Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCAAGTCTCAACGAGAGAAATAAAAAATAAGAATAGTTGGAGTTGGTGAAGCTCAGAATTCAATCTTTCAGATCATCGACAAAATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAGTTAGTTCAACTCCTCTTCTCTTCAATTTTCGCTATTAATCGGTTTTAATCTCTAATTTATCGGTATATAATACAACAATTTTGTCAAAATCAAACTTAATTACAAAAAAAATCATCAACTTCGTCGAACAAAAGCATTTGTAAATCTATGGCCAAAAAATTCAGTGTCAATGATTGTAGTTCAGTTTTAGTAGAAAAGTTATTTTGGATCAATTGAAATCAAGGCAAGTGGTCTTAATCATATGTCAATTTCAACTCGGAATGTTCATCAGATTGAGCTGGTTTTCAATAGAATTTTTTCTAAATTTTGTTATCCATGTGGACAGACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGGTAAATAATTCAAGTAATCACCTTTTTTGTTCTTGCCATTGTTTATAACTTATTACCTCTGTCCCAAATTAGTTGTTACACTTACCTTTGCATAATAAGTGGTTGTTTGGTTATCAATTGTTATTTTATTGAAAAAGTAGATGTGATAGGAGTTAATGGAGTATTTTTTTTAATTGAAATGAGAGAGGGTGGGGGATAGAGACAATATAATAATTGTGGAGTCATTCCTAATTTAGAAGTATAACAACGTAGACGAAAAAGGGAAGTGTAACAATTAATATGGGACGGAGGGATTACCATTTTGGTCTTAAGAACTTAAGAATGTTTGGTTGCTTATGATGAGAGATAAGAGATTTAACTGCCAGTTTTCGCAGAGTAGGAGTATTCACACTAGTTCGAGGTTTTGTCGTAAATATCCAACTTAATATCACTATGGTGTATGTTACGTTTATATAGTGATAAATTATTCATGCCAAAGAAAGCTAGAAACAAGAGCTAATTTTACCTCGATATGATTCTTAGGAAAAGTTATTAGTGGTGCTTGATCGATTGTAGCCTCTTAGAAAGTTATTTAACTTAACCAGAAACAACTCCCTTCAATTTCTAGGATAGTTTTAAACTTTGGTTTTTCACGAAATACCCCTTGGTTTTCACAAAATTCACCAAATACACCCGACTTTTCAAAATACGCCAAATATCCCTAAATTTCAATAATATTCACCAAATACCCTAATAGCGTCATCAACCCCAAAACAACACAGTTAACATCTAACTAGCAATTGTACCCATGCAATATATATAAAATGTGAAAAACTTATCGCTTGATATACAATATTTAGGTATCATAAAATATAGTTTTGTTTTTATTGTACAATCACAAATATTTGGTTAGTGTAAGAATATAAATAACTAGAAAGTAGAAACACTTTTATATTTATATTTATTTTTATTTTTATAATTTGTTGGTTTATACTATTAATATGGAAGGCATTACATGCCAAGCTTGGCCAACAATGGTTATAGTAGCATAATGATGAGTATAAATCACATTATGCTAAATTTAAGAAACTCATCTTTTTTAAGAAACTCACCATGCCACTAAAGCCAAGATACAAACTCATCTTTTTTAAGAAGGCCTTGTTTAGCCATGGAATTTGCATATATTTGAATCCCGACTTTTGTACAAGATGCTAATTCCCGGTCCATTTACCAACGTTCCATGAATGAAATTAATGGTAAAATTTAGATTGTAAGGGCCCTTGATTTCTCCATTACACCATTTGACAGCGTTAACCGAGTCCGATTCCACAATGAGACTTGAGTGATTCAGACGCTCGAAATTGAGGAAAATCTTGAGTGTTCTATAGATGGCAAGAACCTCCGCGTTATTGATTTTCATATAGGGAATGAGGCTTGAGAAACATTTTATGTTTATTACTCTTTTTCTACTTTAAGGTTATTATAGAATCAGGCTAAACAAAATTCAGGAGTAACAATCAATCAACGACAATGGTAATGTGATATACAATATATTTCTTCTAAAATAGCAAAGAAAAATGATTATTAATTAAAATAAATGGGAAAATTTAAGACGTAATCATAGAAGAAGTGGAAGACTGGAAGGTACATAAAATAAAAGCATATTACCTCTAAAAATGTATGTTGATTGTGTGAATGATATAACGAAAAATGGTTGGGAGTCAAATTTATTTATAAGGGGGCATGAGAGATGAAAGGTTGATGGTTTATTGGAAAAATGTTGAGTTTTCTTTTACTCTTACTCCCTCCGTCCCTTAATACTCGCACCGCTTTCCTTTTCGGGTCGTCCCTTAATACTTGCACCGTTTCTATAAATAGAAATTTTTATTACTATTATATTGTTTCTCACACTTACCTACTACCCCACCTACACCCCTATTATTTACAAAAAATTATTTAAAAATTCACATCCTCCACTCACCACTCCCCACCTCCACATTTCCCACTAACAATATTAAAAAAATACTCCACTATCAACTAACACCATTAAATTAATAAGTCAATTCAAATGTCTTAAACTCCGCACCGGTGCGAGTATTAAGGGACGGAGGGAGTATTATTTTTTGAAGTTAAGAATTTAAAATATTATTAAGTATAAGTACTAACGCTTATTGATTTGTCATTATATATTTCTATGCTTTTATTATGGATGTCCTTTTGAGTTTTTTTTTTCTTTTTTTATATACAAGGGTGTCTTTTGAGTTTTCACAATTTTAATACAAAGTACTAATATTGAATTAATGAGTCAATCAAAACCGAAAAATAAAGGGAAAAAAGATGGAGATGATGGGTAAGTAAACACATGTCACTATGGTTTGAGTTTTTAAATACAACAAGGTATAGATGGATAGGTTAACCACTAACCCCCTAATTAACCCACCCATTAACCCACTAACCCACCCATTTTCTTTTCCCTCTCCCCCTTCCTCCTTCCCTTGACCTATCGTCGAAAACCCAAGAAAATCAGTCGCTAGCGACCCCAACCATCTTCTTTCTCTCCTTCGTCCTCGTTGAACCCGAACCCGAACCCGAACCCAAACCTAAACCTCATTCCTCTTTATGTAGTTGAAACAGATGGTGATTTGGTGAGGAGAGATATGGAGTTTAGAGCAAGGATGAATTATATATGAGTGTGCCTAGTTTTTTCAGGTTGTCCAACCTCACTCGATATGATGAAATCTCCATTGAGTCTGTGTACCGGTGTTACCTACGACCGCACTAGCATCCAATGGTGCCTAGACACCGGCAACAACACGTGTCCTGCTACTATGCAGGTTCTACACACCACACCAAGGATGTTGTCCCTAATCATACCCTTCAACGACCCATTCAGGTCTGGTCCACCAACAACCACCACCCTTCTCATTCTCTCTCCTCTGCTCTCGTGTCCCGATGGCATTTTATTTGAGAGTGTTGTTGGCAGGGTGTTCAAAACAGATGGTAACTTGGTGAGGAAAGATGTTGAGTTGTGAGAGATTAGATGATGGGGACAGTGCCCACATCGAGTTCTTGTTGATGTTGTCGATCTCCATCATCTTCAAATCCCTCAACAATTAATCAAGAACATTAGGGAAATTCCTTCCCAGATGTTTTCAACTAGAGGAGAGAAAAAAAACGGGGAAGGGGAGAGGAGAGAAATTGGGCGGCGACGGCTGAAGGGCGGAGCTGGCAGGGGGCTCGCAGGGGTGGTGGTGGTGGTGGTGAAGGAAAGGGAAGGGGTTAGTGTGTGGTTAATTAGGGGGGGTTTAATGGGTGGGTCTATTAGATATTAATTTGGGGTTGATGACGTCATTAAGAGAATTTGGTGAATTTTATTGAATGTTAGGGGTATTTAGTGAATTTTGAAAAGTCGAGGGTTATTTAGTGAATTTTGTGAAAACTGAGGGATATTTGATGAAAACCGTTTGAACTTTTATTTCCTCCAATTAACCAAGTGTGTGCGAAAGTAAGTAACCAAACACTAATTTTCAATTGAAACATTTAGCTAAAATAAAATTTACAAGAGCTATTGACACAATACTGAAGATTGATTCATTTCTTGTCTGTGTTTCCGGTGCTATTATAAGATTCTGATTATAATTTTTTTTTTATGTTTTATTGTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAAGTTATGTCTCAACATCTGCCATGGTGTAACTGAGCAACATTTTACCAATTTCATATTTAGGTGGAAAAGGGCATAATTGGGCTATATCAGTGTGCCAAACCTCTTGGAAAGTTGCTAGAGAATGACATTAATCTAGCAAATGACGAGTGAAAACTCAAATAAAATAAGGTTTGAGTTGTTATGCAACATTTGTAATGTTTATAATCTATTTCTTTTGAAGCCTCTCTTATGTAGTTATGAAAGATTTAAGAATGCTGTTACTTTGTGTTCTTCAGTCGGAGAAACAGAAACAGAAACAGGTCCATACTAACTGTATTCATAATTCTCGGTCAAGTTGCTTGTAAAATTGCAAGTTTGTCTCTTGCCTCGGATAAACTTTATTTTTTTTGGTGTTAACACCCGGTTCACCCTTAGGAGTAATCCGGATTTATGGCGAGTTCTGGGTGGATAGGTTTCAGTCCCCTCCTAATTGTTGTTGCGGGCGATCAAACACGAGTTCTCCCTACCAAGTTTAGCCCCAATCACTACTGAATTAACAGACAATTGGTTAAACTTTATCGCACACTATAAATTGGATGGTGGAGGACACGATAGTTTCCACTACTGCTACTGAGCAAACAAAGTATTTCAG TCAAGTCTCAACGAGAGAAATAAAAAATAAGAATAGTTGGAGTTGGTGAAGCTCAGAATTCAATCTTTCAGATCATCGACAAAATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAAGTTATGTCTCAACATCTGCCATGGTGTAACTGAGCAACATTTTACCAATTTCATATTTAGGTGGAAAAGGGCATAATTGGGCTATATCAGTGTGCCAAACCTCTTGGAAAGTTGCTAGAGAATGACATTAATCTAGCAAATGACGAGTGAAAACTCAAATAAAATAAGGTTTGAGTTGTTATGCAACATTTGTAATGTTTATAATCTATTTCTTTTGAAGCCTCTCTTATGTAGTTATGAAAGATTTAAGAATGCTGTTACTTTGTGTTCTTCAGTCGGAGAAACAGAAACAGAAACAGGTCCATACTAACTGTATTCATAATTCTCGGTCAAGTTGCTTGTAAAATTGCAAGTTTGTCTCTTGCCTCGGATAAACTTTATTTTTTTTGGTGTTAACACCCGGTTCACCCTTAGGAGTAATCCGGATTTATGGCGAGTTCTGGGTGGATAGGTTTCAGTCCCCTCCTAATTGTTGTTGCGGGCGATCAAACACGAGTTCTCCCTACCAAGTTTAGCCCCAATCACTACTGAATTAACAGACAATTGGTTAAACTTTATCGCACACTATAAATTGGATGGTGGAGGACACGATAGTTTCCACTACTGCTACTGAGCAAACAAAGTATTTCAG ATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAA MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSSTGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTPLN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02577.1 vs. NCBI nr
Match: gi|902231653|gb|KNA22349.1| (hypothetical protein SOVF_035040 [Spinacia oleracea]) HSP 1 Score: 468.4 bits (1204), Expect = 7.600e-129 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1
BLAST of Spo02577.1 vs. NCBI nr
