Spo02609 (gene)

Overview
NameSpo02609
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionT30E16.24
Locationchr3 : 6416534 .. 6418673 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAAGGATTTAATCATATAAAAGGTAATAATTTGTAAAACTAATACAATGAGATATACATGATAAAACAATTAGCCATAACCACACCGTATACACCCCCAAGAAGACCCTTTAGAAAACCAAGGTTTATGCACAATTAGACAAGAGAAGTTATCCTAAGAACAAAGTGAGAAAATAAGAACTTGGAGGTTTTATTTGAATAGAATCATAATGGTCTAACATATGGTACATAAGCGGGATTCTAGATAGGAAAAATTTTAAGAAGTTATCACTAATTTTTCGGTCAAACTTAATTGAAAAAATGGGTGAAAAAAGCAGGAAGAAACTAGTGATTTAGGCTTTGTTTGGTAAGGTGTCAAACGTTTTCATGGAAAACGATCTTCCCCTTTCCAATCATTTTACGTTGTTTGGTTTGGCAAGGGATAGAAAACAATTTTCCATAACTTTCTCAAAGGTGAAAAAACCTTTTCCATTTGAAAGGGAGGGAAACCACTTTTCCACCTTACCTCCCTCTCCCTTCTTGGCTTTTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCTTTTAAGGAACCAAACAAAGGAAAACTAGTTTGGAATTGTGTTTTTCCTTGGAAAATGTTTTCCATGAAAATATTTTACACCAAAAACATTTTACACCAAGCCAAACGAAGCCTTACAGAAAGAGCCCTTGGCCAAGAAAGAAAACTTTAGCATTGCCATCTGTCACTGAAATTGCCTAATGCCAAATGTAAAGTTGAAACCATCAAAAGAAAACTTTAGCATTGGCTATTTGTCACTGAAATTTTGTCACCTAAAATGGTATACATATGTGATACCTCCATGAACTTCTCGAAACGAAAGTGTGTGAACTACCACTCCCAACACAATTCTTTCCTCCTTTAATGAGATTTAAATCTGGCAACCCCCTATTCCGAATCCCAATTCCTTATTTCCCATACATAAAATCCATTTAACTCCCTTAATCAGGTCAACCAATAAAAGCTCATTCTATCTGCTACACCTTAGGTCTTACAAATATTTGTGCTTTATAGCAACATATACTACCATACTTCACTGCCTACTCCAGAAGCTGCAAATCAGAATAGTTAAAGAAGAACCGGAAAATTGACCCTTATCTACAGAACAATTATAATTTCTACTGACTCGATGCAACAAACCTTGTATCTACTGTAATAATTTCTACAATCACAAATACTGAATAACTATAGAAAAAGCTTCACCATCAGTTCAAACGGGAAGGGAGCAATGGACAAACCTTTATCACCACGCTGGTAATCCTCCCATCTCAGCTCTTCATGACTTTTGTCTTTGTAAGCTGCCATAGCAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGGTGTGTAATTAGCAACTCTACTTCCTCCCAAATTTGACTGCCCAAAGCCGCCGCCAAAAGTATTGGAACTTGACGCTCCTACATACAAGGAAGCCAAATCATGAATACAGAAGCCATATAGTTAACCAATTATAGCTATACATGTTTAATATGAAATGATTTATATGTCCAAACAATCAAAATTTACCAAATGGAGAAGTTGAGGCACCAAAAGTAGATGGTGTAGACCCAAAACCGGTGCTTCCAAAAGTAGATGTAGTTTGACCAAAGGATGGGCTAGAGCCAAAATTAAAAGATGGAGAACTAGAATTTGCTACATTGAATGACGGAGTGCTAGTAGCCCCAAAACCTGGAGTGCTATTAGTAGCTCCAAAGGTTGGAGTGGTAGCAGCACCAAACGCTTGAGTGGTCGGGGTGCCAAATGCAGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

mRNA sequence

ATGGCCCAAGGATTTAATCATATAAAAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

Coding sequence (CDS)

ATGGCCCAAGGATTTAATCATATAAAAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

Protein sequence

MAQGFNHIKDIDSNFPAWLPEPASASKVEVPPAPKTGVLEDPNAPPDPKEGELDTPKAAPVLPKAEVGVEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEEAPNALLPNAGCDC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02609.1Spo02609.1mRNA


