Spo02439 (gene) | SpinachBase

Overview


Name	Spo02439
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Sex-linked protein 9
Location	SpoScf_00951 : 135513 .. 140212 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATGGTCGGTTACACATTGTTTGTGGTTCTAAGATTGATTGATTTAAGTTTGTATTTTTGTGTTCTATTAATCGAGTGACTCTCGAGTTCGTGATAAAATTGAGACCACTTTACTATTCTAAGACCTCGTGCAAATAAATTTTTTTAGACTTATACTTCCTCCGTTTTTTAATACTCGCAACGTTTATTACATTCACGCATGTCAATGCACAACTTTGGTCATTTATATCTTAAATTCTCTTTATGTAAAAATTATAAAAAGTTGATATTTTGAAAATACACATTGAGACGAATCTAACAAGATCTCACATGACTATGTTATATCTTATATAAAAAATACCAAGAATAGTCAAAGTAAATTATATGAATAGTGTAAAAAGTCCAAATGTTGCGAGTATTAAAAGACGGAGGAAGTCCAAATTACTTAATATTAATAGAATACTCCGTATAAATAAATTTAACGGGTTGGATACGGTCTGGTTATGGGTTTCATATTTTAACAACATTTCGGGTATCAGGTCGGGTTTGCTTAAAGTACAGGTCGGTTTCTCAGGTCGGGTCAACTTTTGACAGCTCTAGATGTAGCTATGTAGGAATGTAAGATTGAGGTCTTGTGGGTGTTAACAATTTCTGGTTAGAAATGGCATATGTCTCTCTAAAAGTCCAAAAACTTAATACTTTATCCACAGAATCCACGTGTCCGAAGACCATTGAACAGATAATCATCCAAGAAATCTTCACTCTAACGTGATCCACATCAGATGTAAAATATGTTAATATCTGGCTTTGCCAAATTGGAAGCTGTCTGAGTGTTGATCAAAAGAGAAAAGACCACAAAAATGGCAGCTAACAGTAGTTTTGCAGGCACTTCAACTGTGGTTGGTTTGGGCACCACCACTCTCTCTCGCTCTTCCGCCAGATCTACGGCCTTCACTTCAGGTAATTAACGCTAATTATTGATTTCTTGGATTTTAATTAATTATTATATTCACTCGTATTTGTTGATGCAAATATATATATGCAATGTATTTCAGGCTTCTTGAAGTCTAAGGTCGCAGCAAGGAACCCTCTAAGCCTAGCCTGTGCTTCATCCGGAGGAAGATTTACATGGTAACTTATCAATTCCACCTTAACTTTACATTTTTTAAATAACTACTTATTGTATCACAACTTAAACAACTTTGTACATGAATATAGTGACCAGAAGCTCACATTCAAGCTTGACCGATAACCTAAACAACTTTATACAATATATTGCTTTTATTGTTTTTTTTACGAGGAAAGAAAAATAGGCGGAATACATAACTCGCCCTTTCGGATGAAATATAGTGATTGAGATAAAAAAATATTGAATCGGTGATGACTGCTAATTCAATTATGATGCACCCGTTTGTTTTCAACATTCTAACTTTTACGGGGTGCTCGTGAACGATTGTTACACAAGTGTATATATATGCATCTGTAAAAGTATCATAATTTTTTTTTGTCATTGAGTTTGAATAATTTATTTTAGGAAAATTTATAAATTACTACGTAGCTGTAATGGTCAAATGTTACCTATTTTTCTAACAATTGATCGATGTCAATGGCTACTATAGTCGATATTTTGGCCAATTAGTCTACTAAAAACATTATATTAATCCTTAAATATAATTTAATCATTCTAAGTAATTAATAAAGTTAAAATCCCAAAATTAAGTCTCAAAAATTACCCAAAATTAATTTCTTTTTTTCAAAAAAAAAAATCCATAATGATCGATCGGGGAAAAAAATACCGAAACCCGAAATTAAATCCCGATTAATGTTTGTAATTTCAGGATTTTTTAAATTTTTTGGGGTAAATTCGTGTACTTTTGGGATTTAATTTTATTAATTAATTAAAATGATTAAATCACAATTAAAGGTTAATTATGATGTCATTCATGGATTAATTGTCTGAAAAATATGGACTAAGATATCAATTGACATCAATGGTTAAATAGATAGTAATTGACAATTTCTAACAATCTAGGTTTTAATTGATAAATTCCTTAACAACTTATGTAGTAATTGACAAAATTTCGTTTCTTTTAATTGCAAAATGGGATGCTGCTTGAACATTTTTATTTGGGTTGTTATTTCTCATTTGGACTTGATATTCATAGTTGAATAATTTTTTTTTTTGCATGATTCATTGAAATGTATTGAACATATAATTATTAGTGGACATAATTGACTGAAAATTCGAGGTTGAGCCTGAAGTTGACTATATTGAGTTTTTCGGTTGTACACAAACAAAACAATACTACATTTGGCTTCATCAACTTATATTACTAGTCCTTTAAAAAAAAAAACTTATATTACTAGTATTGTTTTTGAAATATATCTTAGCTTCTGCATTGGCATTTGTATGATTGTATCTACTTATAAAGGTAAGTTATACTGGTGCATTTGATGGCATTTTTTCTTGGTGCGAATAAGCCACAAGGGCAATATAAATTACAAATGGGGGCGGGGAGATTCGAACTTGAGAGCTATTGTACACAAGCCCTCAGTCTTAACAACTAGGCCAAGACATCATTGGTTGCATTTGATGGCATTTGCTTTGCTCTTATCGCTTATCGTCATTTTTGGTTAAAGATCGAAAAGAGTGGGTATGTATAGTTTAGTTGGTGACATAATACTAAGATAAAATTTTGTGTAACATATATAGCTTTGAAAGAAATTGGCTAAGGAAAGACTTGAATGTGATCGGATTTGGGTTGATTGGGTGGATAGCTCCATCAAGTGTACCGATCATAAATGGTAACAGTCTCACGGGTCTCTTTTTCTCAAGCATTGGGGAGGAGTTGTCTCACTTCCCCAGTCCTCCCGCCCTTGCTTCTCAGTTCTGGTGAGTATATATCTTTGCTTTATACATACCAATTAAGTATACAACTACATTTTTGGGTTATTAATTTGAGATTTATGTTAATAGGTTGTGGTTGGTACTGTGGCATCTGGGGCTGTTCTTGTGCCTTACTTTTGGGCAGATTGGGTTCAAGGGGAGGACTGAGGAGTACTTTTGACTTCATTCTCTTTTTTTCTTCTTTACATGAAATCATCTACTCTACTTAATTATTATGTAATTATGTACCATTACTACTATGTAGTAGAAGTATGTACTATCTCTTACCAAGTCCTTGTTTGATTAATCAGAATCATCTACTCTACTTATTACGGAGTATGTAACAATCTCTTGCCTGTTTGCTCCAGATTCATCTTCTCAACTCCCAATCCCACGCAATTAACTCAAAATTTCATTGAAAATTGTCAGTATAAATTATCTACCTATAAGTTAAATAAATAAGATCCTGTGTCATCTTCGACAAATTAATTATTATTTAGTACTTATATGGCTACATAAGCGTGACATATAAACTGATGCAATATAGCTACATAAGCATGTACTCTACGATGAATTCAACAAATGTAGGAGGTCGTTTGACGCCTTGACATTACACAAAAACCATCATTTTTTACCCACCTTTTACTATTACTCCATCCGTCCCGGAATACTTGACATGTTTTTCTTATCGGGCCGTCCCTTAATAATTGACCTGTTTCTAAAAATGGGAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCTCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTATATCTTTACTACTCCCTTCGTATTTTTTTAAGAGATACACTTGCCTTTTCCTGCCGTATTTTTTTAAGAGATACACTTGCCATTTTTGGTAACTTATCAACCCCACCACCTAATTAAATAATATATCTACTACACTTTATGACCCACCATCCAATTAAAAAATAATTTTACAACTACACCCACCCCACCCCCACCTCCACTTGTTCAAAAGGACATGGTCCCCAATGTACTTATTTATTAAAATATCTACCCCAACCCCACTTCTTTTATTCTTCGTAAGACCTGTGCCCAACCAAGTGTATCTCTTAAAAAAATACGGAGGGAGTATCTATCTACCTATAATTATATACTAAAAGACAAATCAAGAATGACAAATGTCATCTCCTGGTGCGTCCTTAGTTGTTTTTTAAACTAAATTATAGCCCGTGCGATGCATAAATTCTATTAAATTATTAAGTGTTAAAACAAAACTCCTAGATATACCAACTCCTATGTAACAACATTGTCATTTTACAACATGCATATTCATTTAATTAATTAATTAATTAAATTGTGAAGTTGTGAGGTATTATGGACTATTTGATAAGGGACACCAAAAATATAATTACTAAAATGCCCTCAGCTCTTCCCTTACATAATAGAGATATTCACATACTACAAACTCAAATCAGGCAAATATATATCATAATGCCCTATTAACTCAAATTAGGCAAAAATCATAATGGCCTTAAATGCAAAATAAAAAACAAACAAAAAACTTTGTTACATGCGTTAGTCTAAAACGCCCATATTAACTTATATCACACTAATTTTAAAATATAATAAAAAGATAAAAGGTGAAATCAGTAAATAGCCCACCAAAGGTGAA

