 7.200e-72 Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1
BLAST of Spo02397.1 vs. NCBI nr
Match: gi|351722029|ref|NP_001235950.1| (uncharacterized protein LOC100499781 [Glycine max]) HSP 1 Score: 278.5 bits (711), Expect = 7.200e-72 Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1
BLAST of Spo02397.1 vs. NCBI nr
Match: gi|657992836|ref|XP_008388680.1| (PREDICTED: 40S ribosomal protein S15-4 [Malus domestica]) HSP 1 Score: 277.7 bits (709), Expect = 1.200e-71 Identity = 140/155 (90.32%), Postives = 146/155 (94.19%), Query Frame = 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZS4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010860 PE=3 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.300e-80 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F3G9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120450 PE=3 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 7.500e-76 Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: I1KQ69_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G042300 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 5.000e-72 Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: C6SWG3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G234800 PE=2 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 5.000e-72 Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: I1MQW1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G004300 PE=3 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 8.500e-72 Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2) HSP 1 Score: 268.1 bits (684), Expect = 6.100e-71 Identity = 134/155 (86.45%), Postives = 144/155 (92.90%), Query Frame = 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 5.100e-70 Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 2.600e-69 Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 2.600e-69 Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 2.200e-68 Identity = 131/155 (84.52%), Postives = 140/155 (90.32%), Query Frame = 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT1G04270.1 (cytosolic ribosomal protein S15) HSP 1 Score: 262.7 bits (670), Expect = 1.400e-70 Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09510.1 (Ribosomal protein S19 family protein) HSP 1 Score: 262.7 bits (670), Expect = 1.400e-70 Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09490.1 (Ribosomal protein S19 family protein) HSP 1 Score: 246.5 bits (628), Expect = 1.100e-65 Identity = 123/155 (79.35%), Postives = 141/155 (90.97%), Query Frame = 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09500.1 (Ribosomal protein S19 family protein) HSP 1 Score: 246.1 bits (627), Expect = 1.400e-65 Identity = 128/155 (82.58%), Postives = 137/155 (88.39%), Query Frame = 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G43640.1 (Ribosomal protein S19 family protein) HSP 1 Score: 243.0 bits (619), Expect = 1.200e-64 Identity = 120/142 (84.51%), Postives = 129/142 (90.85%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02397.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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