Homology
[Close]
BLAST of Spo02609.1 vs. NCBI nr
Match: gi|8778762|gb|AAF79770.1|AC009317_29 (T30E16.24 [Arabidopsis thaliana])

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-11
Identity = 56/141 (39.72%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 25  ASKVEVPPAPKTGVLEDPNAPPD------------PKEGELDTPKAAPV---------LP 84
           A K EV  AP  GVL++P APP+            PK G  D P A  +          P
Sbjct: 68  APKAEVLDAPNVGVLDEPKAPPELKVLLPNALPELPKAGAGDAPNAGELEEPNKGVLEAP 127

Query: 85  KAEVGVEPKVGALGAPKVGAL----------------VAPNVDVVDDPKAEELVPPNAGW 129
           KA V VEPK G L AP  G L                VAPN +V + PKA  L  P AG 
Sbjct: 128 KAGVFVEPKAGVLDAPNPGVLLPPNPVVFVAPNPGVFVAPNPEVFETPKAGVLEAPKAGV 187
[Close]
BLAST of Spo02609.1 vs. NCBI nr
Match: gi|976880129|gb|KVH69805.1| (hypothetical protein Ccrd_025604 [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.9 bits (167), Expect = 7.100e-9
Identity = 49/101 (48.51%), Postives = 55/101 (54.46%), Query Frame = 1 

		  

Query: 21  EPASASKVEVP-----PAPKTGVLEDPNAPP-DPKEGELDTPKAAPVLPKAEVGVEPKVG 80
           E  +A  +E P      AP  GVLE P A   DPK GEL+TP A PVLP A V V+PK G
Sbjct: 36  EDPNAGVLEAPNAGVLEAPNAGVLEAPKAGVLDPKTGELETPNAEPVLPNAGVDVQPKAG 95

Query: 81  ALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEE 116
            L AP  G LVAP   V+  PKA  L  PN G      G+E
Sbjct: 96  VLVAPNAGVLVAPKAGVLVAPKAGVLEDPNIGLRSYLIGDE 136
[Close]
BLAST of Spo02609.1 vs. NCBI nr
Match: gi|297837575|ref|XP_002886669.1| (hypothetical protein ARALYDRAFT_315354 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 65.9 bits (159), Expect = 6.000e-8
Identity = 51/128 (39.84%), Postives = 62/128 (48.44%), Query Frame = 1 

		  

Query: 20  PEPASASKVEVPPAPKTGVLEDPNAPP--DPKEGELDTPKAAPVL-PKAEVG-------- 79
           PE  +     +P  PK G  + PNA    +P EG +  PKA  +L PKA+V         
Sbjct: 84  PELKALLPNALPELPKAGAGDTPNAGELEEPNEGVVAAPKAGVLLEPKADVLDAPNPGVL 143

Query: 80  VEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNA--------GWLDAPNGEEAPNAL 129
           V P  G L AP  G LVAPN +V + P AE    PNA        G L+ P G + P  L
Sbjct: 144 VAPNPGVLVAPNPGVLVAPNAEVFEAPNAEVFEAPNAEVFEAPKAGVLEVPKGVDEPKVL 203
[Close]
BLAST of Spo02609.1 vs. NCBI nr
Match: gi|168040971|ref|XP_001772966.1| (predicted protein [Physcomitrella patens])

HSP 1 Score: 60.1 bits (144), Expect = 3.300e-6
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1 

		  

Query: 20  PEPASASKVEVP-----PAPKTGVLEDPNAPPDPKEGELDTPKAAPV-LPKAEVGVEPKV 79
           P+P     ++ P      AP  GVLE PNA      G L+ P A  +  P A V   P  
Sbjct: 21  PKPDVLGALDTPNAGVLEAPNAGVLEAPNA------GVLEAPNAGVLEAPNAGVLEAPNA 80

Query: 80  GALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGE--EAPNALL---PNAG 126
           G L AP  G L APN  V++ P A  L  PNAG L+APN    EAPNA +   PNAG
Sbjct: 81  GVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 131
[Close]
BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: Q9LQ49_ARATH (T30E16.24 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.400e-11
Identity = 56/141 (39.72%), Postives = 65/141 (46.10%), Query Frame = 1 

		  

Query: 25  ASKVEVPPAPKTGVLEDPNAPPD------------PKEGELDTPKAAPV---------LP 84
           A K EV  AP  GVL++P APP+            PK G  D P A  +          P
Sbjct: 68  APKAEVLDAPNVGVLDEPKAPPELKVLLPNALPELPKAGAGDAPNAGELEEPNKGVLEAP 127