mRNA sequence

ATTATGGTCGGTTACACATTGTTTGTGGTTCTAAGATTGATTGATTTAAGTTTGTATTTTTGTGTTCTATTAATCGAGTGACTCTCGAGTTCGTGATAAAATTGAGACCACTTTACTATTCTAAGACCTCGTGCAAATAAATTTTTTTAGACTTATACTTCCTCCGTTTTTTAATACTCGCAACGTTTATTACATTCACGCATGTCAATGCACAACTTTGGTCATTTATATCTTAAATTCTCTTTATGTAAAAATTATAAAAAGTTGATATTTTGAAAATACACATTGAGACGAATCTAACAAGATCTCACATGACTATGTTATATCTTATATAAAAAATACCAAGAATAGTCAAAGTAAATTATATGAATAGTGTAAAAAGTCCAAATGTTGCGAGTATTAAAAGACGGAGGAAGTCCAAATTACTTAATATTAATAGAATACTCCGTATAAATAAATTTAACGGGTTGGATACGGTCTGGTTATGGGTTTCATATTTTAACAACATTTCGGGTATCAGGTCGGGTTTGCTTAAAGTACAGGTCGGTTTCTCAGGTCGGGTCAACTTTTGACAGCTCTAGATGTAGCTATGTAGGAATGTAAGATTGAGGTCTTGTGGGTGTTAACAATTTCTGGTTAGAAATGGCATATGTCTCTCTAAAAGTCCAAAAACTTAATACTTTATCCACAGAATCCACGTGTCCGAAGACCATTGAACAGATAATCATCCAAGAAATCTTCACTCTAACGTGATCCACATCAGATGTAAAATATGTTAATATCTGGCTTTGCCAAATTGGAAGCTGTCTGAGTGTTGATCAAAAGAGAAAAGACCACAAAAATGGCAGCTAACAGTAGTTTTGCAGGCACTTCAACTGTGGTTGGTTTGGGCACCACCACTCTCTCTCGCTCTTCCGCCAGATCTACGGCCTTCACTTCAGGCTTCTTGAAGTCTAAGGTCGCAGCAAGGAACCCTCTAAGCCTAGCCTGTGCTTCATCCGGAGGAAGATTTACATGCTTTGAAAGAAATTGGCTAAGGAAAGACTTGAATGTGATCGGATTTGGGTTGATTGGGTGGATAGCTCCATCAAGTGTACCGATCATAAATGGTAACAGTCTCACGGGTCTCTTTTTCTCAAGCATTGGGGAGGAGTTGTCTCACTTCCCCAGTCCTCCCGCCCTTGCTTCTCAGTTCTGGTTGTGGTTGGTACTGTGGCATCTGGGGCTGTTCTTGTGCCTTACTTTTGGGCAGATTGGGTTCAAGGGGAGGACTGAGGAGTACTTTTGACTTCATTCTCTTTTTTTCTTCTTTACATGAAATCATCTACTCTACTTAATTATTATGTAATTATGTACCATTACTACTATGTAGTAGAAGTATGTACTATCTCTTACCAAGTCCTTGTTTGATTAATCAGAATCATCTACTCTACTTATTACGGAGTATGTAACAATCTCTTGCCTGTTTGCTCCAGATTCATCTTCTCAACTCCCAATCCCACGCAATTAACTCAAAATTTCATTGAAAATTGTCAGTATAAATTATCTACCTATAAGTTAAATAAATAAGATCCTGTGTCATCTTCGACAAATTAATTATTATTTAGTACTTATATGGCTACATAAGCGTGACATATAAACTGATGCAATATAGCTACATAAGCATGTACTCTACGATGAATTCAACAAATGTAGGAGGTCGTTTGACGCCTTGACATTACACAAAAACCATCATTTTTTACCCACCTTTTACTATTACTCCATCCGTCCCGGAATACTTGACATGTTTTTCTTATCGGGCCGTCCCTTAATAATTGACCTGTTTCTAAAAATGGGAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCTCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTATATCTTTACTACTCCCTTCGTATTTTTTTAAGAGATACACTTGCCTTTTCCTGCCGTATTTTTTTAAGAGATACACTTGCCATTTTTGGTAACTTATCAACCCCACCACCTAATTAAATAATATATCTACTACACTTTATGACCCACCATCCAATTAAAAAATAATTTTACAACTACACCCACCCCACCCCCACCTCCACTTGTTCAAAAGGACATGGTCCCCAATGTACTTATTTATTAAAATATCTACCCCAACCCCACTTCTTTTATTCTTCGTAAGACCTGTGCCCAACCAAGTGTATCTCTTAAAAAAATACGGAGGGAGTATCTATCTACCTATAATTATATACTAAAAGACAAATCAAGAATGACAAATGTCATCTCCTGGTGCGTCCTTAGTTGTTTTTTAAACTAAATTATAGCCCGTGCGATGCATAAATTCTATTAAATTATTAAGTGTTAAAACAAAACTCCTAGATATACCAACTCCTATGTAACAACATTGTCATTTTACAACATGCATATTCATTTAATTAATTAATTAATTAAATTGTGAAGTTGTGAGGTATTATGGACTATTTGATAAGGGACACCAAAAATATAATTACTAAAATGCCCTCAGCTCTTCCCTTACATAATAGAGATATTCACATACTACAAACTCAAATCAGGCAAATATATATCATAATGCCCTATTAACTCAAATTAGGCAAAAATCATAATGGCCTTAAATGCAAAATAAAAAACAAACAAAAAACTTTGTTACATGCGTTAGTCTAAAACGCCCATATTAACTTATATCACACTAATTTTAAAATATAATAAAAAGATAAAAGGTGAAATCAGTAAATAGCCCACCAAAGGTGAA

Coding sequence (CDS)

ATGGCAGCTAACAGTAGTTTTGCAGGCACTTCAACTGTGGTTGGTTTGGGCACCACCACTCTCTCTCGCTCTTCCGCCAGATCTACGGCCTTCACTTCAGGCTTCTTGAAGTCTAAGGTCGCAGCAAGGAACCCTCTAAGCCTAGCCTGTGCTTCATCCGGAGGAAGATTTACATGCTTTGAAAGAAATTGGCTAAGGAAAGACTTGAATGTGATCGGATTTGGGTTGATTGGGTGGATAGCTCCATCAAGTGTACCGATCATAAATGGTAACAGTCTCACGGGTCTCTTTTTCTCAAGCATTGGGGAGGAGTTGTCTCACTTCCCCAGTCCTCCCGCCCTTGCTTCTCAGTTCTGGTTGTGGTTGGTACTGTGGCATCTGGGGCTGTTCTTGTGCCTTACTTTTGGGCAGATTGGGTTCAAGGGGAGGACTGAGGAGTACTTTTGA

Protein sequence

MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCFERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLVLWHLGLFLCLTFGQIGFKGRTEEYF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02439.1	Spo02439.1	mRNA

Homology

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BLAST of Spo02439.1 vs. NCBI nr
Match: gi|902196626|gb|KNA13155.1| (hypothetical protein SOVF_119330 [Spinacia oleracea])

HSP 1 Score: 297.4 bits (760), Expect = 1.400e-77
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60
           MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF
Sbjct: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60

Query: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120
           ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL
Sbjct: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120

Query: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           WLVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 148

[Close]

BLAST of Spo02439.1 vs. NCBI nr
Match: gi|731366292|ref|XP_010694990.1| (PREDICTED: photosystem I subunit O [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 257.7 bits (657), Expect = 1.300e-65
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1


		  
Query: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60
           MAANS FA +STVVGLGT+ L RS ++ST  TSGFLKS VAARNPL LACASSGG+FTCF
Sbjct: 1   MAANS-FAASSTVVGLGTSHLHRSLSKSTNLTSGFLKSTVAARNPLRLACASSGGKFTCF 60

