Spo02647 (gene) | SpinachBase

Overview


Name	Spo02647
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Calcium-binding EF-hand family protein isoform 1
Location	SpoScf_01265 : 34386 .. 39498 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTTCTATAACAGAGTTCAAAGCTGTTACAAAGGAAATATGTAAGCTGCCATCCTTCTTCTCTATCGTCCTTTTCCAAAAGATTGATGTCAACGGTACAGAATTTGTCACCAGGTATACAACTTAATGATGGCAACGTTGCTGGAAATTGAAATTTATTCCTGTTTACTTTGCATGCTTTATACTTGTCATATAACATGTAATCCAATGCATCTGCAGTGTTGCGTTGATGAGGCTAGCTGAGATGGACTACTGTGGGACTACCAGGTAACAACCTTATTTAATATGTTTCTATATAGGGTTTTTGATGCTTTCATTGTGTGTAGTAGGTAAACATGAATTTGAAATTTTTTGTGCTGCATAATTTCCGAACTTTGGTAGGTGAGTCCTATTCTTTGGAAAAACTTTGGTGCTTCATAAGTAAATGTAATAAAATCAGCAGGCCTTAGTATCAGATTCTTTGATAACAATGTTGTTGAGATTTCTGCTGGAGGAATAACAGCACAGAAGAATGTTTTTTCTGTAGATGTTAGTGCAGGTTGCTTATCTGCATGAAAGAAAATTAACTGCAATGTATGCTTCTGTTTGTTTGAAGTTTGAATTGACTAGGGGCCTTATCATTTTTGCATTTATGTAAAGAAGGTCATGGATCTAAATTCCTTATAAGGAAACTATACTTATTTCCTCTTTTGCTTCTCACACATTGATTAAGGTGACCTCAGCCCACAAAAAGGTAGAAATTCATTGGACTTGTGAAATTGTCTAACATAAACATTGATCTGGATCCTCAATACAGCTATATAATCAAGATTTTTATTGACAAAAAGTATGCTTTGCCTTATCTGGTGTTGGATGCTTTGGTTGCTCATTTCATGAGATTTGTAGAAGACTCAAGGGTTATGCTAGTGATCTGGCATCAGACTCTTCTTGCCTTTGTTCAAAGGTTAGTAATCCTCCTCTCCCTGTAGAACAGAAAATAATTTCGTTGTCAATGACATGCTTGAGCATGTGGTTTCCCATTTTCATTTCTCCAAATATTTAAAGTTCTCAGGGACTTTTTCTTTTTTCCTGAACTTTGTGGTTTCTCTTGTTAATTTATAATGGCCTATCCCATCTTGAAGCATTCAGTTTCTTTGTATATCTGCTCATCTTTGTATGAAAATTATATTTTGTTTCTCTTTAGTTTTCAAAAAGGATGTCAGTTAATTATTTATGAGCTCTATGGAAATTAGTTATCTAGGTAATCTTGAGTAGGGTTTGTAAATTCCTGGAGATTAGTGTTTCAAATGTTGCTGTCATTGTTTCTTTAGGATTTCTATGGTCGATGGGATTGGAAATAGGTTCGTTTGTTGGTAGTTTAGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAATGAACCATAGGCGTGCATAACGAACTTTAAATGAGTCTTATAATCATATAACTAATCATCTAAATCATGAAAAAGGTTTAGAATGTGGATATAAGTTGGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAATGAACCATAGGCGTGCATAACAAACTTGAAATGAGTCTTATAATCATATAACTAATCATCTAAATCATGAAAAAGTTTAGAATTTGGACTTAGGTTCGTTTGTTGGCAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGGCCTATATTGACCCAAATGACCATTAGGCTTGCCTAACAAACTTGAAATGAGTTTCATAAACAAATAGCTAATCATATGAATCATGAAAAAGGGTTAGAATGTGGAAATAGGTTCGTTTGTTGGTAGTTGGGATCAAAAATGCCATTTTTGGCCATAAATGACATATATCGACCCAAATTACCCATAGGCGTGCATAAAGAACTTGAAATGAGTCTTATAAACATATAACTAATCATATGAATCATGAAAAACGTTTAGAATATGGAAATAGGTTCGTTTGTTGGTAATTGGGATCGAAAAAGCCATTTTTGGCCATAAATGACCTATATCGACTAAAATGAACCATAGGTGTGCATAACGAACTTGAAATGAGTTTTATAATCATATAACTAATAATCTAAATCATGAAAAAGGTTTAGAATTTGGATATAAGTTCGTTTGTTGTTAGTTGGGATCGAAAATGCCATTTTGGACATAAATGACCTATATCGACCCGAATGAACCATAGGCGTGCATAACGAACTTGAAATGAGTCTTATAATCATATAACTAATCATCTAAATCATGAAAAGGGTTTAGAATTTGGACTTAGGTTTCTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGGCCTATATCGACCCAAATGACCATTAGGCTTGCATAACGAACTTGAAATTAGTTTCATAAACATGTAACTAATCATATGAATCATGAAAAAGGGATAGAATGTGGAAATAGGTTCGTTTGTTGGTAGTTGGGATAAAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAATGACCCATAGGCGTGCATAACGAACTTGAAATAAGTCTTATAAACATATAAGTAATCATATGAATCATGAAAAACGTTTAGAATATGGAAATAGGTTCGTTTGTTGGTAATTGAGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACTCAAATGAACCATAAGCGTGCATAACGAACTTGAAATGAGTGTTATAATCATATAAATAATCATCTAAATCATGAAAAAGGTTTAGAATGTGGATATAAGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTGGCCATAAATGACCTATATCGACCCAAATGAACCATAGGCGTGCATAACGAACTTGAAATGACTCTTATAATCATATAACTAATCATCTAAATCATGAAAGAGGTTTATAATTTGGACTTAGGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGGCCTATATCGACCCAAATGACCATTAGACTTGCATAACGAACTTGAAATGAGGTTCATAAACATATAACTAATCATATGAATCATGAAAAAGGGTTAGAATGTGGAAATAGGTTCGTTTGTTGGTAGTTGGGATCAAAAATGCCATTTTTGGCCTCAAATGACCTATATCGACCCAAATGAACCATAGGCGTGCATAACGAACTTGAAATGAGTCTTATAATCATATAACTAATCATCTAAATCATGAAAAAGGTTTAGAATGTGGATATAAGTTCATTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAATGAACCATAGGCTTGCATAACGAACTTGAAATGAGTCTTATAATCATATAACTAATCATCTAAATCATGAAAAAGGTTTAGAATTTGGACTTAGGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGGCCTATATCGACCCAAATGACCATTAGGCTTGCATAACGAACTTGAAATGAGTTTCATAAACATATAACTAATCATATGAATCATGAAAAAGGGTTAGAATGTGGATATAAGTTCGTTTGTTGGTAGTTGGGATCAAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAATGACCCATAGGCGTGAATAACGAACTTGAAATGAGTCTTATAAACATATAACTAATCATATGAATCATGAAAAAGATTTAGAAAGTGTCCTTGTGTTCATTTGGTTATATTTGGGATCGAAAATACCAATATAATTTCTATTTTCGCATATGAAACTTAATTTAATTTATTGGTTTGCATGTACGTTGTTCTTTTAAAGGTTTTCAAAACACCAAAGGAGGGGCCCTTTAACAAAGAGGAGTTGGATGAAGTTCGAGACAAGTGGGCTACTTACTTCAACGATTGGGAACTACCCTCAGTGTAATAAATAGAGCAGGCTTGTAGTTATCCGTGACTCTTGCATTATTTTGTTATTTATCGATTTAATTAATTACATTTGAATTAATTCGGTAATATTATTGGAAATTTGAAAATAATATCATTTTTGAGGAATGTCAAGCTGATGTTTGGTGAAACAGTATTCTATAAATTATAATGCAGAATTTTATATTGTAAAATCAGAAATTATATTGCAGAATATCAGGAATTATATTGCAGATTTTTTTAAAAAAAAATAAACTCAAAAGTTGCCCTTGTTGCAAACAAGAGCAACTTATGTGAGGCTTATAAGTTGCCCTTGTTAAGGGCAACTTTTGATAATTTTACAAAAGTGACCCCCCCATAGGTGGCACATATGAAGGGCAACTTATAAGCCTATTTAAGGGCAACTTATGATGTTTTTTCCTCTAGTGATTTCTATTTCCGATAATATTTTCCGATACGAGCAATGTTTCCGTTTCCGGCAACATCTACGACTTGGATAATATTTCTATTTCCGTCATGATCCATATTTCCGTTTCCGGCAATATCATCATTTTAGGAGTATTCTTTATTCTGTCTTTTGACAATTTCAGCTCCCACTAGAACCGAGATCCGTCGTTTCCGAATGTTCATAAATAGAGTATTTAATGAATAATATATTCACTTAAATACTTGATCCGTTCACGTACTATTTGTGTGACCCTACGGGTTCAGTCAAGAGTAAGTTGTGGATTAATATTATTAATTCCACTTAAACTGAAGCGGCCTCTAGCTAGGCATTCAGCTCACTTGATCTCACTGAATTTATTAACTTGTTTAATTAATACTGAACCGCATTTATTAGATTTAACATTGAATGCATACTTGGACCAAGGGCATTATTTCCTTCAGTATGACTCTTCTAACTACCCACTGACCATCTGTCACACTAGCATACATGAGAGAATTACATCCACATTTCCTAGACTTTTTCTAGTTTCTCAAATTTGTTTTATTCACAAAGGATTTACCTGCTACGGGCCTCTTACTATGTTTGTCTGTTTCACCAAAGCAATCACATCTCCACGTGGCAGTAATTAGAACCTTACCCGGACCCTTCCCCGGACCAATAGCACCACAATGGACTACCCCAAACCCTTCTTGCCTTCCG