Query: 85  KAEVGVEPKVGALGAPKVGAL----------------VAPNVDVVDDPKAEELVPPNAGW 129
           KA V VEPK G L AP  G L                VAPN +V + PKA  L  P AG 
Sbjct: 128 KAGVFVEPKAGVLDAPNPGVLLPPNPVVFVAPNPGVFVAPNPEVFETPKAGVLEAPKAGV 187
[Close]
BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: A0A118JFJ2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025604 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.000e-9
Identity = 49/101 (48.51%), Postives = 55/101 (54.46%), Query Frame = 1 

		  

Query: 21  EPASASKVEVP-----PAPKTGVLEDPNAPP-DPKEGELDTPKAAPVLPKAEVGVEPKVG 80
           E  +A  +E P      AP  GVLE P A   DPK GEL+TP A PVLP A V V+PK G
Sbjct: 36  EDPNAGVLEAPNAGVLEAPNAGVLEAPKAGVLDPKTGELETPNAEPVLPNAGVDVQPKAG 95

Query: 81  ALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEE 116
            L AP  G LVAP   V+  PKA  L  PN G      G+E
Sbjct: 96  VLVAPNAGVLVAPKAGVLVAPKAGVLEDPNIGLRSYLIGDE 136
[Close]
BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: D7KXT7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_315354 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.200e-8
Identity = 51/128 (39.84%), Postives = 62/128 (48.44%), Query Frame = 1 

		  

Query: 20  PEPASASKVEVPPAPKTGVLEDPNAPP--DPKEGELDTPKAAPVL-PKAEVG-------- 79
           PE  +     +P  PK G  + PNA    +P EG +  PKA  +L PKA+V         
Sbjct: 84  PELKALLPNALPELPKAGAGDTPNAGELEEPNEGVVAAPKAGVLLEPKADVLDAPNPGVL 143

Query: 80  VEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNA--------GWLDAPNGEEAPNAL 129
           V P  G L AP  G LVAPN +V + P AE    PNA        G L+ P G + P  L
Sbjct: 144 VAPNPGVLVAPNPGVLVAPNAEVFEAPNAEVFEAPNAEVFEAPKAGVLEVPKGVDEPKVL 203
[Close]
BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: A9T316_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18212 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-6
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1 

		  

Query: 20  PEPASASKVEVP-----PAPKTGVLEDPNAPPDPKEGELDTPKAAPV-LPKAEVGVEPKV 79
           P+P     ++ P      AP  GVLE PNA      G L+ P A  +  P A V   P  
Sbjct: 21  PKPDVLGALDTPNAGVLEAPNAGVLEAPNA------GVLEAPNAGVLEAPNAGVLEAPNA 80

