Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAGGTGAGGAAAGGCATGAAACATCGCAAACATAGCACAAGCACAACAGGGTCAACAGCTCGAAGCACGCCGCTGAAGTTGCGCAGCCTGCTATAAAGCTTCTCGCACATTTGTTCCACTCCCACGCACTTACCAATCCGAACAAACTCACTTACCGAACTCTGAACAAAATCACCCAAATTCACCCAAATTCACCCATTTCAATGGCTTCATTTGCAGCTTCTCAAACTTGTTTCCTGACAACAAACCCCACTTGTTTAAAACCCAATTCCCCTCAAAAATCTTCCACATTTCTTCCATTTTCTGCCCCTCTTTCTTCCTCGTCATCTTTCCCTGGTTTGTAATTTTGCATTTTTTTTTGGAAGTTCTGTTCAGAAATTTGTTAAAATTTAAAGGGTGGTTTTAACTTTTGTAAATTTTGTGATTTCAGGTTGTGGGTTGGTTCATGTTGCATCAAACAAGAAAAATCGTGCTTCGTTTGTAGTGACCAATGCTGTTAGGGAGCTTGAAGGTTATGTCACTAAAGCCCAGAGTTTCAGATTTGCCATTGTTAGTTCCTTCTCTCTCTTTTTCTTATCGTAAATTATTTTAATTTGTTATGTTTAGTGTAATTTGTTCATATTGAAGTGGAAATTCGATGGAAATGATACAAATACGAATGTACATTGATGTGGATTTAGAAATTTTGCCAGTTGAATGAAAAGTATTGGGATTCAGTTTGATATTTAGAATAAGGGGATTTTTATTTAAGATATCGTTGGTATTGATGTATTATTTCAAACAATGTTATATGCAATGATGCTATTATTATATTGACGAGGATGAAGATTTTGGAAACAACATATATTTCAGAATTGGGCTACAGAATTTAGTATAGGTGGGTAATAAGATAGAGAGATAAGGGTTACTCTACAAATAAATTACACCAAGAGTGGGGTGGGACTTGGGTGTGGGGAGGGGGGCTTGGGTTACTTGTATTGAAGTAATGCAGTTGGTAGCTTTAAGGCAGATGAAGGGGAACTGTGAATTAGTTTCAAGGTTTTAGAGTGATTTAGAAAGTATTCAATGTTGAGGGAGATGACTTCTATCTGATGGATCTTAAAGATTGAACAAAGTGTTTGCAAACTGTGGGATTTCGGGATTTGTGATCTTTATTCTCTTTCTGTCAACTAATGCTTGTAGATGAGAGTTCAAGGATATTAAATGGAAGTTGTGGCATTGTGTACGTGCACTCTATTTGTGTGCCAGGGTGATTGATAACAGATAAGTTTAAGAAAAAATATAAGTTAAAAGAGCAAGCTATATAGTATATACCTAGTACAAGTGCAATCTGATTATTTATTTATTTGAAGAAGATTATATGTTAAGTGAACCGTTGTTCTTTGCTGTGGAAATCGTGGTAGATGTACTAAATGCTGTAACTTTTGTAAAGAAACAAGACTCTTAATAAAGCTTAGTGGTAGACTACTAGACTAACAATAACTTCTTGGAAGCTGCAGTAGTGAGTCAGTGAGCTAGTGATCTACAGTATATTTGTATGATTCTAACAATATCCAAATTTGATAATGTGGCTGTTTAATCTTCTGAATGAAAGCTTTACCAGAATAAGGGAGTAACCTAGGTTCTAGAATTAGTTCCCTGTAATAGGCGCCTCAACATTGATCCCTCTTTTTTTCCCTTCATGTTTTAGTGAATTGTCATTCATGATTTGTTTACATGATCATCATTGCTGGAAGAATATTACCAGTTATGAGAATATCAATTCATCATGCATGATTAGCAATTGCATGGCCATAGTTCTTTGGGGCATAATAGAAGATGATAGGTGTTTGTTTGCATCACTAATTATCTCTATTTTCTTCTTTTATTAAGGTTGTGGCTAGGTTCAACGAATTTGTGACAAGACGACTAATGGAAGGAGCTCTTGACACTTTTAAGAAATACTCTGTCAATGAAGATATTGATGTATGTGGTAACGTTGATCACCAAGGATTCTATTAAGATTGATATTTTGTAATCATCCTTTTCTTTCCATGACAGGTTGTTTGGGTTCCTGGTGCTTATGAGCTAGGTGTTACTGCACAAGCACTTGGGAAATCAGGAAAATATCATGCTATTGTTTGTCTTGGAGCTGTGGTAGGTCCTTGATACTAGAATTTCACTTCATTGCTTTTCTTTTGTCAAGACCACGGAACACTGTCCTTCCTGAACTGATCTAGGGTATTTCGCATGAATTTTAATCAAGAAAATTGTGACTTTCATTGAGTGCCATTTAGAGATTGGTCACATTTACTTAATTCTTCTGTTGAATATGTTTTATACATGTGGTTTCCAGCATGCATTGGACTCCTATACAAACTATTGTCCACTTTTGTAATGCTTCTTTTAATTTGATCTGGTACCTTAAAGTGAGGTGTCAAGGCCGAATCAAATTTTCAAATTTGTTATGATTAAAAAAATGGCTGTAATGGGGTCTTATTGGACATTCTGCTTTATGTGCAATTGTTCTGATGCCCTTTTCATATCCTTTGTATGCCTCATGCCAATAGCTCATTTCATTCAGTTTATGTAGAGTTTTTTTCCCTCTTATTGGAACCATATCTAAACTTTTATTGAGTTAATATTGCTCTATTCCTTGGTGGCACCTTTAGGTAAAAGGTGATACTTCACACTATGATGCTGTCGTTAATTCTGCTTCCTCTGGAGTACTGTCAGCTGGATTAAATTCAGGTAGAGCATCTTAGTCCATATGTTAGTAACACACTATTTGTTGGATATTGGCAAGTTTATATTTTTACTTGCAGTGCAATTTTCACTATTTCATTTCCCCATTCAGGTGTTAGAAGTTCATTATAATTCATAACTTAACGTTCGTCATGTTTACTGCATATTTTTTCATAAGGACAATTATGATTTAGTTGTTCTGCTGCAGGAGTACCTTGTGTCTTTGGTGTCCTTACCTGTGATAACATGGATCAGGTACTCTATCTCCCCCCTCTCACTTCAACATACGGATATACCATCAGAATACTGTATCTTATGCTCATTGATTACATTTATTACTTCTTTGTTGCCTGAATATATGATTTTGCGAACCTTAATACAGCGAATTGATCAATTTGTCTCTTTATAAGTAATATGTTGTTGGATAATAAATCATTTTTACCTTGAACCCCTTATGGTTTCTGCCATAGGCCCACCAATGAAGATATGTTGTTTGACCTGAAATTCGCGTTAAGCTTTGCTTCCTGTGTAATTTATGTTTATTTTCTTCATCATATTTGCAGGCCATAAATCGAGCTGGCGGGAAAGCGGGTAATAAAGGAGCCGAGTCAGCGCTAACAGCTGTAAGTTTTTACCTTAATCATTTTGATGGCCTGATATTTATCCAGAGTCCTATTTTCATGTTCTCTAATCTCCTGATTCCTGATGTAAAATTTGGAATTTGGTCTGTTTTGCCACTAGAAGGGGAAGGGGGGGAGTGTAGGTTTCTTGGCGTAGGGGAGGACACGTTTACTGCATTACTTCTGCCACATATGATAAAAATATTGACATGTTGATAGAAATCCGAAGACAGTGATGCAATTTGGATGACTAACATGTTGGCTTAAAATATTATTATCCAGTGAATGACCATATAGTTTCGGAGATGCATGACTTTGTATCTCGCTTGTAGAAATCGATGACTTTATTTATTAGAAATGACGATAACTTGAGCACCATCGAAAGATAGCAAGTCGGAAAAGTGCCTTCTTGGATCTTTACAAGTTGAGAATCATCATTTTGGATCTGTGCGGATTTGACAGTTCAATTTTTTTTCAATGTACGGTAAAAGTTGGTTTGCGTTTCTCAGCAACAAGTTATATACTCCCTATGTTGGCAGAAAAATAGTCACATTGCCTAACACCTCATAAAGTAGGCAAATGGCAATTTAACTCAAAGATTCTTTATAATAGTCGGACCATTCCTATACTTTTCCCTAGCTAATGACAATTAAGGGTATGGGTATGGTATAATGATGTAAAATCAATCACAAACCATTATGAGTACTATTTTAGGAAATGTGACCAATTTTCTAGATATCTGAGTATAGTATATGTGACTGTTTAATGGACCGAGAAGGCACGCTGTATTTATAGGTCTACAAGATGGTGCTAGTGTGCTACTGCTTCCTGCATTTCAGTTCTTTTATGTTCTTCTCATGACCACCTTCATTTTTTGGCAGATTGAAATGGCTTCGCTTTTCGAACATCATTTGAAGGCCTAACTTCAGTCTGATTGAAGTAAAAGGTAGTCCCCCTGTTCATTGAGCACTTCAAGATTGCCTAATTTTCTGAGAATGAGCATGGGGAAAGAAAGAGGGAGGGGGTTTCAGGAACTGAGAGTATAACCTTTCGTTGTAAGATGAAACTTATTTCTCCCCTGATCAAAGATGAATTCTTGGGCTGTTTTTTCCCCTTCTTTTTGTTTTTTTTTTGGTAATTTTGTTGGAANAAAGATGAATTCTTGGGCTGTTTTTTCCCCTTCCTTTTGTTTTTATTTTGGTAATTTTGTTGGAATAAATTCTTGGTAAGTTGTGAACAAGGAGCTTTGGTGCCTGAGAATACCTGTGCATTTTATTCTCCCTGCAAGTGGATCTGCTTGTCAATGAGAATACCAAGACATCTTTCCAAATGTAATCTTTTGATTTGTACCAGTTTTCATTTTCGAGTCATTTGTATTTTTGACAGTCTTGAAAGTAAGATATCAGTTGAACAGACATACAAATGTAACCCCGCTTTATAAATCGTTTATAAAATGTGTTGATTTGAGTAAGAAACATGAGTCATGACAACTGAAGTGAATTTTATATTGAAGATTCAGAGTATATTATGCTTGAACTGTTTTCTAATGCAATGCCAATGTCTCTGAAGACAATACGTCTCGTTAAATGCTGAGTATGCCTATCTTCATTACCACTCCAGCTCGAAATCTTAAAGAAATAAAAATTTCAAGCTTCACTTTAAAATTTGTAATTTTTTTTTTGGCAAGAGTAAGATAGTATTTTCCCCGCATTCAGCATGTATTGTTTCCTTG ATTAGGTGAGGAAAGGCATGAAACATCGCAAACATAGCACAAGCACAACAGGGTCAACAGCTCGAAGCACGCCGCTGAAGTTGCGCAGCCTGCTATAAAGCTTCTCGCACATTTGTTCCACTCCCACGCACTTACCAATCCGAACAAACTCACTTACCGAACTCTGAACAAAATCACCCAAATTCACCCAAATTCACCCATTTCAATGGCTTCATTTGCAGCTTCTCAAACTTGTTTCCTGACAACAAACCCCACTTGTTTAAAACCCAATTCCCCTCAAAAATCTTCCACATTTCTTCCATTTTCTGCCCCTCTTTCTTCCTCGTCATCTTTCCCTGGTTGTGGGTTGGTTCATGTTGCATCAAACAAGAAAAATCGTGCTTCGTTTGTAGTGACCAATGCTGTTAGGGAGCTTGAAGGTTATGTCACTAAAGCCCAGAGTTTCAGATTTGCCATTGTTGTGGCTAGGTTCAACGAATTTGTGACAAGACGACTAATGGAAGGAGCTCTTGACACTTTTAAGAAATACTCTGTCAATGAAGATATTGATGTTGTTTGGGTTCCTGGTGCTTATGAGCTAGGTGTTACTGCACAAGCACTTGGGAAATCAGGAAAATATCATGCTATTGTTTGTCTTGGAGCTGTGGTAAAAGGTGATACTTCACACTATGATGCTGTCGTTAATTCTGCTTCCTCTGGAGTACTGTCAGCTGGATTAAATTCAGGAGTACCTTGTGTCTTTGGTGTCCTTACCTGTGATAACATGGATCAGGCCATAAATCGAGCTGGCGGGAAAGCGGGTAATAAAGGAGCCGAGTCAGCGCTAACAGCTATTGAAATGGCTTCGCTTTTCGAACATCATTTGAAGGCCTAACTTCAGTCTGATTGAAGTAAAAGGTAGTCCCCCTGTTCATTGAGCACTTCAAGATTGCCTAATTTTCTGAGAATGAGCATGGGGAAAGAAAGAGGGAGGGGGTTTCAGGAACTGAGAGTATAACCTTTCGTTGTAAGATGAAACTTATTTCTCCCCTGATCAAAGATGAATTCTTGGGCTGTTTTTTCCCCTTCTTTTTGTTTTTTTTTTGGTAATTTTGTTGGAANAAAGATGAATTCTTGGGCTGTTTTTTCCCCTTCCTTTTGTTTTTATTTTGGTAATTTTGTTGGAATAAATTCTTGGTAAGTTGTGAACAAGGAGCTTTGGTGCCTGAGAATACCTGTGCATTTTATTCTCCCTGCAAGTGGATCTGCTTGTCAATGAGAATACCAAGACATCTTTCCAAATGTAATCTTTTGATTTGTACCAGTTTTCATTTTCGAGTCATTTGTATTTTTGACAGTCTTGAAAGTAAGATATCAGTTGAACAGACATACAAATGTAACCCCGCTTTATAAATCGTTTATAAAATGTGTTGATTTGAGTAAGAAACATGAGTCATGACAACTGAAGTGAATTTTATATTGAAGATTCAGAGTATATTATGCTTGAACTGTTTTCTAATGCAATGCCAATGTCTCTGAAGACAATACGTCTCGTTAAATGCTGAGTATGCCTATCTTCATTACCACTCCAGCTCGAAATCTTAAAGAAATAAAAATTTCAAGCTTCACTTTAAAATTTGTAATTTTTTTTTTGGCAAGAGTAAGATAGTATTTTCCCCGCATTCAGCATGTATTGTTTCCTTG