Query: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120
           ERNWLR DLNVIGFGLIGW+APSSVP INGNSL+GLFFSSIGEELSHFP+PPAL SQFWL
Sbjct: 61  ERNWLRTDLNVIGFGLIGWLAPSSVPAINGNSLSGLFFSSIGEELSHFPTPPALTSQFWL 120

Query: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           WLVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 147

[Close]

BLAST of Spo02439.1 vs. NCBI nr
Match: gi|296785409|gb|ADH43621.1| (sex-linked protein 9 [Silene latifolia])

HSP 1 Score: 243.8 bits (621), Expect = 1.900e-61
Identity = 119/147 (80.95%), Postives = 134/147 (91.16%), Query Frame = 1


		  
Query: 3   ANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTC-FE 62
           A SSFA +STVVGLGT+TLSRS A+ST  +SGFLK KVAA NPL  AC +SGGRFTC F+
Sbjct: 2   AASSFAASSTVVGLGTSTLSRSYAKSTTLSSGFLKLKVAAVNPLRQACGTSGGRFTCSFQ 61

Query: 63  RNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLW 122
           R+WLR+DLNVIGFGLIGW+APSS+P I+GNSL+GLFFSSIGEEL+HFP+PPA+ SQFWLW
Sbjct: 62  RDWLRRDLNVIGFGLIGWLAPSSIPAIDGNSLSGLFFSSIGEELAHFPTPPAVTSQFWLW 121

Query: 123 LVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           LVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 122 LVLWHLGLFLCLTFGQIGFKGRTEEYF 148

[Close]

BLAST of Spo02439.1 vs. NCBI nr
Match: gi|297525845|gb|ADI45844.1| (sex-linked protein 9, partial [Silene vulgaris])

HSP 1 Score: 232.3 bits (591), Expect = 5.600e-58
Identity = 113/142 (79.58%), Postives = 130/142 (91.55%), Query Frame = 1


		  
Query: 5   SSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTC-FERN 64
           SSFA ++TVVGLGT+T+SRS A+ST  +SGFLKSKVAA NPL  A  +SGGRFTC F+R+
Sbjct: 2   SSFAASATVVGLGTSTISRSYAKSTPLSSGFLKSKVAAVNPLRQAWGTSGGRFTCSFQRD 61

Query: 65  WLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLV 124
           WLR+DLNVIGFGLIGW+APSS+P I+GNSL+GLFFSSIGEEL+HFP+PPA+ SQFWLWLV
Sbjct: 62  WLRRDLNVIGFGLIGWLAPSSIPAIDGNSLSGLFFSSIGEELAHFPTPPAVTSQFWLWLV 121

Query: 125 LWHLGLFLCLTFGQIGFKGRTE 146
           LWHLGLFLCLTFGQIGFKGRTE
Sbjct: 122 LWHLGLFLCLTFGQIGFKGRTE 143

[Close]

BLAST of Spo02439.1 vs. NCBI nr
Match: gi|1021045689|gb|KZN03470.1| (hypothetical protein DCAR_012226 [Daucus carota subsp. sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.400e-56
Identity = 112/146 (76.71%), Postives = 129/146 (88.36%), Query Frame = 1


		  
Query: 8   AGTSTVVGLGTTTLSR-----SSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCFER 67
           A TST+VGLGT++LS      S+ ++ + TSGFL+S VAARNPL LA A SGG+FTCFE+
Sbjct: 3   ATTSTIVGLGTSSLSSPSHLVSAKQTVSLTSGFLRSPVAARNPLRLAQA-SGGKFTCFEQ 62

Query: 68  NWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWL 127
           NWLR+DLNVIGFGLIGW+APSS+PIING+SLTGLFFSSIG EL+HFPSPPAL SQFWLWL
Sbjct: 63  NWLRRDLNVIGFGLIGWLAPSSIPIINGDSLTGLFFSSIGTELAHFPSPPALTSQFWLWL 122

Query: 128 VLWHLGLFLCLTFGQIGFKGRTEEYF 149
           V WHLGLF+CLTFGQIGFKGRTE+YF
Sbjct: 123 VTWHLGLFICLTFGQIGFKGRTEDYF 147

[Close]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0W9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119330 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.900e-78
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1


		  
Query: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60
           MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF
Sbjct: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60

Query: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120
           ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL
Sbjct: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120

Query: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           WLVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 148

[Close]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096780 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.700e-66
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1