Query: 80  GALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGE--EAPNALL---PNAG 126
           G L AP  G L APN  V++ P A  L  PNAG L+APN    EAPNA +   PNAG
Sbjct: 81  GVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 131
The following BLAST results are available for this feature:
BLAST of Spo02609.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|8778762|gb|AAF79770.1|AC009317_293.4e-1139.7T30E16.24 [Arabidopsis thalian... [more]
gi|976880129|gb|KVH69805.1|7.1e-948.5hypothetical protein Ccrd_0256... [more]
gi|297837575|ref|XP_002886669.1|6.0e-839.8hypothetical protein ARALYDRAF... [more]
gi|168040971|ref|XP_001772966.1|3.3e-642.7predicted protein [Physcomitre... [more]
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BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
Q9LQ49_ARATH2.4e-1139.7T30E16.24 OS=Arabidopsis thali... [more]
A0A118JFJ2_CYNCS5.0e-948.5Uncharacterized protein OS=Cyn... [more]
D7KXT7_ARALL4.2e-839.8Putative uncharacterized prote... [more]
A9T316_PHYPA2.3e-642.7Predicted protein (Fragment) O... [more]
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BLAST of Spo02609.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02609.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009987 cellular process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0009395 phospholipid catabolic process
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0070290 N-acylphosphatidylethanolamine-specific phospholipase D activity
molecular_function GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
molecular_function GO:0004630 phospholipase D activity
molecular_function GO:0050692 DBD domain binding
molecular_function GO:0008289 lipid binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003723 RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo044090.83Barchart | Table
Spo163780.83Barchart | Table
Spo004440.82Barchart | Table
Spo253460.82Barchart | Table
Spo011280.82Barchart | Table
Spo255070.82Barchart | Table
Spo098550.81Barchart | Table
Spo120840.80Barchart | Table
Spo021050.80Barchart | Table
Spo102110.80Barchart | Table
Spo022080.80Barchart | Table
Spo210770.80Barchart | Table
Spo267260.80Barchart | Table
Spo068730.79Barchart | Table
Spo041140.79Barchart | Table
Spo159940.78Barchart | Table
Spo134870.78Barchart | Table
Spo127600.78Barchart | Table
Spo240640.77Barchart | Table
Spo168940.77Barchart | Table
Spo216650.77Barchart | Table
Spo017440.77Barchart | Table
Spo262720.77Barchart | Table
Spo257790.77Barchart | Table
Spo256610.77Barchart | Table
Spo129180.77Barchart | Table
Spo030080.76Barchart | Table
Spo024690.76Barchart | Table
Spo064970.76Barchart | Table
Spo249370.76Barchart | Table
Spo249360.76Barchart | Table
Spo062770.75Barchart | Table
Spo137890.75Barchart | Table
Spo202350.75Barchart | Table
Spo225050.75Barchart | Table
Spo024700.75Barchart | Table
Spo242250.74Barchart | Table
Spo193940.74Barchart | Table
Spo170390.74Barchart | Table
Spo069290.74Barchart | Table
Spo256220.73Barchart | Table
Spo009080.73Barchart | Table
Spo050900.73Barchart | Table
Spo143780.73Barchart | Table
Spo241900.72Barchart | Table
Spo097110.72Barchart | Table
Spo235990.72Barchart | Table
Spo142670.72Barchart | Table
Spo273140.72Barchart | Table
Spo249160.71Barchart | Table
Spo015390.71Barchart | Table
Spo050520.71Barchart | Table
Spo230920.71Barchart | Table
Spo151600.71Barchart | Table
Spo083800.70Barchart | Table
Spo247750.70Barchart | Table
Spo099980.70Barchart | Table
Spo221390.70Barchart | Table
Spo191780.70Barchart | Table
Spo063800.70Barchart | Table
Spo094950.70Barchart | Table
Spo039040.69Barchart | Table
Spo014780.69Barchart | Table
Spo240010.69Barchart | Table
Spo016960.69Barchart | Table
Spo182210.69Barchart | Table
Spo201540.69Barchart | Table
Spo051840.69Barchart | Table
Spo079160.69Barchart | Table
Spo234960.69Barchart | Table
Spo145130.69Barchart | Table
Spo229390.69Barchart | Table
Spo084890.69Barchart | Table
Spo129190.68Barchart | Table
Spo014030.68Barchart | Table
Spo029930.68Barchart | Table
Spo054720.68Barchart | Table
Spo067110.68Barchart | Table
Spo104500.68Barchart | Table
Spo126990.68Barchart | Table
Spo128080.68Barchart | Table
Spo138770.68Barchart | Table
Spo192900.68Barchart | Table
Spo203090.68Barchart | Table
Spo159040.67Barchart | Table
Spo195320.67Barchart | Table
Spo261080.67Barchart | Table
Spo075930.67Barchart | Table
Spo196160.67Barchart | Table
Spo074480.67Barchart | Table
Spo051870.67Barchart | Table
Spo251000.67Barchart | Table
Spo058400.67Barchart | Table
Spo027260.67Barchart | Table
Spo237350.67Barchart | Table
Spo264280.67Barchart | Table
Spo116430.67Barchart | Table
Spo102530.67Barchart | Table
Spo079690.66Barchart | Table
Spo218180.66Barchart | Table
Spo222150.66Barchart | Table
Spo229360.66Barchart | Table
Spo147110.66Barchart | Table
Spo139360.66Barchart | Table
Spo093070.66Barchart | Table
Spo242130.66Barchart | Table
Spo075450.66Barchart | Table
Spo058350.66Barchart | Table
Spo054150.66Barchart | Table
Spo049520.66Barchart | Table
Spo035730.66Barchart | Table
Spo209040.65Barchart | Table
Spo058830.65Barchart | Table
Spo004180.65Barchart | Table
Spo239660.65Barchart | Table
Spo065510.65Barchart | Table