Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAAGTCAGAAAGTCTGTTAGTGGAAGATGGTTAAATTTTTTAATGAATGCTACAGGAAAAAGGAGAAATGATTTGGTAATTGAATTAAATTGACATTAAAAATAATTAAGGTTGGAGAATTAATGAGAAGGTGAAGGTGAAGGAAGATGAAGGATGGGGAATATGAAGTACATGAGAGTAATAGATGGGAGTATGAGACACTTGTAAAGTTACAGATTTGTTAGATTTAATACACGTGTCATCTTAGGAAGAATGGTTATCTTTTTTAAATACTAGGTATAGATTCATTTGACACATTTGGCAATACACAACTTTGACCGTCAATAAATGTAATTATCTATAAAAGAAAAATCATAAAATGGANTATCAATAAAATCGTTTTAATATTTTATATGATTCAGCGTTACATCGCCAACTGAATTAGTGATTTAGGCCCTATTTAGTTCACCTTATTTCAGGACCTTATTACTTATTTCAGATTTAATCAGATCAGATCATACCAGACCAGATCAGATCAGATCAGAAAAAATAAGTTCAGATCAGACCAGACCAGACCAGACCAGATCAGATCAGATCAGACCAGATCATATCATATCAGACCAGACCAGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTATTATTATAAATCAAATGCTAACAAAGTCAAATATTTTACAAATAATTAGTGGGAAGCCGAGATACAATCTGGGGCCCCACTCCCCTGGCTATGCAAAGCCTATCCTAGTGAAAATATGAGCAGCAGCACGAGCCCCAATGTCCTGCGTCCTAGAAAACTTCTGAATCCGCTTCAGCAACGCAACAACATCCTTATCCAGCTCCCCCAAAGAATTAGAGCTTGTATATGTTATTATTATTATTATTACTAGATTTTAGCCCGTGCGATGCACGGTTTTTATTAAATTGTTACGTTAAAATAAAACTCCTATATATATATCAACTGCTATATTTATATTAGATTATATTGGTTTTTTTATTTTTGATTGAATTTCATTTTAGATTTATTTTTTAACTATTATAGTGTTTGATTTTGGATGAAAATGTATATAAGAAATATTAATAATTATATTAATTAATACAAATATCTACGTGGCACCTAATTATTTGTCTATGTTGCATTCGACTTTTTAATTCAAAAATAATTTTGAAGTCCTATTTTTCATTGGCCGAAACCATTAGATTTCCTACGTGGCGCCCTAATATTGGATTAATGTTTGATTTTGGATTGAATTTTATTTTAGATTAGTGTTTGATTTTGGATGAATTTTATTTTAGATTTATTTTTTAATTATTAGAGCGTTTGATTTTGGATGGAATTGTATATATTAGTAATTAATTAATTAATTTAAATATCTACGTGGCACCTAATTAATTATCTACGTGGCACTCGATTTTTTTAATTCAAAAATAAATTAGAAATCTTATTTTTCATTGGCTGAAACCATTAGTAATCCTAGGTGGCGCTCTAATAGTTCAGCANCCCCCCCCCCCCCCCCCAATTATTCTGGTATGGTGAAGCATCAAGCATGCAATGTTTTCTCTGTGGATTTTTTTTCATTTTCTGGATAATTTGGGGTTAATTTGAGTCCTGTAGATTTGGCGGTAAGAAACTGCGGAAATTAGGGTTTAAAATTTGTGCCTCATTTGTGCTAATTTAGTATGACCTGATTGTTAGCTTGTCCATTTCCTTAATCGTTGAGTTTTTGGTGTATTTGATTGAAGTTATGTGAATGTTGAGGTTGAATTGATGTCCTGTGAATGCTGCTTTAATCCCCGAAAATTAGGGTTTTACATTGCGAAGTAAATGTCAACGATGAGATGTTTGTTAATTGTTAGAGTAATTGAATGGAATCTACCAGGCTGAGCTTGTTATCGATTACATTGCCACTGTAGCTACAGATCCTGTATGCACAATCTGTATGAATCTGAATCTGATACTAATTGAAATCTACCCATTTCACTGTCAATTGGAAGATCAATTAGTGAATTATTGTTTATTCTTCTGGTATGTGAACTAATGCAATCTGTATGAATCTACATTATCAGCATTTTGTAAAAATTGGGGGTAGATTTATGTGATAGTATTCTTAACTGGATTGTCTGCTTCTTGGTAAAATTTACAAGAAATGCATTGAGATTATTAAGATTATAATCATGTTTGTGTTGATCACTTTATACCAAGAAATGCTTCTTGGTATGTTGTAATTATTTGTCTAGAAATTCTGGAATTCAAAGAAGTTTATGCAGTATATCTAAGCATTTTGTAAAAATTGGGGAAGTTTACATGAAATGCATTGAGATTATTAAGATTATGGAACATGTTTGTGTTGATCATTTTGGATTGCACAAATCCTATATTACTATAATGATCACTTTATACTAAGAAATGCTTCTTGGTATGTTGTAATTGTTTCTCTAGAAATTCGGAATTTGAAGAAGTTTATGCAGTATATCTACCTACATTGTAAACATTTTGTAAAAATTGGGGAAGTTTACATGAAATGCATTGAGATTATTAAGATTATTGATCATCTTTGTGTTAATCACTTTGGATTTTACTAATCCTCTATTGCTATAATAACAGGTATGAGATGCTATGTGAATTCTTCAATGCAATGGTTAGTTCAATTCGGCTACTCCGATTGAAAAGGCAGCAATCAACTCTTACTAAGCTTGCGAAGAGTATCGAGTCTTTGACTGACAGGTAATTAGCACAAACCCTTTCTTTCCCCCTAATTTCCACTCTCTTAAACAGTTAAACTACAATTCATTATTTATGTATCTGAAATTTATTGGATTTCTATTGTTTGGTATAGGAGGTTTACATTGCATCACTTAGCTCAATTGAAGTACCTAATGCCACAAGTAATCGTGGCAAAGAAAATCCGTGTTCAAGATGAAGAAACAAAATGTATGAAGGAGGAGCTTCTTGTTTCACTAGAGGTTGTGGTTGTGGAAACTGACAAGAATGTCAAAGGTGGTGGTGGTGGTGGATTTTCCCAATTAAAGGAGATATTCCGGTCACAAATCATGGACTTTTACAAAACCCAACATGAGGTATGAACTGGGATTTTCTTGGTTTTTTTCTTGGATTATTTTTTAGGTTTTAATTGAAGGTTGAATTGATAAACTGACTGAATTTATGAACTGGTTTTTTTTTGCAATCAGGATGCTGATGTTCCTGAGGGAGAATTACCTCACCTATTCTATCAACCAAAACAAGAACCCGAAGAAAACATGAATAAAACAACACCTGCAACATTAGCAGCATCACTTTCTGCTCCCTCATTTAAGAGACGCTTCTCATCCATGGCAAACAAACCATCTTCTAGCTTTTCAGAAACTTTCACCAAAGAAACCACTTCTGTTGAAGCTAATGCAACACTGTGTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCTCCATCCTCTAGCTTTTCAGAAACTTTCATCAAAGAAATCACTTCTGTTGAAGCTAATGCAACACTGTTTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCCGCAGAACTTATTTCAACACCTGCAGAACTTGCTTCAACACCTGCAGATCTTGCTTCAACTCCTGCAAGATTAATGGCTGCCACACCTACATTGCGCCCTCCAAAACGCAGTTTGTTTTGCGATTCACCCAACAAATCATCTAAGCGTAGTAAATCCTTAAAGTTTGTGGAAAACAGCATTGATATTGAGGAGGATCAATTCAGCCAAGTTAATCCTACACAAAGCTCCATCATTTCAAAGGATGATGTCCTGGAAATACTTCCCGAAGGACTTTTACAGTCGGTAAGTGGAGTTTTTTACCTTCTTGAAACTTGATTGATTTTGATTGTTTGAATATCTGAAGATTGGTTCTAAAATGAGAATTCCTGTTGCAGTTGTTGGAGAAAGAAAGGAAGAGCATCGAAGAGAAAGACCCAGTTTTTGTACAAGCAAAGAGAAGGCAACAGTTGATAGCTAGTGTACCTAAACTCTTTGACATGATTCTTCTCTTGTTCAAGTCCATCAACCGATCTGTTATCACAAAAGAGGAACTTATTTACAAATTACTATCTGGCCATTTGGAAATTGTTGATAGAGGTAATGATTTTTTACTTCATTTCATCACTTTATTTATAACTGAAACATTCCCTCTTATTGCTGTTCTCACTGTAAACTGTTCTGTTTTTTTTTTTGCAGCTGAGATTGAAGAACAGCTTAACTTGCTACAACAACTTGCCCCAGAATACATATCTGAACAGCTCAGTATCAGTGGAGATACTCTCCTACGGTAAATTTCTTTTACACCTTTCTATACCGTTCATTACACTGTGTTTAGGAACCAAGTTAACTTGGAAATGTGAGGAAAAGTAAAACTAAGTAAATCTGAAGAAATATGTAGAAATCTCCAAATTTTAATTTATTTGGCTAATTATTAAGGAAAATTGGGGAAATTGGAATATCACTTCTTTAATTTTGTTTTCTTTCATTTTCCTTACTTTTTATTTAAATTACGAAACAAGCTAACATTAAGGAATTCCCTATTTCCACAATTTTATTCTCTTTCCCTCATTAAACTACAGTTCCCAAACATACTGTTAGCATTGAACAATCGGATTTACTCCTTACTGAGTTACTGTTTTATTACTGGTTGCTGATGTTTAAATTTGTTGGTTTTTACAGCCTGAACAAATCTTCATGTCATGAATCAATACGCAACAAGTTGTTCGAAGCGAAATGAAACTCAGAAGATTACCCAGAGTTTTGACAGTATCAGAAAAGTAGATGGTTTTTTTTTTAGTTATTTGTAAGTTATTAATCCAGTAGAAGAGCAAAGTGGCTGCTGTATCATGTGAGCTTAATTCCAGCCAATCCAGCCATATTGCATTTTGTACATGCCTACTGACTAAGTGACTAGTGACTATTGTGATAGTGTAATGATCCATTACCCTGATTTTGTATAGAGATTTTCAACTGATTATAATGGAATCCATTGATTATGTCTAAAT