		  
Query: 1   MAANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCF 60
           MAANS FA +STVVGLGT+ L RS ++ST  TSGFLKS VAARNPL LACASSGG+FTCF
Sbjct: 1   MAANS-FAASSTVVGLGTSHLHRSLSKSTNLTSGFLKSTVAARNPLRLACASSGGKFTCF 60

Query: 61  ERNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWL 120
           ERNWLR DLNVIGFGLIGW+APSSVP INGNSL+GLFFSSIGEELSHFP+PPAL SQFWL
Sbjct: 61  ERNWLRTDLNVIGFGLIGWLAPSSVPAINGNSLSGLFFSSIGEELSHFPTPPALTSQFWL 120

Query: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           WLVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 121 WLVLWHLGLFLCLTFGQIGFKGRTEEYF 147

[Close]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Match: G5DXC3_SILLA (Photosystem I subunit O (Fragment) OS=Silene latifolia PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.400e-62
Identity = 119/145 (82.07%), Postives = 134/145 (92.41%), Query Frame = 1


		  
Query: 5   SSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTC-FERN 64
           SSFA +STVVGLGT+TLSRS A+ST  +SGFLKSKVAA NPL  AC +SGGRFTC F+R+
Sbjct: 2   SSFAASSTVVGLGTSTLSRSYAKSTTLSSGFLKSKVAAVNPLRQACGTSGGRFTCSFQRD 61

Query: 65  WLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLV 124
           WLR+DLNVIGFGLIGW+APSS+P I+GNSL+GLFFSSIGEEL+HFP+PPA+ SQFWLWLV
Sbjct: 62  WLRRDLNVIGFGLIGWLAPSSIPAIDGNSLSGLFFSSIGEELAHFPTPPAVTSQFWLWLV 121

Query: 125 LWHLGLFLCLTFGQIGFKGRTEEYF 149
           LWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 122 LWHLGLFLCLTFGQIGFKGRTEEYF 146

[Close]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Match: D7RWA2_SILLA (Sex-linked protein 9 OS=Silene latifolia PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.300e-61
Identity = 119/147 (80.95%), Postives = 134/147 (91.16%), Query Frame = 1


		  
Query: 3   ANSSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTC-FE 62
           A SSFA +STVVGLGT+TLSRS A+ST  +SGFLK KVAA NPL  AC +SGGRFTC F+
Sbjct: 2   AASSFAASSTVVGLGTSTLSRSYAKSTTLSSGFLKLKVAAVNPLRQACGTSGGRFTCSFQ 61

Query: 63  RNWLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLW 122
           R+WLR+DLNVIGFGLIGW+APSS+P I+GNSL+GLFFSSIGEEL+HFP+PPA+ SQFWLW
Sbjct: 62  RDWLRRDLNVIGFGLIGWLAPSSIPAIDGNSLSGLFFSSIGEELAHFPTPPAVTSQFWLW 121

Query: 123 LVLWHLGLFLCLTFGQIGFKGRTEEYF 149
           LVLWHLGLFLCLTFGQIGFKGRTEEYF
Sbjct: 122 LVLWHLGLFLCLTFGQIGFKGRTEEYF 148

[Close]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Match: D7RW11_SILVU (Sex-linked protein 9 (Fragment) OS=Silene vulgaris PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.900e-58
Identity = 113/142 (79.58%), Postives = 130/142 (91.55%), Query Frame = 1


		  
Query: 5   SSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTC-FERN 64
           SSFA ++TVVGLGT+T+SRS A+ST  +SGFLKSKVAA NPL  A  +SGGRFTC F+R+
Sbjct: 2   SSFAASATVVGLGTSTISRSYAKSTPLSSGFLKSKVAAVNPLRQAWGTSGGRFTCSFQRD 61

Query: 65  WLRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLV 124
           WLR+DLNVIGFGLIGW+APSS+P I+GNSL+GLFFSSIGEEL+HFP+PPA+ SQFWLWLV
Sbjct: 62  WLRRDLNVIGFGLIGWLAPSSIPAIDGNSLSGLFFSSIGEELAHFPTPPAVTSQFWLWLV 121

Query: 125 LWHLGLFLCLTFGQIGFKGRTE 146
           LWHLGLFLCLTFGQIGFKGRTE
Sbjct: 122 LWHLGLFLCLTFGQIGFKGRTE 143

[Close]

BLAST of Spo02439.1 vs. ExPASy Swiss-Prot
Match: PSAO_ARATH (Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.400e-54
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 1