mRNA sequence

ATGGTGTTTTCTATAACAGAGTTCAAAGCTGTTACAAAGGAAATATGTAAGCTGCCATCCTTCTTCTCTATCGTCCTTTTCCAAAAGATTGATGTCAACGGTACAGAATTTGTCACCAGTGTTGCGTTGATGAGGCTAGCTGAGATGGACTACTGTGGGACTACCAGAAGACTCAAGGGTTATGCTAGTGATCTGGCATCAGACTCTTCTTGCCTTTGTTCAAAGGATTTACCTGCTACGGGCCTCTTACTATGTTTGTCTGTTTCACCAAAGCAATCACATCTCCACGTGGCAGTAATTAGAACCTTACCCGGACCCTTCCCCGGACCAATAGCACCACAATGGACTACCCCAAACCCTTCTTGCCTTCCG

Coding sequence (CDS)

ATGGTGTTTTCTATAACAGAGTTCAAAGCTGTTACAAAGGAAATATGTAAGCTGCCATCCTTCTTCTCTATCGTCCTTTTCCAAAAGATTGATGTCAACGGTACAGAATTTGTCACCAGTGTTGCGTTGATGAGGCTAGCTGAGATGGACTACTGTGGGACTACCAGAAGACTCAAGGGTTATGCTAGTGATCTGGCATCAGACTCTTCTTGCCTTTGTTCAAAGGATTTACCTGCTACGGGCCTCTTACTATGTTTGTCTGTTTCACCAAAGCAATCACATCTCCACGTGGCAGTAATTAGAACCTTACCCGGACCCTTCCCCGGACCAATAGCACCACAATGGACTACCCCAAACCCTTCTTGCCTTCCG

Protein sequence

MVFSITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTRRLKGYASDLASDSSCLCSKDLPATGLLLCLSVSPKQSHLHVAVIRTLPGPFPGPIAPQWTTPNPSCLP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02647.1	Spo02647.1	mRNA

Homology

[Close]

BLAST of Spo02647.1 vs. NCBI nr
Match: gi|902204654|gb|KNA14936.1| (hypothetical protein SOVF_102760 [Spinacia oleracea])

HSP 1 Score: 100.1 bits (248), Expect = 2.800e-18
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR 57
           +FKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR
Sbjct: 95  KFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR 144

[Close]

BLAST of Spo02647.1 vs. NCBI nr
Match: gi|902153503|gb|KNA05704.1| (hypothetical protein SOVF_187860 [Spinacia oleracea])

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-7
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           + EFKAVTKEICKLPSFFS VLFQKIDVNGT FVT  A +
Sbjct: 165 MNEFKAVTKEICKLPSFFSTVLFQKIDVNGTGFVTRDAFV 204

[Close]