ATGGATAAGTCAGAAAGTCTGTATGAGATGCTATGTGAATTCTTCAATGCAATGGTTAGTTCAATTCGGCTACTCCGATTGAAAAGGCAGCAATCAACTCTTACTAAGCTTGCGAAGAGTATCGAGTCTTTGACTGACAGGAGGTTTACATTGCATCACTTAGCTCAATTGAAGTACCTAATGCCACAAGTAATCGTGGCAAAGAAAATCCGTGTTCAAGATGAAGAAACAAAATGTATGAAGGAGGAGCTTCTTGTTTCACTAGAGGTTGTGGTTGTGGAAACTGACAAGAATGTCAAAGGTGGTGGTGGTGGTGGATTTTCCCAATTAAAGGAGATATTCCGGTCACAAATCATGGACTTTTACAAAACCCAACATGAGGATGCTGATGTTCCTGAGGGAGAATTACCTCACCTATTCTATCAACCAAAACAAGAACCCGAAGAAAACATGAATAAAACAACACCTGCAACATTAGCAGCATCACTTTCTGCTCCCTCATTTAAGAGACGCTTCTCATCCATGGCAAACAAACCATCTTCTAGCTTTTCAGAAACTTTCACCAAAGAAACCACTTCTGTTGAAGCTAATGCAACACTGTGTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCTCCATCCTCTAGCTTTTCAGAAACTTTCATCAAAGAAATCACTTCTGTTGAAGCTAATGCAACACTGTTTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCCGCAGAACTTATTTCAACACCTGCAGAACTTGCTTCAACACCTGCAGATCTTGCTTCAACTCCTGCAAGATTAATGGCTGCCACACCTACATTGCGCCCTCCAAAACGCAGTTTGTTTTGCGATTCACCCAACAAATCATCTAAGCGTAGTAAATCCTTAAAGTTTGTGGAAAACAGCATTGATATTGAGGAGGATCAATTCAGCCAAGTTAATCCTACACAAAGCTCCATCATTTCAAAGGATGATGTCCTGGAAATACTTCCCGAAGGACTTTTACAGTCGTTGTTGGAGAAAGAAAGGAAGAGCATCGAAGAGAAAGACCCAGTTTTTGTACAAGCAAAGAGAAGGCAACAGTTGATAGCTAGTGTACCTAAACTCTTTGACATGATTCTTCTCTTGTTCAAGTCCATCAACCGATCTGTTATCACAAAAGAGGAACTTATTTACAAATTACTATCTGGCCATTTGGAAATTGTTGATAGAGCTGAGATTGAAGAACAGCTTAACTTGCTACAACAACTTGCCCCAGAATACATATCTGAACAGCTCAGTATCAGTGGAGATACTCTCCTACGCCTGAACAAATCTTCATGTCATGAATCAATACGCAACAAGTTGTTCGAAGCGAAATGAAACTCAGAAGATTACCCAGAGTTTTGACAGTATCAGAAAAGTAGATGGTTTTTTTTTTAGTTATTTGTAAGTTATTAATCCAGTAGAAGAGCAAAGTGGCTGCTGTATCATGTGAGCTTAATTCCAGCCAATCCAGCCATATTGCATTTTGTACATGCCTACTGACTAAGTGACTAGTGACTATTGTGATAGTGTAATGATCCATTACCCTGATTTTGTATAGAGATTTTCAACTGATTATAATGGAATCCATTGATTATGTCTAAAT ATGGATAAGTCAGAAAGTCTGTATGAGATGCTATGTGAATTCTTCAATGCAATGGTTAGTTCAATTCGGCTACTCCGATTGAAAAGGCAGCAATCAACTCTTACTAAGCTTGCGAAGAGTATCGAGTCTTTGACTGACAGGAGGTTTACATTGCATCACTTAGCTCAATTGAAGTACCTAATGCCACAAGTAATCGTGGCAAAGAAAATCCGTGTTCAAGATGAAGAAACAAAATGTATGAAGGAGGAGCTTCTTGTTTCACTAGAGGTTGTGGTTGTGGAAACTGACAAGAATGTCAAAGGTGGTGGTGGTGGTGGATTTTCCCAATTAAAGGAGATATTCCGGTCACAAATCATGGACTTTTACAAAACCCAACATGAGGATGCTGATGTTCCTGAGGGAGAATTACCTCACCTATTCTATCAACCAAAACAAGAACCCGAAGAAAACATGAATAAAACAACACCTGCAACATTAGCAGCATCACTTTCTGCTCCCTCATTTAAGAGACGCTTCTCATCCATGGCAAACAAACCATCTTCTAGCTTTTCAGAAACTTTCACCAAAGAAACCACTTCTGTTGAAGCTAATGCAACACTGTGTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCTCCATCCTCTAGCTTTTCAGAAACTTTCATCAAAGAAATCACTTCTGTTGAAGCTAATGCAACACTGTTTGATTTTGCTTCAACACCTGCAAAACTTGCTTCAATTCCCGCAGAACTTATTTCAACACCTGCAGAACTTGCTTCAACACCTGCAGATCTTGCTTCAACTCCTGCAAGATTAATGGCTGCCACACCTACATTGCGCCCTCCAAAACGCAGTTTGTTTTGCGATTCACCCAACAAATCATCTAAGCGTAGTAAATCCTTAAAGTTTGTGGAAAACAGCATTGATATTGAGGAGGATCAATTCAGCCAAGTTAATCCTACACAAAGCTCCATCATTTCAAAGGATGATGTCCTGGAAATACTTCCCGAAGGACTTTTACAGTCGTTGTTGGAGAAAGAAAGGAAGAGCATCGAAGAGAAAGACCCAGTTTTTGTACAAGCAAAGAGAAGGCAACAGTTGATAGCTAGTGTACCTAAACTCTTTGACATGATTCTTCTCTTGTTCAAGTCCATCAACCGATCTGTTATCACAAAAGAGGAACTTATTTACAAATTACTATCTGGCCATTTGGAAATTGTTGATAGAGCTGAGATTGAAGAACAGCTTAACTTGCTACAACAACTTGCCCCAGAATACATATCTGAACAGCTCAGTATCAGTGGAGATACTCTCCTACGCCTGAACAAATCTTCATGTCATGAATCAATACGCAACAAGTTGTTCGAAGCGAAATGA MDKSESLYEMLCEFFNAMVSSIRLLRLKRQQSTLTKLAKSIESLTDRRFTLHHLAQLKYLMPQVIVAKKIRVQDEETKCMKEELLVSLEVVVVETDKNVKGGGGGGFSQLKEIFRSQIMDFYKTQHEDADVPEGELPHLFYQPKQEPEENMNKTTPATLAASLSAPSFKRRFSSMANKPSSSFSETFTKETTSVEANATLCDFASTPAKLASIPPSSSFSETFIKEITSVEANATLFDFASTPAKLASIPAELISTPAELASTPADLASTPARLMAATPTLRPPKRSLFCDSPNKSSKRSKSLKFVENSIDIEEDQFSQVNPTQSSIISKDDVLEILPEGLLQSLLEKERKSIEEKDPVFVQAKRRQQLIASVPKLFDMILLLFKSINRSVITKEELIYKLLSGHLEIVDRAEIEEQLNLLQQLAPEYISEQLSISGDTLLRLNKSSCHESIRNKLFEAK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02418.1 vs. NCBI nr
Match: gi|902203439|gb|KNA14551.1| (hypothetical protein SOVF_106550 [Spinacia oleracea]) HSP 1 Score: 833.9 bits (2153), Expect = 1.300e-238 Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 1
BLAST of Spo02418.1 vs. NCBI nr
Match: gi|731336395|ref|XP_010679230.1| (PREDICTED: CDT1-like protein a, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 487.6 bits (1254), Expect = 2.300e-134 Identity = 302/471 (64.12%), Postives = 346/471 (73.46%), Query Frame = 1
BLAST of Spo02418.1 vs. NCBI nr
Match: gi|902186449|gb|KNA10682.1| (hypothetical protein SOVF_142060 [Spinacia oleracea]) HSP 1 Score: 390.2 bits (1001), Expect = 5.000e-105 Identity = 255/455 (56.04%), Postives = 317/455 (69.67%), Query Frame = 1
BLAST of Spo02418.1 vs. NCBI nr
Match: gi|731368448|ref|XP_010696152.1| (PREDICTED: CDT1-like protein a, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 384.4 bits (986), Expect = 2.800e-103 Identity = 253/474 (53.38%), Postives = 315/474 (66.46%), Query Frame = 1
BLAST of Spo02418.1 vs. NCBI nr
Match: gi|297744124|emb|CBI37094.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 292.4 bits (747), Expect = 1.400e-75 Identity = 206/471 (43.74%), Postives = 289/471 (61.36%), Query Frame = 1