Match: gi|902177833|gb|KNA09031.1| (hypothetical protein SOVF_157430 [Spinacia oleracea]) HSP 1 Score: 414.8 bits (1065), Expect = 1.000e-112 Identity = 216/248 (87.10%), Postives = 226/248 (91.13%), Query Frame = 1
BLAST of Spo02577.1 vs. NCBI nr
Match: gi|731354808|ref|XP_010688798.1| (PREDICTED: succinate dehydrogenase cytochrome b560 subunit-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 287.0 bits (733), Expect = 3.200e-74 Identity = 159/243 (65.43%), Postives = 189/243 (77.78%), Query Frame = 1
BLAST of Spo02577.1 vs. NCBI nr
Match: gi|661891451|emb|CDP05333.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 117.9 bits (294), Expect = 2.500e-23 Identity = 71/143 (49.65%), Postives = 82/143 (57.34%), Query Frame = 1
BLAST of Spo02577.1 vs. NCBI nr
Match: gi|927682219|gb|ALE29231.1| (succinate dehydrogenase subunit 3 (mitochondrion) [Heuchera parviflora var. saurensis]) HSP 1 Score: 107.1 bits (266), Expect = 4.500e-20 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035040 PE=4 SV=1) HSP 1 Score: 468.4 bits (1204), Expect = 5.300e-129 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR71_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157430 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 7.000e-113 Identity = 216/248 (87.10%), Postives = 226/248 (91.13%), Query Frame = 1
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRS3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203710 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 2.200e-74 Identity = 159/243 (65.43%), Postives = 189/243 (77.78%), Query Frame = 1
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A068UCG8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020337001 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.800e-23 Identity = 71/143 (49.65%), Postives = 82/143 (57.34%), Query Frame = 1
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0M4MES9_9MAGN (Succinate dehydrogenase subunit 3 OS=Heuchera parviflora var. saurensis GN=sdh3 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 3.100e-20 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: SDH31_ARATH (Succinate dehydrogenase subunit 3-1, mitochondrial OS=Arabidopsis thaliana GN=SDH3-1 PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.100e-15 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: SDH32_ARATH (Succinate dehydrogenase subunit 3-2, mitochondrial OS=Arabidopsis thaliana GN=SDH3-2 PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.100e-15 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: C560_MARPO (Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha GN=SDH3 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.600e-9 Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1
BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Match: AT4G32210.1 (succinate dehydrogenase 3-2) HSP 1 Score: 85.1 bits (209), Expect = 6.400e-17 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Match: AT5G09600.1 (succinate dehydrogenase 3-1) HSP 1 Score: 85.1 bits (209), Expect = 6.400e-17 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02577.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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