Spo02643 (gene) | SpinachBase

Overview


Name	Spo02643
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 27849026 .. 27852755 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGTTCATGTTGTAGATTCAAAGAATTTCTTTCTATTGAAGAATCAGGCTTCTTTAAGTTTGTACACCTAGCCGATGGTCCCACCCTTAAAGCCTAGGTATTAGCTATTAAGGCTTTCCTGATCAATCAATTGCACTTGATGTCATTTTACAGGCTTCTTATGTAATTTCACAGAAACAGGTATTGATGGGGTGTAATGGAGTCATTTCAGTGGTGGCAAAGTGGCTCGCATTCAAGAAACCATCATTGACAAGAAGATCGGCTATAAGGGGTAGTGCATACTACAACTTTTTTTCAATGAATGCATGATCATCATACTTTAAAGGCTAAGTGTACACTTATGTAACAATAGCTTATTTTACCTAATTTCCTAATCTAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTACAAGAGGTTGAAGGAAAGTCCATCAGATTTTGGTTAACTCTCTGCTGGGAATTTATTATGTGCTGACGCAAGTTACTCCTGCTTCTTTCAAGAACAGCAATCTTAATCATCAAATTTATAATAACAATAATCACAGTATTAATAATCTTTCTAGGTTTCCTTGTACTAATTTTAGAAGCAATTATATATATTCTTGAAAATAAAGTAGACGTTGCTTAGTATTCCACTACTATTATTTTACATTTGTAGGTAGTATCAATGAATTCATATATTATTCAAAGTTAGTTTGCAATCATATTGTCCTAACCTAATTTCCTATATTAATTAGGGTCGGGATTTGCTTTGCGTTTATGTAATTATTTTCCTATAACTTGGGGGACTGTGCGCGATAGCGCACAGGCCAACAACTAGTTTATTAAACATAGGAAGTTTTATTTTTGATGAATGGATCGATATCATGGTAGGTTTGAACAAAATGAATATTAAGGTAGTTCTTTTCAAAAGTCAATATATAGATAGATATATCTGGGTTTATACCTTGTAAAATCGAAATCTCGCCTTCAGGCCCCCACTGCCCGACCACTCGAGCATGTTAGGGGGAGATAAGCCACAACATGTGCCTCAGCTAGCAATGCAAAAGGGGTTGCGTTTCTCACAAAATTTTGACCTTGAACTCTAAATACCCCCTTAATGTTTAGTTGTTTATCAACTAAGATAAGCACTTGACTCATTAGTTGATATACCTTAGTTGAGCTTAAAGATGATTGTGAGTCGTGTTGGACCGTTTGTTGTGAGCCTGCATGCTATGGTCCTGACACAAATCAAGCTCACTTGTTTTCGTGTTGGGCCGAAAATTTCAAAAGGGTTTCCCAATCTCACATGCCCTCGTGTCTTGTCGTTCTTCGTGTCTGAGCTAATTTCACTCAATTTAACGTGATTTGTTGTACTCCATCCGTATTTTTTTAGGAGTCACGTGTTGATTGGAACAAGTATTAAGGATGTATAGTTAAATTTAAAATAATAATGATACAAGTGGGGTAGTTGACAATAAAGAAATATAAAAAAACAAGTGGGATGTAAAGTTTACCAAAAATGAAATTATTAATGATTAAAATGGGCTAATAAAAAAATTAAAATAATAATAAGCAATTGGAAAGTAGGTGTGAAAGTTAACAAAAATGAAATTATGACTCCTACAAAAATACGACTGGAAGTAATATTTGTGACTCCTAAAAAAACACAATGGGAGTATTAAACTTTACGGTGACTTTTGTTATTGTGCTTTTTCGGGAAAAAAATGCGCCACAAACCCATCACACTCCACCCCTACAATTTGATACAAATTTGTAGACCGCCTAACGGTTAGACCAATTTGTTGTCACCTAATAAAATTGATTAGTTAAGCATTGAACCAATTAGTTAAATAATGAAATTGATTAGTTAAGCAATGAGATCAATTAGTTAAGATTTTATGAGTTTTAGTTAATAATAAGTTTGTTCAAAAATAATATCTATTCGACTCATAAATTTAACTATTTGTTTTTATACCTTAACTATTTTGTTATTCAATTTAGTTATGATTTTATTACTTTTAGTTATGTTTTACACTTATTTAGTTAGTACCAAAAAAAAATGGTATAACCATTAGGCGATTTTACACAAAAGCTTTTGACAATTTATACCTGCGTTAGCCGTGTTTTTTTCCGTGCCCGTACCATATTGTGCTTTTTTCGGGCTGAGATGGGGCAGAGCCTCGCCCCGGACTGGGCCCAGTGCCATTTTTAGCTCAACTGACGTTTATTTTTCCTGTTGGCTGTTGCTAATTATGGCGAAGAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGGTAATCCCTCTTCTCCTTCATTATACTATGTTTTTCTCTCTCTAAACACGACGATGGAAACCCTAATTTGTAACTCGTCTTGATTGTTTATATCCACATTCATTAGTATTTTACTTTTAATTGATTTTAGGGTTGCTGTCAATGTGTGTGAATTTGAAATTCAGTTCGAACCCTAAAATTGAATTTGACAAGATTTAATTACGAATAAAAATAAATAATTCAGTTATGTTGCAGTGAATTGGAATTATTTTGGTCTGTTCAAATTGATTGAATTCAAAGATTACTTCTTTTTCAGTCTGATAAGATTAACTTTTGATTTCATTGTCTATTGTTCGAGAAAATTATTGATGGTAGTGTATAGTCCTTCAATGTATGATTGCATTGGAGATGGGGTACGATAACCCTGCCTTATTCTGTTGGTAAATCCCTAAAGTGGAGGACTGTGAGTTCCCAATGCCCAGCAAGACCAGCAGATACTCCTTAGGCCGCTGCTTTGAATCCAGAATATTTTGTTTTACCTTGTATATTTCTGCTCATTTGATAAATTATGTGCGTTATCCAACTTTATCAAATGAGGCAATGAGCAAAAAAGAACACTTCAGGTGCACCTAGCTGCTGGTGAATTAAGAATTTTCACATATTTATACCGTTCTTTGTTGTGAAGTTGTCTTGAGTGAAGTCCTTTTATTTCTTGATCAGGGACCGAGTGCATTCCCTATTCCCTAGGAGGCTAGGACTTCTGTTTGGAAACAGCATGCCATTTTGTGAATATAGTTTTCTGAAACAGTTACCGTATCTAATCTGACTGAGAGAATGAGATAGGGATATGAAGTACTTCATATTATTTTGAGTTTTGGGGGTTGATATGCAGGCATGCTTCCCTAATTACTGTTCTATAAGAGTCCTAGTTTGATACATGAAAAATGAAATTAAGTATGTTGTCATATCCTAGATTGAATTTATTAACAGGGTATGGTTACATCTATTTAAATGGGAACAAATTAAAGCTCAGTTGATAGAGCCTAGAACTCTAGTTTGGTTAAAACAGATGATCCTTCAATCGCTGGATCGAATCCAGCACTTCAATATTATTATTATTTTTTTTGCTTTTCCAGTTTTTACTTAATTTAAAGCATGAATTTTTCCTTCTAGATATGATAACATGGATTTTTCTATAATCGGTACTTCAGTTATCAAAGTTATGATAGTTTTTGTTTTTGTGATAGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