BLAST of Spo02647.1 vs. NCBI nr
Match: gi|731366217|ref|XP_010694949.1| (PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-6
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           EFKAVTKEICKLPSFFS VLFQKIDVN T F+T  A +
Sbjct: 168 EFKAVTKEICKLPSFFSTVLFQKIDVNSTGFITRDAFV 205

[Close]

BLAST of Spo02647.1 vs. NCBI nr
Match: gi|731366219|ref|XP_010694950.1| (PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-6
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           + EFKAVTKEICKLPSFFS VLFQKIDVN T F+T  A +
Sbjct: 165 MNEFKAVTKEICKLPSFFSTVLFQKIDVNSTGFITRDAFV 204

[Close]

BLAST of Spo02647.1 vs. NCBI nr
Match: gi|743880858|ref|XP_011036317.1| (PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X2 [Populus euphratica])

HSP 1 Score: 59.7 bits (143), Expect = 4.200e-6
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK+VTKE+CKLPSFFS VLF++IDVN T+FVT  A +
Sbjct: 164 IHEFKSVTKEVCKLPSFFSTVLFRRIDVNSTDFVTRDAFL 203

[Close]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R601_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102760 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.000e-18
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR 57
           +FKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR
Sbjct: 95  KFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMRLAEMDYCGTTR 144

[Close]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEK5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187860 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-7
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           + EFKAVTKEICKLPSFFS VLFQKIDVNGT FVT  A +
Sbjct: 165 MNEFKAVTKEICKLPSFFSTVLFQKIDVNGTGFVTRDAFV 204

[Close]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E4I4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096520 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           + EFKAVTKEICKLPSFFS VLFQKIDVN T F+T  A +
Sbjct: 165 MNEFKAVTKEICKLPSFFSTVLFQKIDVNSTGFITRDAFV 204

[Close]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAW5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096520 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-6
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           EFKAVTKEICKLPSFFS VLFQKIDVN T F+T  A +
Sbjct: 168 EFKAVTKEICKLPSFFSTVLFQKIDVNSTGFITRDAFV 205

[Close]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Match: B9IPA8_POPTR (Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0019s03640g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.900e-6
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK+VTKE+CKLPSFFS VLF++IDVN T+FVT  A +
Sbjct: 164 IHEFKSVTKEVCKLPSFFSTVLFRRIDVNSTDFVTRDAFL 203

[Close]

BLAST of Spo02647.1 vs. ExPASy Swiss-Prot
Match: 2AB2B_ARATH (Serine/threonine protein phosphatase 2A regulatory subunit B''beta OS=Arabidopsis thaliana GN=B''BETA PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.100e-6
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK VT+EICKLPSFFS  LF+KID+N T FVT  A +
Sbjct: 161 IQEFKLVTREICKLPSFFSTSLFRKIDLNNTGFVTRDAFI 200

[Close]

BLAST of Spo02647.1 vs. ExPASy Swiss-Prot
Match: 2AB2C_ARATH (Probable serine/threonine protein phosphatase 2A regulatory subunit B''gamma OS=Arabidopsis thaliana GN=B''GAMMA PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.100e-6
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK VT+EICKLPSFFS  LF+KID+N T FVT  A +
Sbjct: 161 IQEFKLVTREICKLPSFFSTSLFRKIDLNNTGFVTRDAFI 200

[Close]

BLAST of Spo02647.1 vs. ExPASy Swiss-Prot
Match: 2AB2A_ARATH (Serine/threonine protein phosphatase 2A regulatory subunit B''alpha OS=Arabidopsis thaliana GN=B''ALPHA PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.200e-6
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMR 46
           EFK++TKE+CKLPSF S VLF+KID +GT  VT  A ++
Sbjct: 166 EFKSITKEVCKLPSFLSSVLFRKIDTSGTGIVTRDAFIK 204

[Close]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Match: AT5G28900.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.200e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK VT+EICKLPSFFS  LF+KID+N T FVT  A +
Sbjct: 161 IQEFKLVTREICKLPSFFSTSLFRKIDLNNTGFVTRDAFI 200

[Close]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Match: AT5G28850.2 (Calcium-binding EF-hand family protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.200e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALM 45
           I EFK VT+EICKLPSFFS  LF+KID+N T FVT  A +
Sbjct: 161 IQEFKLVTREICKLPSFFSTSLFRKIDLNNTGFVTRDAFI 200

