Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTAGAGTGCATACTTCCATGTGTTCTTAGTACATAAGAATATAAATGATATAAATACAAAAGAAATGGGACGAATAAGGATGAGGATATATCCAATTAAGATTATAGCACCAACGGACCACCACAAAATCAGATTGTTCACTAACCAAAATATCTTCACCATGGCATCTTTTATGGTCCACCACTTTAAACAAAAACATTAATCCCATCTTCTGCAATCAAAGAACTGCAGTTTTCTAACCATAGTGTTCTAAATTTGAAGCATTGGATTTAAACAAAATGGCCACTTTCACTTCAATTACTCAACACCAGTCAATTTCGTCGTCATTGTACCAAAAATTTCATGAATCAACCCATATTTACTCCTCAAAATCTAGTCAGTCATCTTCTCTGATGGTCAGCTTAGGAAGAACTCCTGCAGGTAGTTTACACTATCGCGGCTCACCAGTGGGATTAAGCATCCGAAATGCAGCAACTAAACAAGCTAAATCTCCAGGTATTTTGGGTCTATGTTCTTCATAATGATAAATTCGGGGATTAGCGTCCCGTTTGGTAGCCGGTAATAAACGGTGGGAATGGGAATAAATCAAAGTGTTGAAAAAAACATCATGGTGTCCATGGTAATGAATTGTATCTCATACTCGGTGTTTTTCTTCATAAATTTGCATTACCATCCATTACTACTCCCCAAATGATAACGGATGGTAATGGAAATTTATATAAAAAAAGGATATGATTTTGAGTGAACTACCATTACCATGGGAATGAATATTAATTTTCCATACAAATTTACATACAAATTCATTCCCATTTACACCATTTATGGCCGGCTACCAAAGGGGCCGTAAGGAGTTAAGGACTTACTTGATTGCAGGGATTTTATATGATCTTGTATCAATGCCTTGTTCTGACTTTCTGATGACTTTCTATTGTTGGAGAGATTAGCTGAAGAAGAGTGGAAGGTAAAGCGTGAAGCTCTGCTACAGAATAGGGTATGCCACTTTCCTTACGGCTTTCTTTTCACCTTCCTCTGGATATCTCAGATTAAACACTGAATTAAAGCAAATCAAAGAAAGACTGTGACTTCAGACAGTTCCGAGTCATTAATCGATTCCCAGATGATGATCATCACAGTAATCAGTTCGGAATCAGAAACTTTTTGTTTAAACATGCACATATAGTGGAAGGTTACAGGCTACGTAATGCATCTCTTTTCCCTGTTAACAGACACTTGTTTTTCAATATTAATTTTCTATTACCACCTAAAAATGTAGGTTTGAGCAGTAATGAAATGCAGGGCAACTAGTGTTTGCTGAAAAGACATTAATCATCTATATTCACATGAGAAATCTATGTATGATCAAAATTAGTTCAGAATTCAGAAACATCTGCATGTCTGAGATCCTAGCTAAAATTGGAATTCAAGTCTGAATAACATGAGGTGAAATTACATCCACTGCTCAGAAAATAACCTAGGATAAGAGAAGAAGAGCAGTTTATCACAAAAAAGGGATAAGTGTGTAAGAAATAGTTAATGCTTAGCCCCAATTTCTGAGACACGACTATCCTAAGATAAAAGTATAGCAAAAGTCACCGAAAAGAGGTGCAACCTGCAAGACATTTTCAAAATAACAAAACATCTCCTTATCTTTGATTTTTTTGCAGGTAAGAAGTGTAGACGCAAAAGAAGCTCTGCGTCTGCAGAAGGAAAATAAGTTTGTGATTCTAGATGTACGGCCAGAGGCAGAGTTTAAAGAGGTAAGCCTGCTAACTTGATCACATTAAGCTAGTCTGAACTCTGAAACTCTAATAGCAACCTGGCACTAAGACAAAGGGGAACTTATGGATAGCTAAAACCGGCACAAATTAATTATTGAGTCTTAAAGTTTCGAATGTTGGGCAGGGGCACCCACCAGAAGCAATTAATGCGCAAATATATAGGCTTATAAAGGAATGGACTGCATGGGACATTGCCAGACGAGCTGCATTTGCATTTTTCGGTATCTTTTCTGGCACAGAAGAAAACCCTAATTTCATACAAGGTAATGTGCAGAATCCAGAATATCAGAATCACATAAGCAACTCCAAAACTAACTAAGCATTTACTTTACACTAACAGAGGTTGAATCAAAAATCAACAAAGATGCCAAGATTATAGTGGCCTGCTCAGCTGGGGGCACTATGAAACCCACCCAAAATCTTCCTGAAGGTCAACAATCAAGGTACATAAGCTATTTCTCAAAATATTTCCTCTTATTTCCTACATTTTATGCATTTAGTTGCATGACATGTTTGACAAACTTTCTGGCCTATGAAAACATAGGCATGTTGAACACACTACCATCATTTTTCTAGAACTTAATTCAACAGCAATCAAAATTTCCGTTCTTGTCTATAGCATAAATGTGGTCACTATCACAAATAGAAAATACCTGCCTACCATAACTCCTAGTATCTTTTCCTAGTAATCCTAGCTTCTACTCCATAATCTATGTTAGTTGCTAATTAACATCAGTAAAACTCTGCATCCAGGTCATTGATAGCAGCATACTTGCTTGTACTCAATGGATACAAGAACGTCTTCCATCTAGAGGGAGGACTTTACAGTTGGTCCAAAGAAGATCTGCCACTAGTTTCAGAAGAATAGTTTGCAGATAATCGATAACTCACGACTCTATGAGGAATTGAGGAGGTTAATTTTGTACGTGTGCTAGATATCGTTTGTGTATAGACAATGAGTTTTCCTTACATAGAGAGGAAGTTTATCTTCTCCACCACAACCCATGATTCCCTGTACAGTTGTCATTGAGAAACTTGCACCTCTGCAATGGTGAAAGTTGCCTACCACTAAATCTAATCAAATTTGGGAAGAGAATTTGTAATATGCTGTGCAAACTTAAAGAAATATCTTGGAAACTCAAAAATTATAAGTCTATGTTTGAATCAGGATCAACAAAGAACTAATCACATTAACATGAGTAAACAAATATCAGGATGATGTGAATTTTCATCATGGAGAAATGATTGAATCAAAAGAATTAAAAATATGATTCACTTCCTAAGTACTAACAAAAACTTTTGTTAAAAGAGATACCTCTTCCAAACAGTGTATACTTTGACCAATATGCATTTCAGAATCCAGAACCAATCTTGAAGGCTGGAAAGTGGAACGGCTTCCATCTGTCTCACATTCGTTGTAGAATTGAAATATAAACTCTGCTGATTGATGGAATCCACAGGAAACTTAGGATGAAGTAATCGTGCATACAGAAACTGACTGCATACCTCTGGACATCCTTAAGCTCTAAGTTGCATTATCTCTTCCCAATATAGGAAACATAACAAATATGTATAGTATTGCAGTAGTTACCCCCTCTTTTATACTTTCAAGGAAGCTCTTGCCATTTTAAGAGCACCCTGATAAGTCTGATTTCCACCAATAAAACCACTCATGTGTGCAAATACACAGCCAGGGATCCCTGCTATCTCTGATAGCTCTTTTCCCTCCAAACCCCTCCAATGTTGTGGCAAGGGTTTTCGGCTTTCAAATCTATCTGGTCCAACAGCCACTGCCTGCACTCGCCAAGAAGTTCGTCTATCATCCTGCATACAGTGAAAATGAGAATGTTAGCAAATTATCATAAGAGCATCTCCAACGGTAAGCTAATTTATAAATTGGCTTGTCAT AGTAGAGTGCATACTTCCATGTGTTCTTAGTACATAAGAATATAAATGATATAAATACAAAAGAAATGGGACGAATAAGGATGAGGATATATCCAATTAAGATTATAGCACCAACGGACCACCACAAAATCAGATTGTTCACTAACCAAAATATCTTCACCATGGCATCTTTTATGGTCCACCACTTTAAACAAAAACATTAATCCCATCTTCTGCAATCAAAGAACTGCAGTTTTCTAACCATAGTGTTCTAAATTTGAAGCATTGGATTTAAACAAAATGGCCACTTTCACTTCAATTACTCAACACCAGTCAATTTCGTCGTCATTGTACCAAAAATTTCATGAATCAACCCATATTTACTCCTCAAAATCTAGTCAGTCATCTTCTCTGATGGTCAGCTTAGGAAGAACTCCTGCAGGTAGTTTACACTATCGCGGCTCACCAGTGGGATTAAGCATCCGAAATGCAGCAACTAAACAAGCTAAATCTCCAGCTGAAGAAGAGTGGAAGGTAAAGCGTGAAGCTCTGCTACAGAATAGGGTAAGAAGTGTAGACGCAAAAGAAGCTCTGCGTCTGCAGAAGGAAAATAAGTTTGTGATTCTAGATGTACGGCCAGAGGCAGAGTTTAAAGAGGGGCACCCACCAGAAGCAATTAATGCGCAAATATATAGGCTTATAAAGGAATGGACTGCATGGGACATTGCCAGACGAGCTGCATTTGCATTTTTCGGTATCTTTTCTGGCACAGAAGAAAACCCTAATTTCATACAAGAGGTTGAATCAAAAATCAACAAAGATGCCAAGATTATAGTGGCCTGCTCAGCTGGGGGCACTATGAAACCCACCCAAAATCTTCCTGAAGGTCAACAATCAAGGTCATTGATAGCAGCATACTTGCTTGTACTCAATGGATACAAGAACGTCTTCCATCTAGAGGGAGGACTTTACAGTTGGTCCAAAGAAGATCTGCCACTAGTTTCAGAAGAATAGTTTGCAGATAATCGATAACTCACGACTCTATGAGGAATTGAGGAGGTTAATTTTGTACGTGTGCTAGATATCGTTTGTGTATAGACAATGAGTTTTCCTTACATAGAGAGGAAGTTTATCTTCTCCACCACAACCCATGATTCCCTGTACAGTTGTCATTGAGAAACTTGCACCTCTGCAATGGTGAAAGTTGCCTACCACTAAATCTAATCAAATTTGGGAAGAGAATTTGTAATATGCTGTGCAAACTTAAAGAAATATCTTGGAAACTCAAAAATTATAAGTCTATGTTTGAATCAGGATCAACAAAGAACTAATCACATTAACATGAGTAAACAAATATCAGGATGATGTGAATTTTCATCATGGAGAAATGATTGAATCAAAAGAATTAAAAATATGATTCACTTCCTAAGTACTAACAAAAACTTTTGTTAAAAGAGATACCTCTTCCAAACAGTGTATACTTTGACCAATATGCATTTCAGAATCCAGAACCAATCTTGAAGGCTGGAAAGTGGAACGGCTTCCATCTGTCTCACATTCGTTGTAGAATTGAAATATAAACTCTGCTGATTGATGGAATCCACAGGAAACTTAGGATGAAGTAATCGTGCATACAGAAACTGACTGCATACCTCTGGACATCCTTAAGCTCTAAGTTGCATTATCTCTTCCCAATATAGGAAACATAACAAATATGTATAGTATTGCAGTAGTTACCCCCTCTTTTATACTTTCAAGGAAGCTCTTGCCATTTTAAGAGCACCCTGATAAGTCTGATTTCCACCAATAAAACCACTCATGTGTGCAAATACACAGCCAGGGATCCCTGCTATCTCTGATAGCTCTTTTCCCTCCAAACCCCTCCAATGTTGTGGCAAGGGTTTTCGGCTTTCAAATCTATCTGGTCCAACAGCCACTGCCTGCACTCGCCAAGAAGTTCGTCTATCATCCTGCATACAGTGAAAATGAGAATGTTAGCAAATTATCATAAGAGCATCTCCAACGGTAAGCTAATTTATAAATTGGCTTGTCAT