Spo02517 (gene)

Overview
NameSpo02517
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTransmembrane protein, putative
Locationchr3 : 6227945 .. 6228226 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA

mRNA sequence

ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA

Coding sequence (CDS)

ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA

Protein sequence

MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGLIFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02517.1Spo02517.1mRNA


Homology
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|902224196|gb|KNA19716.1| (hypothetical protein SOVF_059010 [Spinacia oleracea])

HSP 1 Score: 185.7 bits (470), Expect = 3.800e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

		  

Query: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60
          MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL
Sbjct: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60

Query: 61 IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV 94
          IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV
Sbjct: 61 IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV 93

BLAST of Spo02517.1 vs. NCBI nr
Match: gi|870864902|gb|KMT15969.1| (hypothetical protein BVRB_3g051520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.8 bits (395), Expect = 1.900e-35
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1

		  

Query: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60
          ME+NTA+TTTPTPTGKL+MVANY+GASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL
Sbjct: 1  MEDNTAITTTPTPTGKLFMVANYVGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60

Query: 61 IFNHSTRHDDLRFVLPAPPSTI---KPSPSVDSLPV 94
          IFNHSTRHDD RF LPAPP+ +     S SVDSLPV
Sbjct: 61 IFNHSTRHDDPRFNLPAPPAILALPNTSRSVDSLPV 96

BLAST of Spo02517.1 vs. NCBI nr
Match: gi|743831933|ref|XP_010934838.1| (PREDICTED: uncharacterized protein LOC105054904 [Elaeis guineensis])

HSP 1 Score: 69.3 bits (168), Expect = 4.000e-9
Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1

		  

Query: 16 KLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDE---EDAMDRGLIFNHSTRHDDLR 75
          KL  +AN+LGASV SAFF SLERCSCINLST+DN+DE   E+A DR L+      HD   
Sbjct: 11 KLDRLANWLGASVSSAFFASLERCSCINLSTTDNEDEAKPEEAKDRPLMLTKPISHD--- 70

Query: 76 FVLPAPPSTIKP---SPSVDSLP 93
              AP    KP   +P  D LP
Sbjct: 71 ----APDEAPKPVLQNPDADKLP 86

BLAST of Spo02517.1 vs. NCBI nr
Match: gi|743852637|ref|XP_010940436.1| (PREDICTED: uncharacterized protein LOC105059012 [Elaeis guineensis])

HSP 1 Score: 68.6 bits (166), Expect = 6.800e-9
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1

		  

Query: 16 KLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDE---EDAMDRGLIFNHSTRHDDLR 75
          KL  +AN++GASV SAFF SLERCSCINLST+DN+DE   EDA DR L+      HD   
Sbjct: 11 KLDRMANWVGASVSSAFFASLERCSCINLSTTDNEDEAKAEDAKDRPLMLPKPIVHD--- 70

Query: 76 FVLPAPPSTIKPSP---SVDSLP 93
              AP    KP P     D LP
Sbjct: 71 ----APDEAAKPGPQNAGTDKLP 86

BLAST of Spo02517.1 vs. NCBI nr
Match: gi|763774456|gb|KJB41579.1| (hypothetical protein B456_007G110300 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 1.500e-8
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1

		  

Query: 16 KLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGLIFNHSTRHDD 71
          KL  +AN++G S+ SAFF SLERCSCINLST+D DDEE+A DR L+      HD+
Sbjct: 12 KLDRMANWVGTSMASAFFASLERCSCINLSTTDFDDEEEAYDRPLVLTKPLIHDE 66

BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJM6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059010 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.600e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

		  

Query: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60
          MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL
Sbjct: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60

Query: 61 IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV 94
          IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV
Sbjct: 61 IFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV 93

BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CV87_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051520 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.300e-35
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1

		  

Query: 1  MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60
          ME+NTA+TTTPTPTGKL+MVANY+GASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL
Sbjct: 1  MEDNTAITTTPTPTGKLFMVANYVGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGL 60