[Close]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Match: AT5G44090.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.800e-7
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1

		  
Query: 7   EFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMR 46
           EFK++TKE+CKLPSF S VLF+KID +GT  VT  A ++
Sbjct: 166 EFKSITKEVCKLPSFLSSVLFRKIDTSGTGIVTRDAFIK 204

[Close]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Match: AT1G03960.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFVTSVALMR 46
           + EFK++TK++CKLPSF S  LF+KID N T+ VT  A ++
Sbjct: 155 VDEFKSITKQVCKLPSFLSPALFRKIDPNCTDIVTRDAFIK 195

[Close]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Match: AT1G54450.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.800e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1

		  
Query: 5   ITEFKAVTKEICKLPSFFSIVLFQKIDVNGTEFV 39
           + EFK VT EICK+PSFFS  +F+K+D N T FV
Sbjct: 161 LQEFKLVTTEICKVPSFFSTSIFKKVDTNNTGFV 194

The following BLAST results are available for this feature:

BLAST of Spo02647.1 vs. NCBI nr
BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
BLAST of Spo02647.1 vs. ExPASy Swiss-Prot
BLAST of Spo02647.1 vs. TAIR (Arabidopsis)

BLAST of Spo02647.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902204654\|gb\|KNA14936.1\|	2.8e-18	98.0	hypothetical protein SOVF_1027...	[more]
gi\|902153503\|gb\|KNA05704.1\|	2.2e-7	80.0	hypothetical protein SOVF_1878...	[more]
gi\|731366217\|ref\|XP_010694949.1\|	1.4e-6	78.9	PREDICTED: serine/threonine pr...	[more]
gi\|731366219\|ref\|XP_010694950.1\|	1.4e-6	75.0	PREDICTED: serine/threonine pr...	[more]
gi\|743880858\|ref\|XP_011036317.1\|	4.2e-6	70.0	PREDICTED: serine/threonine pr...	[more]

BLAST of Spo02647.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R601_SPIOL	2.0e-18	98.0	Uncharacterized protein OS=Spi...	[more]
A0A0K9QEK5_SPIOL	1.5e-7	80.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8E4I4_BETVU	1.0e-6	75.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8BAW5_BETVU	1.0e-6	78.9	Uncharacterized protein OS=Bet...	[more]
B9IPA8_POPTR	2.9e-6	70.0	Calcium-binding EF hand family...	[more]

BLAST of Spo02647.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
2AB2B_ARATH	1.1e-6	67.5	Serine/threonine protein phosp...	[more]
2AB2C_ARATH	1.1e-6	67.5	Probable serine/threonine prot...	[more]
2AB2A_ARATH	3.2e-6	61.5	Serine/threonine protein phosp...	[more]