ATGGCCACTTTCACTTCAATTACTCAACACCAGTCAATTTCGTCGTCATTGTACCAAAAATTTCATGAATCAACCCATATTTACTCCTCAAAATCTAGTCAGTCATCTTCTCTGATGGTCAGCTTAGGAAGAACTCCTGCAGGTAGTTTACACTATCGCGGCTCACCAGTGGGATTAAGCATCCGAAATGCAGCAACTAAACAAGCTAAATCTCCAGCTGAAGAAGAGTGGAAGGTAAAGCGTGAAGCTCTGCTACAGAATAGGGTAAGAAGTGTAGACGCAAAAGAAGCTCTGCGTCTGCAGAAGGAAAATAAGTTTGTGATTCTAGATGTACGGCCAGAGGCAGAGTTTAAAGAGGGGCACCCACCAGAAGCAATTAATGCGCAAATATATAGGCTTATAAAGGAATGGACTGCATGGGACATTGCCAGACGAGCTGCATTTGCATTTTTCGGTATCTTTTCTGGCACAGAAGAAAACCCTAATTTCATACAAGAGGTTGAATCAAAAATCAACAAAGATGCCAAGATTATAGTGGCCTGCTCAGCTGGGGGCACTATGAAACCCACCCAAAATCTTCCTGAAGGTCAACAATCAAGGTCATTGATAGCAGCATACTTGCTTGTACTCAATGGATACAAGAACGTCTTCCATCTAGAGGGAGGACTTTACAGTTGGTCCAAAGAAGATCTGCCACTAGTTTCAGAAGAATAG MATFTSITQHQSISSSLYQKFHESTHIYSSKSSQSSSLMVSLGRTPAGSLHYRGSPVGLSIRNAATKQAKSPAEEEWKVKREALLQNRVRSVDAKEALRLQKENKFVILDVRPEAEFKEGHPPEAINAQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPNFIQEVESKINKDAKIIVACSAGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEGGLYSWSKEDLPLVSEE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02601.1 vs. NCBI nr
Match: gi|902224190|gb|KNA19710.1| (hypothetical protein SOVF_058950 [Spinacia oleracea]) HSP 1 Score: 463.4 bits (1191), Expect = 2.400e-127 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Spo02601.1 vs. NCBI nr
Match: gi|731321515|ref|XP_010671393.1| (PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 422.9 bits (1086), Expect = 3.600e-115 Identity = 213/237 (89.87%), Postives = 223/237 (94.09%), Query Frame = 1
BLAST of Spo02601.1 vs. NCBI nr
Match: gi|118489060|gb|ABK96337.1| (unknown [Populus trichocarpa x Populus deltoides]) HSP 1 Score: 330.9 bits (847), Expect = 1.900e-87 Identity = 176/240 (73.33%), Postives = 193/240 (80.42%), Query Frame = 1
BLAST of Spo02601.1 vs. NCBI nr
Match: gi|566196466|ref|XP_002317802.2| (rhodanese-like domain-containing family protein [Populus trichocarpa]) HSP 1 Score: 329.7 bits (844), Expect = 4.200e-87 Identity = 175/240 (72.92%), Postives = 193/240 (80.42%), Query Frame = 1
BLAST of Spo02601.1 vs. NCBI nr
Match: gi|743900760|ref|XP_011043685.1| (PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Populus euphratica]) HSP 1 Score: 328.2 bits (840), Expect = 1.200e-86 Identity = 174/240 (72.50%), Postives = 192/240 (80.00%), Query Frame = 1
