Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA ATGGAGGAAAACACCGCCATGACTACCACCCCTACCCCAACCGGCAAGCTCTACATGGTGGCGAACTATCTCGGCGCAAGCGTGGTCTCCGCCTTCTTCACCTCCTTAGAACGGTGTTCCTGCATCAATCTCAGCACCTCCGACAACGACGATGAAGAAGACGCTATGGATCGCGGCTTGATCTTCAACCATTCCACTCGCCACGATGATCTTCGATTCGTTCTTCCTGCTCCTCCTTCTACGATCAAACCTTCTCCCTCCGTCGATTCGCTTCCCGTTTAA MEENTAMTTTPTPTGKLYMVANYLGASVVSAFFTSLERCSCINLSTSDNDDEEDAMDRGLIFNHSTRHDDLRFVLPAPPSTIKPSPSVDSLPV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|902224196|gb|KNA19716.1| (hypothetical protein SOVF_059010 [Spinacia oleracea]) HSP 1 Score: 185.7 bits (470), Expect = 3.800e-44 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|870864902|gb|KMT15969.1| (hypothetical protein BVRB_3g051520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 156.8 bits (395), Expect = 1.900e-35 Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|743831933|ref|XP_010934838.1| (PREDICTED: uncharacterized protein LOC105054904 [Elaeis guineensis]) HSP 1 Score: 69.3 bits (168), Expect = 4.000e-9 Identity = 44/83 (53.01%), Postives = 51/83 (61.45%), Query Frame = 1
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|743852637|ref|XP_010940436.1| (PREDICTED: uncharacterized protein LOC105059012 [Elaeis guineensis]) HSP 1 Score: 68.6 bits (166), Expect = 6.800e-9 Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1
BLAST of Spo02517.1 vs. NCBI nr
Match: gi|763774456|gb|KJB41579.1| (hypothetical protein B456_007G110300 [Gossypium raimondii]) HSP 1 Score: 67.4 bits (163), Expect = 1.500e-8 Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJM6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059010 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 2.600e-44 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CV87_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051520 PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 1.300e-35 Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SBD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G110300 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.100e-8 Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: K3YX85_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_018881mg PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8 Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R554_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G151100 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8 Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Match: AT4G10810.1 (unknown protein) HSP 1 Score: 57.4 bits (137), Expect = 5.500e-9 Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1
BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Match: AT4G24026.1 (unknown protein) HSP 1 Score: 55.5 bits (132), Expect = 2.100e-8 Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02517.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02517.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02517.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo02517.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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