BLAST of Spo02647.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G28900.1	6.2e-8	67.5	Calcium-binding EF-hand family...	[more]
AT5G28850.2	6.2e-8	67.5	Calcium-binding EF-hand family...	[more]
AT5G44090.1	1.8e-7	61.5	Calcium-binding EF-hand family...	[more]
AT1G03960.1	1.5e-6	53.6	Calcium-binding EF hand family...	[more]
AT1G54450.1	5.8e-6	61.7	Calcium-binding EF-hand family...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:1900140	regulation of seedling development
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0048767	root hair elongation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0010224	response to UV-B
biological_process	GO:0002237	response to molecule of bacterial origin
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0048657	anther wall tapetum cell differentiation
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0009742	brassinosteroid mediated signaling pathway
biological_process	GO:0009932	cell tip growth
biological_process	GO:0071555	cell wall organization
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009729	detection of brassinosteroid stimulus
biological_process	GO:0048366	leaf development
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0060548	negative regulation of cell death
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0010584	pollen exine formation
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006325	chromatin organization
biological_process	GO:0008152	metabolic process
biological_process	GO:0006075	(1->3)-beta-D-glucan biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
cellular_component	GO:0000148	1,3-beta-D-glucan synthase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0032991	protein-containing complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0005496	steroid binding
molecular_function	GO:0004714	transmembrane receptor protein tyrosine kinase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0015079	potassium ion transmembrane transporter activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003843	1,3-beta-D-glucan synthase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01840	0.75	Barchart \| Table
Spo04985	0.75	Barchart \| Table
Spo15420	0.75	Barchart \| Table
Spo17779	0.75	Barchart \| Table
Spo23507	0.74	Barchart \| Table
Spo12623	0.73	Barchart \| Table
Spo02818	0.73	Barchart \| Table
Spo27004	0.73	Barchart \| Table
Spo01841	0.73	Barchart \| Table
Spo23751	0.73	Barchart \| Table
Spo22818	0.72	Barchart \| Table
Spo26806	0.72	Barchart \| Table
Spo11918	0.72	Barchart \| Table
Spo24294	0.72	Barchart \| Table
Spo05557	0.72	Barchart \| Table
Spo10097	0.72	Barchart \| Table
Spo10673	0.72	Barchart \| Table
Spo21132	0.72	Barchart \| Table
Spo26833	0.72	Barchart \| Table
Spo02115	0.72	Barchart \| Table
Spo17386	0.72	Barchart \| Table
Spo17032	0.72	Barchart \| Table
Spo11243	0.71	Barchart \| Table
Spo02254	0.71	Barchart \| Table
Spo24713	0.71	Barchart \| Table
Spo21431	0.71	Barchart \| Table
Spo19682	0.71	Barchart \| Table
Spo22894	0.71	Barchart \| Table
Spo16421	0.71	Barchart \| Table
Spo01184	0.71	Barchart \| Table
Spo04999	0.71	Barchart \| Table
Spo05928	0.71	Barchart \| Table
Spo03197	0.71	Barchart \| Table
Spo11296	0.71	Barchart \| Table
Spo14275	0.70	Barchart \| Table
Spo18451	0.70	Barchart \| Table
Spo18691	0.70	Barchart \| Table
Spo12155	0.70	Barchart \| Table
Spo11384	0.70	Barchart \| Table
Spo17329	0.70	Barchart \| Table
Spo23611	0.70	Barchart \| Table
Spo20858	0.70	Barchart \| Table
Spo06465	0.70	Barchart \| Table
Spo17549	0.70	Barchart \| Table
Spo10021	0.70	Barchart \| Table
Spo24706	0.70	Barchart \| Table
Spo06962	0.70	Barchart \| Table
Spo11919	0.70	Barchart \| Table
Spo08531	0.70	Barchart \| Table
Spo10427	0.70	Barchart \| Table
Spo26706	0.70	Barchart \| Table
Spo10966	0.70	Barchart \| Table
Spo05127	0.70	Barchart \| Table
Spo17959	0.70	Barchart \| Table
Spo04885	0.70	Barchart \| Table
Spo21729	0.69	Barchart \| Table
Spo03590	0.69	Barchart \| Table
