Spo02847 (gene) | SpinachBase

Overview


Name	Spo02847
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 72620036 .. 72621726 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGGTAACTTGGAAAAGGTGTTTACGATTGTAAGTTGGCTACTGTTTGATCTTTTTTCTGTTTTATTGTTTCACATGAATTAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGTTAGGTAGTAAAATTATAATCTTTACTTTCTCCAATTTATAAATGAGAAACCAAATGATTGCTTATATCGTCTTCACATGTCTTATTGCAATCAATCTTCTTGTCGTAGTTTCTGTAGAACCATTTGATGGCCTGGATGTTTGTTATAAATGTGGTGATTATCTTCACTACCTTGTACTATAAATATTATGGTTTCATGGATTCTTATCCTTTGGTATTGTATGTAGTCAAAGTAGAAGACATGTCAAACAAATGGGCCTTCATATTGGTTCATGTGGATAAGATATGATTCTATTTCGCATATGATTCTATCTTAGTTATTCTGTTTGTTAATTTTTGGAAGTATATTTTGTAGCTTTTCTTAAAATCTTTATAGGTTGTCTTCTTTTCACTAGTAGTATCTAATTTATGCAATATAGAAATCCTGAACGTTGGTTTCTTTCTTTGTAGACCATTCTAGGTATAGGGCCTTGAATTGGCAAGTTGTTAGACCGTGCAAATCAACCCAACTTCTGTTTTGTTTAGGGAAAAATAAGACTGCATAATATTCTATGAACTGATCTGAACTACATCTGTGATGTTACTAGAATTGACCTCATCTAGTTGGCAGAGTTGGCTCCTGATTTTTATGCATGGTTCTTTGTCTGTGATGATATGCATTTCATAGTTTAGTTTTACAGTCGTGTGTATTTTTTTGTTTTCAAGAGCATCATCAGATCTGCAACTAGTCGGTTTTTTCTCGTGTCTGTTGTGCCTGTCCGTGGTTTTCTCCCATGTATGTGTGCCAGAACTTTGTTGTTTGTTTGAGCATTTTTAAAGAGTTGTAAAGCCAAAATCCTACCAAAATTCTAGCATAATCCATTTACCAAAGGAGGTGTATTGTTAGTATTTTTGTAAAACTTATATATTTGTTTCATATATATCGCAAAGTTTGTATTTTTCAGTAGCTGATCTTTCACCTTATTCTTTGTTTCTTATAAATGTGAGATGTAACCAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGAGAGGTCTTTCTTCGGCTCATCTTCCTGGGAGATCTCAGATTGTCCCTAAACCTTATCTACCATTGTAGTTTTATTTATTTTTGAAGTATTTTAATGTTTTGGACAACTTGTGAGAGCTATGTCGTTTTAGGATGATTTTGATTGGTTAATAATTTTGTATTGTTTATTGGTTATATTTCGAGGTAATTGAATACTTATTCGGTTGTGATCGATTGCTTATTATTGGGACCAAATGGTTAGCGCTTTAGAGATATATGATGGTGATGTGTGGTGTACTAAATTGCCTCATTGGTCATGGAGGTGTTATTCCCTCTTTTTTAAAAATTAAAAAAAC

mRNA sequence

ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGAGAGGTCTTTCTTCGGCTCATCTTCCTGGGAGATCTCAGATTGTCCCTAAACCTTATCTACCATTGTAGTTTTATTTATTTTTGAAGTATTTTAATGTTTTGGACAACTTGTGAGAGCTATGTCGTTTTAGGATGATTTTGATTGGTTAATAATTTTGTATTGTTTATTGGTTATATTTCGAGGTAATTGAATACTTATTCGGTTGTGATCGATTGCTTATTATTGGGACCAAATGGTTAGCGCTTTAGAGATATATGATGGTGATGTGTGGTGTACTAAATTGCCTCATTGGTCATGGAGGTGTTATTCCCTCTTTTTTAAAAATTAAAAAAAC

Coding sequence (CDS)

ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGA

Protein sequence

MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESHIFFTEESLLQLEELTYWSILKDGCEADLPDAF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02847.1	Spo02847.1	mRNA

Homology

[Close]

BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218747|gb|KNA18123.1| (hypothetical protein SOVF_073650 isoform A [Spinacia oleracea])

HSP 1 Score: 193.4 bits (490), Expect = 1.800e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60

Query: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 93
          IFFTEESLLQLEELTYWSILKDGCEADLPDAF
Sbjct: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 92

[Close]

BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218748|gb|KNA18124.1| (hypothetical protein SOVF_073650 isoform B [Spinacia oleracea])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-9
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMI 39
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHR  V +I
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRMVVKLI 38

[Close]

BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218749|gb|KNA18125.1| (hypothetical protein SOVF_073650 isoform C [Spinacia oleracea])

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 32
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 31

[Close]

BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF62_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.300e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60

Query: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 93
          IFFTEESLLQLEELTYWSILKDGCEADLPDAF
Sbjct: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 92

[Close]

BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.200e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMI 39
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHR  V +I
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRMVVKLI 38

[Close]

BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF79_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

		  
Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 32
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 31

The following BLAST results are available for this feature:

BLAST of Spo02847.1 vs. NCBI nr
BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
BLAST of Spo02847.1 vs. ExPASy Swiss-Prot
BLAST of Spo02847.1 vs. TAIR (Arabidopsis)

BLAST of Spo02847.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902218747\|gb\|KNA18123.1\|	1.8e-46	100.	hypothetical protein SOVF_0736...	[more]
gi\|902218748\|gb\|KNA18124.1\|	1.0e-9	89.4	hypothetical protein SOVF_0736...	[more]
gi\|902218749\|gb\|KNA18125.1\|	1.9e-8	100.	hypothetical protein SOVF_0736...	[more]

BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RF62_SPIOL	1.3e-46	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RGP1_SPIOL	7.2e-10	89.4	Uncharacterized protein OS=Spi...	[more]
A0A0K9RF79_SPIOL	1.4e-8	100.	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo02847.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo02847.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14942	0.67	Barchart \| Table
Spo21055	0.67	Barchart \| Table
Spo08528	0.66	Barchart \| Table
Spo10658	0.66	Barchart \| Table
Spo05306	0.66	Barchart \| Table
Spo06962	0.66	Barchart \| Table
Spo27004	0.66	Barchart \| Table
Spo22894	0.66	Barchart \| Table
Spo24781	0.66	Barchart \| Table
Spo26789	0.66	Barchart \| Table
Spo20187	0.65	Barchart \| Table