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4X6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106550 PE=4 SV=1) HSP 1 Score: 833.9 bits (2153), Expect = 9.200e-239 Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 1
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9E6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120950 PE=4 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 1.600e-134 Identity = 302/471 (64.12%), Postives = 346/471 (73.46%), Query Frame = 1
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTS9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142060 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 3.500e-105 Identity = 255/455 (56.04%), Postives = 317/455 (69.67%), Query Frame = 1
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B829_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178160 PE=4 SV=1) HSP 1 Score: 384.4 bits (986), Expect = 1.900e-103 Identity = 253/474 (53.38%), Postives = 315/474 (66.46%), Query Frame = 1
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Match: A0A067JRG9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17709 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 5.600e-71 Identity = 201/494 (40.69%), Postives = 289/494 (58.50%), Query Frame = 1
BLAST of Spo02418.1 vs. ExPASy Swiss-Prot
Match: CDT1A_ARATH (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.500e-61 Identity = 174/471 (36.94%), Postives = 267/471 (56.69%), Query Frame = 1
BLAST of Spo02418.1 vs. ExPASy Swiss-Prot
Match: CDT1B_ARATH (CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=1 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 7.700e-29 Identity = 130/472 (27.54%), Postives = 228/472 (48.31%), Query Frame = 1
BLAST of Spo02418.1 vs. TAIR (Arabidopsis)
Match: AT2G31270.1 (homolog of yeast CDT1 A) HSP 1 Score: 238.4 bits (607), Expect = 8.600e-63 Identity = 174/471 (36.94%), Postives = 267/471 (56.69%), Query Frame = 1
BLAST of Spo02418.1 vs. TAIR (Arabidopsis)
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B) HSP 1 Score: 129.8 bits (325), Expect = 4.300e-30 Identity = 130/472 (27.54%), Postives = 228/472 (48.31%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02418.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02418.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02418.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo02418.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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