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJP8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058950 PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 1.700e-127 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051430 PE=4 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 2.500e-115 Identity = 213/237 (89.87%), Postives = 223/237 (94.09%), Query Frame = 1
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Match: T1E126_SILLA (Rhodanese-like domain-containing protein OS=Silene latifolia GN=RHOD PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 2.900e-95 Identity = 183/237 (77.22%), Postives = 203/237 (85.65%), Query Frame = 1
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Match: A9PIY4_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 1.300e-87 Identity = 176/240 (73.33%), Postives = 193/240 (80.42%), Query Frame = 1
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Match: B9I210_POPTR (Rhodanese-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0012s02760g PE=4 SV=2) HSP 1 Score: 329.7 bits (844), Expect = 2.900e-87 Identity = 175/240 (72.92%), Postives = 193/240 (80.42%), Query Frame = 1
BLAST of Spo02601.1 vs. ExPASy Swiss-Prot
Match: STR14_ARATH (Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.200e-73 Identity = 153/238 (64.29%), Postives = 180/238 (75.63%), Query Frame = 1
BLAST of Spo02601.1 vs. ExPASy Swiss-Prot
Match: STR11_ARATH (Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.600e-6 Identity = 61/221 (27.60%), Postives = 102/221 (46.15%), Query Frame = 1
BLAST of Spo02601.1 vs. ExPASy Swiss-Prot
Match: STR9_ARATH (Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.600e-6 Identity = 38/150 (25.33%), Postives = 72/150 (48.00%), Query Frame = 1
BLAST of Spo02601.1 vs. TAIR (Arabidopsis)
Match: AT4G27700.1 (Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 277.7 bits (709), Expect = 6.600e-75 Identity = 153/238 (64.29%), Postives = 180/238 (75.63%), Query Frame = 1
BLAST of Spo02601.1 vs. TAIR (Arabidopsis)
Match: AT4G24750.1 (Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 53.5 bits (127), Expect = 2.000e-7 Identity = 61/221 (27.60%), Postives = 102/221 (46.15%), Query Frame = 1
BLAST of Spo02601.1 vs. TAIR (Arabidopsis)
Match: AT2G42220.1 (Rhodanese/Cell cycle control phosphatase superfamily protein) HSP 1 Score: 53.5 bits (127), Expect = 2.000e-7 Identity = 38/150 (25.33%), Postives = 72/150 (48.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02601.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02601.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02601.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo02601.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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