Spo20909	0.69	Barchart \| Table
Spo23664	0.69	Barchart \| Table
Spo22970	0.69	Barchart \| Table
Spo04865	0.69	Barchart \| Table
Spo00397	0.69	Barchart \| Table
Spo06018	0.69	Barchart \| Table
Spo06041	0.69	Barchart \| Table
Spo07184	0.69	Barchart \| Table
Spo07199	0.69	Barchart \| Table
Spo09949	0.69	Barchart \| Table
Spo09993	0.69	Barchart \| Table
Spo10661	0.69	Barchart \| Table
Spo24549	0.69	Barchart \| Table
Spo02345	0.69	Barchart \| Table
Spo02731	0.69	Barchart \| Table
Spo15410	0.69	Barchart \| Table
Spo15424	0.69	Barchart \| Table
Spo17211	0.69	Barchart \| Table
Spo17220	0.69	Barchart \| Table
Spo24018	0.69	Barchart \| Table
Spo17822	0.69	Barchart \| Table
Spo18542	0.69	Barchart \| Table
Spo08772	0.68	Barchart \| Table
Spo26646	0.68	Barchart \| Table
Spo26768	0.68	Barchart \| Table
Spo01397	0.68	Barchart \| Table
Spo19965	0.68	Barchart \| Table
Spo20497	0.68	Barchart \| Table
Spo18776	0.68	Barchart \| Table
Spo15865	0.68	Barchart \| Table
Spo00694	0.68	Barchart \| Table
Spo22906	0.68	Barchart \| Table
Spo03662	0.68	Barchart \| Table
Spo19558	0.68	Barchart \| Table
Spo22386	0.68	Barchart \| Table
Spo17340	0.68	Barchart \| Table
Spo03196	0.68	Barchart \| Table
Spo09351	0.68	Barchart \| Table
Spo09940	0.68	Barchart \| Table
Spo09120	0.68	Barchart \| Table
Spo10421	0.68	Barchart \| Table
Spo26190	0.68	Barchart \| Table
Spo23771	0.68	Barchart \| Table
Spo10671	0.68	Barchart \| Table
Spo00644	0.67	Barchart \| Table
Spo00486	0.67	Barchart \| Table
Spo24066	0.67	Barchart \| Table
Spo16759	0.67	Barchart \| Table
Spo20704	0.67	Barchart \| Table
Spo11069	0.67	Barchart \| Table
Spo08546	0.67	Barchart \| Table
Spo07586	0.67	Barchart \| Table
Spo07441	0.67	Barchart \| Table
Spo20639	0.67	Barchart \| Table
Spo11744	0.67	Barchart \| Table
Spo24566	0.67	Barchart \| Table
Spo19089	0.67	Barchart \| Table
Spo21465	0.67	Barchart \| Table
Spo02444	0.67	Barchart \| Table
Spo05627	0.67	Barchart \| Table
Spo13087	0.67	Barchart \| Table
Spo17225	0.67	Barchart \| Table
Spo01385	0.67	Barchart \| Table
Spo05405	0.67	Barchart \| Table
Spo20826	0.67	Barchart \| Table
Spo23346	0.67	Barchart \| Table
Spo09350	0.67	Barchart \| Table
Spo09214	0.67	Barchart \| Table
Spo03185	0.67	Barchart \| Table
Spo17498	0.66	Barchart \| Table
Spo01356	0.66	Barchart \| Table
Spo02107	0.66	Barchart \| Table
Spo03285	0.66	Barchart \| Table
Spo04179	0.66	Barchart \| Table
Spo04448	0.66	Barchart \| Table
Spo05192	0.66	Barchart \| Table
Spo05487	0.66	Barchart \| Table
Spo05666	0.66	Barchart \| Table
Spo05955	0.66	Barchart \| Table
Spo06748	0.66	Barchart \| Table
Spo08850	0.66	Barchart \| Table
Spo08963	0.66	Barchart \| Table
Spo08999	0.66	Barchart \| Table
Spo09123	0.66	Barchart \| Table
Spo11680	0.66	Barchart \| Table
Spo12364	0.66	Barchart \| Table
Spo14099	0.66	Barchart \| Table
Spo14826	0.66	Barchart \| Table
Spo15911	0.66	Barchart \| Table
Spo20011	0.66	Barchart \| Table
Spo20045	0.66	Barchart \| Table
Spo20242	0.66	Barchart \| Table
Spo20900	0.66	Barchart \| Table
Spo22748	0.66	Barchart \| Table
Spo23096	0.66	Barchart \| Table
Spo24092	0.66	Barchart \| Table
Spo24456	0.66	Barchart \| Table
Spo25879	0.66	Barchart \| Table
Spo25917	0.66	Barchart \| Table
Spo20083	0.65	Barchart \| Table
Spo19713	0.65	Barchart \| Table
Spo00236	0.65	Barchart \| Table
Spo16687	0.65	Barchart \| Table
Spo07178	0.65	Barchart \| Table
Spo16218	0.65	Barchart \| Table
Spo24369	0.65	Barchart \| Table
Spo06905	0.65	Barchart \| Table
Spo10994	0.65	Barchart \| Table
Spo10658	0.65	Barchart \| Table
Spo10222	0.65	Barchart \| Table
Spo09219	0.65	Barchart \| Table
Spo25292	0.65	Barchart \| Table
Spo25851	0.65	Barchart \| Table
Spo06673	0.65	Barchart \| Table
Spo02280	0.65	Barchart \| Table
Spo08851	0.65	Barchart \| Table
Spo26560	0.65	Barchart \| Table
Spo07426	0.65	Barchart \| Table
Spo07291	0.65	Barchart \| Table
Spo22529	0.65	Barchart \| Table
Spo23608	0.65	Barchart \| Table
Spo21784	0.65	Barchart \| Table
Spo21650	0.65	Barchart \| Table