		  
Query: 5   SSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCFERNW 64
           ++FA  STV+GLG      SS  +  F+S FLK  ++A+NPL LA AS GGR TCFERNW
Sbjct: 3   ATFATPSTVIGLGG-----SSITTKPFSSSFLKPTLSAKNPLRLAGAS-GGRVTCFERNW 62

Query: 65  LRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLVL 124
           LR+DLNV+GFGLIGW+APSS+P ING SLTGLFF SIG EL+HFP+PPAL SQFWLWLV 
Sbjct: 63  LRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLVT 122

Query: 125 WHLGLFLCLTFGQIGFKGRTEEYF 149
           WHLGLFLCLTFGQIGFKGRTE+YF
Sbjct: 123 WHLGLFLCLTFGQIGFKGRTEDYF 140

[Close]

BLAST of Spo02439.1 vs. TAIR (Arabidopsis)
Match: AT1G08380.1 (photosystem I subunit O)

HSP 1 Score: 211.5 bits (537), Expect = 3.600e-55
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 1


		  
Query: 5   SSFAGTSTVVGLGTTTLSRSSARSTAFTSGFLKSKVAARNPLSLACASSGGRFTCFERNW 64
           ++FA  STV+GLG      SS  +  F+S FLK  ++A+NPL LA AS GGR TCFERNW
Sbjct: 3   ATFATPSTVIGLGG-----SSITTKPFSSSFLKPTLSAKNPLRLAGAS-GGRVTCFERNW 62

Query: 65  LRKDLNVIGFGLIGWIAPSSVPIINGNSLTGLFFSSIGEELSHFPSPPALASQFWLWLVL 124
           LR+DLNV+GFGLIGW+APSS+P ING SLTGLFF SIG EL+HFP+PPAL SQFWLWLV 
Sbjct: 63  LRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLVT 122

Query: 125 WHLGLFLCLTFGQIGFKGRTEEYF 149
           WHLGLFLCLTFGQIGFKGRTE+YF
Sbjct: 123 WHLGLFLCLTFGQIGFKGRTEDYF 140

The following BLAST results are available for this feature:

BLAST of Spo02439.1 vs. NCBI nr
BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
BLAST of Spo02439.1 vs. ExPASy Swiss-Prot
BLAST of Spo02439.1 vs. TAIR (Arabidopsis)

BLAST of Spo02439.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902196626\|gb\|KNA13155.1\|	1.4e-77	100.	hypothetical protein SOVF_1193...	[more]
gi\|731366292\|ref\|XP_010694990.1\|	1.3e-65	86.4	PREDICTED: photosystem I subun...	[more]
gi\|296785409\|gb\|ADH43621.1\|	1.9e-61	80.9	sex-linked protein 9 [Silene l...	[more]
gi\|297525845\|gb\|ADI45844.1\|	5.6e-58	79.5	sex-linked protein 9, partial ...	[more]
gi\|1021045689\|gb\|KZN03470.1\|	1.4e-56	76.7	hypothetical protein DCAR_0122...	[more]

BLAST of Spo02439.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R0W9_SPIOL	9.9e-78	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BAP5_BETVU	8.7e-66	86.4	Uncharacterized protein OS=Bet...	[more]
G5DXC3_SILLA	3.4e-62	82.0	Photosystem I subunit O (Fragm...	[more]
D7RWA2_SILLA	1.3e-61	80.9	Sex-linked protein 9 OS=Silene...	[more]
D7RW11_SILVU	3.9e-58	79.5	Sex-linked protein 9 (Fragment...	[more]

BLAST of Spo02439.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PSAO_ARATH	6.4e-54	72.2	Photosystem I subunit O OS=Ara...	[more]

BLAST of Spo02439.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G08380.1	3.6e-55	72.2	photosystem I subunit O	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017498	Photosystem I PsaO	TIGRFAMs	TIGR03059	TIGR03059	coord: 70..148 score: 3.4
None	No IPR available	PANTHER	PTHR36311	FAMILY NOT NAMED	coord: 5..148 score: 2.6
None	No IPR available	PANTHER	PTHR36311:SF1	PHOTOSYSTEM I SUBUNIT O	coord: 5..148 score: 2.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16925	0.72	Barchart \| Table
Spo10927	0.69	Barchart \| Table
Spo15812	0.69	Barchart \| Table
Spo25087	0.66	Barchart \| Table