ATGGCTTCATTTGCAGCTTCTCAAACTTGTTTCCTGACAACAAACCCCACTTGTTTAAAACCCAATTCCCCTCAAAAATCTTCCACATTTCTTCCATTTTCTGCCCCTCTTTCTTCCTCGTCATCTTTCCCTGGTTGTGGGTTGGTTCATGTTGCATCAAACAAGAAAAATCGTGCTTCGTTTGTAGTGACCAATGCTGTTAGGGAGCTTGAAGGTTATGTCACTAAAGCCCAGAGTTTCAGATTTGCCATTGTTGTGGCTAGGTTCAACGAATTTGTGACAAGACGACTAATGGAAGGAGCTCTTGACACTTTTAAGAAATACTCTGTCAATGAAGATATTGATGTTGTTTGGGTTCCTGGTGCTTATGAGCTAGGTGTTACTGCACAAGCACTTGGGAAATCAGGAAAATATCATGCTATTGTTTGTCTTGGAGCTGTGGTAAAAGGTGATACTTCACACTATGATGCTGTCGTTAATTCTGCTTCCTCTGGAGTACTGTCAGCTGGATTAAATTCAGGAGTACCTTGTGTCTTTGGTGTCCTTACCTGTGATAACATGGATCAGGCCATAAATCGAGCTGGCGGGAAAGCGGGTAATAAAGGAGCCGAGTCAGCGCTAACAGCTATTGAAATGGCTTCGCTTTTCGAACATCATTTGAAGGCCTAA MASFAASQTCFLTTNPTCLKPNSPQKSSTFLPFSAPLSSSSSFPGCGLVHVASNKKNRASFVVTNAVRELEGYVTKAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLKA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02751.1 vs. NCBI nr
Match: gi|20139859|sp|Q9XH32.1|RISB_SPIOL (RecName: Full=6,7-dimethyl-8-ribityllumazine synthase, chloroplastic; Short=DMRL synthase; Short=LS; Short=Lumazine synthase; Flags: Precursor) HSP 1 Score: 433.7 bits (1114), Expect = 1.900e-118 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1
BLAST of Spo02751.1 vs. NCBI nr
Match: gi|282722285|gb|ADA84250.1| (6,7-dimethyl-8-ribityllumazine synthase [Beta vulgaris]) HSP 1 Score: 386.3 bits (991), Expect = 3.500e-104 Identity = 200/224 (89.29%), Postives = 211/224 (94.20%), Query Frame = 1
BLAST of Spo02751.1 vs. NCBI nr
Match: gi|731323617|ref|XP_010672526.1| (PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 382.5 bits (981), Expect = 5.100e-103 Identity = 197/224 (87.95%), Postives = 210/224 (93.75%), Query Frame = 1
BLAST of Spo02751.1 vs. NCBI nr
Match: gi|870845275|gb|KMS98040.1| (hypothetical protein BVRB_4g096340 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 355.5 bits (911), Expect = 6.600e-95 Identity = 188/224 (83.93%), Postives = 202/224 (90.18%), Query Frame = 1
BLAST of Spo02751.1 vs. NCBI nr
Match: gi|731366180|ref|XP_010694930.1| (PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic, partial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 323.6 bits (828), Expect = 2.800e-85 Identity = 160/174 (91.95%), Postives = 169/174 (97.13%), Query Frame = 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSV5_SPIOL (6,7-dimethyl-8-ribityllumazine synthase OS=Spinacia oleracea GN=SOVF_144930 PE=3 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 1.300e-118 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Match: D2WL39_BETVU (6,7-dimethyl-8-ribityllumazine synthase OS=Beta vulgaris PE=2 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.400e-104 Identity = 200/224 (89.29%), Postives = 211/224 (94.20%), Query Frame = 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CU70_BETVU (6,7-dimethyl-8-ribityllumazine synthase OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g059400 PE=3 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 3.500e-103 Identity = 197/224 (87.95%), Postives = 210/224 (93.75%), Query Frame = 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E4J4_BETVU (6,7-dimethyl-8-ribityllumazine synthase OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g096340 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 4.600e-95 Identity = 188/224 (83.93%), Postives = 202/224 (90.18%), Query Frame = 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Match: U5FG99_POPTR (6,7-dimethyl-8-ribityllumazine synthase OS=Populus trichocarpa GN=POPTR_0017s00360g PE=3 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 6.700e-70 Identity = 135/184 (73.37%), Postives = 159/184 (86.41%), Query Frame = 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 1.200e-120 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 3.800e-66 Identity = 129/217 (59.45%), Postives = 168/217 (77.42%), Query Frame = 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Match: RISB_CLOBB (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=ribH PE=3 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 6.700e-39 Identity = 78/142 (54.93%), Postives = 106/142 (74.65%), Query Frame = 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Match: RISB_CLOP1 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) GN=ribH PE=3 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.500e-38 Identity = 79/153 (51.63%), Postives = 112/153 (73.20%), Query Frame = 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.000e-38 Identity = 77/140 (55.00%), Postives = 104/140 (74.29%), Query Frame = 1
BLAST of Spo02751.1 vs. TAIR (Arabidopsis)
Match: AT2G44050.1 (6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase) HSP 1 Score: 252.7 bits (644), Expect = 2.100e-67 Identity = 129/217 (59.45%), Postives = 168/217 (77.42%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02751.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02751.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02751.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo02751.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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