Query: 61 IFNHSTRHDDLRFVLPAPPSTI---KPSPSVDSLPV 94
          IFNHSTRHDD RF LPAPP+ +     S SVDSLPV
Sbjct: 61 IFNHSTRHDDPRFNLPAPPAILALPNTSRSVDSLPV 96

BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SBD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G110300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-8
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1

		  

Query: 16 KLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGLIFNHSTRHDD 71
          KL  +AN++G S+ SAFF SLERCSCINLST+D DDEE+A DR L+      HD+
Sbjct: 12 KLDRMANWVGTSMASAFFASLERCSCINLSTTDFDDEEEAYDRPLVLTKPLIHDE 66

BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: K3YX85_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_018881mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1

		  

Query: 21 ANYLGASVVSAFFTSLERCSCINLSTSDN---DDEEDAMDRGLIFNHSTRHDDLRFVLPA 78
          A ++G SV SAFF SLERCSCINLST D+   DD+E+A DR LI + + RHDD     PA
Sbjct: 5  ATWVGTSVASAFFASLERCSCINLSTDDDDDRDDDEEAKDRPLILSSAPRHDDAAAAKPA 64

BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R554_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G151100 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1

		  

Query: 16 KLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGLIFNHSTRHDDLRFVL 75
          KL  +A ++GAS+ SAFF SLERCSCINLST+D DDEE+A DR L+F     HD+ +   
Sbjct: 12 KLDRMATWVGASMASAFFASLERCSCINLSTTDFDDEEEAKDRLLMFIKPVVHDEPQ-SQ 71

Query: 76 PAPPSTIKPS 86
          P P +  +P+
Sbjct: 72 PDPAAANRPT 80

BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Match: AT4G10810.1 (unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.500e-9
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

		  

Query: 4  NTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDE-EDAMDRGLIF 63
          +TA   +     KL   A+++  +V+SAFF SLERCSC+NLSTSD+DDE E++ +R L  
Sbjct: 12 STASNLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPLAL 71

Query: 64 NHSTRHDDL 72
          + +   DD+
Sbjct: 72 SAAPHPDDI 80

BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Match: AT4G24026.1 (unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.100e-8
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1

		  

Query: 5  TAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEED 55
          T+  +T T   K+   A+++ A+V+SAFFTSLERC+C+NLSTS +DD++D
Sbjct: 8  TSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDD 57

The following BLAST results are available for this feature:
BLAST of Spo02517.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902224196|gb|KNA19716.1|3.8e-44100.hypothetical protein SOVF_0590... [more]
gi|870864902|gb|KMT15969.1|1.9e-3584.3hypothetical protein BVRB_3g05... [more]
gi|743831933|ref|XP_010934838.1|4.0e-953.0PREDICTED: uncharacterized pro... [more]
gi|743852637|ref|XP_010940436.1|6.8e-953.0PREDICTED: uncharacterized pro... [more]
gi|763774456|gb|KJB41579.1|1.5e-860.0hypothetical protein B456_007G... [more]
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BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RJM6_SPIOL2.6e-44100.Uncharacterized protein OS=Spi... [more]
A0A0J8CV87_BETVU1.3e-3584.3Uncharacterized protein OS=Bet... [more]
A0A0D2SBD6_GOSRA1.1e-860.0Uncharacterized protein OS=Gos... [more]
K3YX85_SETIT1.4e-858.3Uncharacterized protein OS=Set... [more]
A0A0D2R554_GOSRA1.8e-852.8Uncharacterized protein OS=Gos... [more]
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BLAST of Spo02517.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G10810.15.5e-944.9unknown protein[more]
AT4G24026.12.1e-852.0unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34061FAMILY NOT NAMEDcoord: 15..82
score: 4.2

RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo215000.68Barchart | Table
Spo220170.66Barchart | Table
Spo048050.65Barchart | Table