mRNA sequence

ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

Coding sequence (CDS)

ATGGTGGCTTCTGTTGCCACATCTGTTGAGATAGATTTTCTTTTGTTGTTCTGCAACTCAGTCTCGCAGTGCCATAGGCTTAGACCTCAGGACATACACCAGGGTCACATTCTTGCAGGCTCAAGGTTTAGGGAGGGAGGATTGAAGAAGACCGTATCTCCAATTTCTGCCAGAGTCCATGAAGCCTCTGTGAGGGGATCCAGGAGAAGGCTTCTGAAGGGTAAAATCAGTAATCACTTGTACTGTGAAATATCAGCCAAAAGAGTTAAGGCAAAGAGATTTTGA

Protein sequence

MVASVATSVEIDFLLLFCNSVSQCHRLRPQDIHQGHILAGSRFREGGLKKTVSPISARVHEASVRGSRRRLLKGKISNHLYCEISAKRVKAKRF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02643.1	Spo02643.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo02643.1 vs. NCBI nr
BLAST of Spo02643.1 vs. UniProtKB/TrEMBL
BLAST of Spo02643.1 vs. ExPASy Swiss-Prot
BLAST of Spo02643.1 vs. TAIR (Arabidopsis)

BLAST of Spo02643.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02643.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02643.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02643.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0016049	cell growth
biological_process	GO:0007033	vacuole organization
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0000902	cell morphogenesis
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004853	uroporphyrinogen decarboxylase activity
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo27081	0.77	Barchart \| Table
Spo20544	0.75	Barchart \| Table
Spo13029	0.74	Barchart \| Table
Spo19850	0.73	Barchart \| Table
Spo14342	0.73	Barchart \| Table
Spo09290	0.72	Barchart \| Table
Spo01261	0.72	Barchart \| Table
Spo26168	0.71	Barchart \| Table
Spo12107	0.71	Barchart \| Table
Spo06679	0.71	Barchart \| Table
Spo11509	0.71	Barchart \| Table
Spo01579	0.70	Barchart \| Table
Spo19874	0.70	Barchart \| Table
Spo10316	0.70	Barchart \| Table
Spo27102	0.70	Barchart \| Table
Spo06949	0.70	Barchart \| Table
Spo03736	0.70	Barchart \| Table
Spo16652	0.69	Barchart \| Table
Spo17329	0.69	Barchart \| Table
Spo00283	0.69	Barchart \| Table
Spo24857	0.68	Barchart \| Table
Spo03654	0.68	Barchart \| Table
Spo20071	0.68	Barchart \| Table
Spo05093	0.68	Barchart \| Table
Spo26811	0.68	Barchart \| Table
Spo11520	0.68	Barchart \| Table
Spo12894	0.68	Barchart \| Table
Spo13482	0.68	Barchart \| Table
Spo13518	0.68	Barchart \| Table
Spo13941	0.68	Barchart \| Table
Spo13956	0.68	Barchart \| Table
Spo02068	0.68	Barchart \| Table
Spo23588	0.67	Barchart \| Table
Spo21691	0.67	Barchart \| Table
Spo21768	0.67	Barchart \| Table
Spo10861	0.67	Barchart \| Table
Spo20686	0.67	Barchart \| Table
Spo17371	0.67	Barchart \| Table
Spo00344	0.67	Barchart \| Table
Spo19245	0.67	Barchart \| Table
Spo27374	0.66	Barchart \| Table
Spo01840	0.66	Barchart \| Table
Spo02513	0.66	Barchart \| Table
Spo09752	0.66	Barchart \| Table
Spo11918	0.66	Barchart \| Table
Spo13202	0.66	Barchart \| Table
Spo14096	0.66	Barchart \| Table
Spo17959	0.66	Barchart \| Table
Spo19788	0.66	Barchart \| Table
Spo20600	0.66	Barchart \| Table
Spo21067	0.66	Barchart \| Table
Spo22760	0.66	Barchart \| Table
Spo25330	0.66	Barchart \| Table
Spo00225	0.66	Barchart \| Table
Spo19599	0.65	Barchart \| Table
Spo06919	0.65	Barchart \| Table
Spo13214	0.65	Barchart \| Table
Spo09993	0.65	Barchart \| Table
Spo20952	0.65	Barchart \| Table
Spo09499	0.65	Barchart \| Table
Spo19751	0.65	Barchart \| Table