Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTACCGACATCGGTTGCACCGCTTCCACGTGTTTTGCGAGGTTAGCCCATTGCTTATTACCCGCTTCAAAGTCTTCAAAGTCTCTCTCCTGTATCTGGACCCGCTTCTATTGATTGCTTGATGATGATATGATAAGTCCTGTGATCAAATCGCAAATAATCAATCACTGCCAAACAAGTATCGTTCAAAATCTGCAAATCTAAGAGTAAGAACTTCTTCACTTTGAATTATTGGTCGCAGTTTTTCTTTCATTTCTTGATTCAATGTGTACTTTCTCAATCTTGCTACAAAAAACATTGAAGACATATTTGAAGTCAAATTGTTTGTATTTAATTGAATAATTACTTAATTGTTGCAGTTGGTAGCTGATTTTTTTTTTTCTTCTTCTGGTTGCATTTTTAATTTCTGGAACCTTCTAGATCATGTGTCTTTAGCTATTTCTGAGCTTGGATTGGTGAAATTTGATAAATGAATTAGATTATTAGGGTTTTATGTAATGATGAGCTTGCAATATAATTTTTTTATAAAACCCCCAAAACTATTTAAATTATGTAGTTCCTTTGTCTCAGATTGTTTTGTATTTCACCATGATTCATCAAATTTTGATGAATATAAGTAAAATGGGTGTTTGAATTTTTCGTTTTCGCTACCCTAAATTTGGAAAACATTTGAGGGACGTGTCATTGCATCGCCTTGTCTTTGTGGGGAGATAAGATGGCTATAATCAAATAAATCAATTTTCTCATTTTTCAGTGACCAACACATGTGGAACTTTAATCGCCAAAGGGTTCTTTGATTTTCCGAACTAATTTGTAGTTGGAAATTTGGTTTCTTCATGCCTTTAGTTCATACCTGACGATTAACACTTATGCTAATCATCTTGGAAGATCAAATTTTTTAGTTTTAGGACAATATGATTGAGTATATGCTGGAAGAATAGGGCAGTTAGTTTCTTACTACTATAAATTTAGTGCTCGGATGTAGCAATGATGACAAATAATAGTTTTACTTTCTACTATGCCGTAGTAACTTTAACTCGGATCATCGGATGTTTGCAATAACAGCTAAAGTTTTGTTTTTACACCCTTCATACCGAAATGTTTGCCTACTTCAAAACTGTGATCCACAGGACCACATCATTCTGAGTAAGTATGGACTAGTTCAACTCTTTGAATTGGCAACTTAAACTTCCAACAACCAGAGAAGAAAGCATGAAAAGGGAGATGAGGGCTGTAAAGAAAGTACTGTAATATGAACATAATCATGCCCCAATGGTTTCTTGTAGAGTCAAATCAGCTGTGCAACAAGCTAACAATAATATATGTTCTCCGTTTTTACTGCAAATACTAGCTATTTTTTGAAACTATATTTTAGTTCTGAAGATTTTTTGTTGACGAATAATTGTTCTTAATTGCAAGTTGTCACGATTCTTCTGATTTATGTGCTTTCATGTTTCCTCCACCACCTCTCTTTCTAATGTAATTCCAAGAGTACCATAAATTGAACTATAGCCTTAATAATGATTGTCCGTATTTTGCAGGTGCACTGTACGGATTCTCGTAATTCTCCAAGATGTTGGATTTTAGTAAAATGAACCGTGGAGAGATTATCTTATTAGGATGTGGATGTTGTGTATTGCTCACAATACATTTCACGATACAACTTCTATCACAGCATCTGTTTTACTGGAAAACCCCCAAGGAGCAGAAGGCTATTATTGTCATTATCCTCATGGCTCCCATATATGCTGCTGTGTCTTTTGTGGGTCTGATGGATTTTCGTGGAAGCAAGGCATTTTTCATGTCATTAGAATCGATCAAGGAATGTTATGAGGCTTTGGTAAGCTTCTTGCTTGCATGGCTCCCTATTAATCATGTGATTTGTTAGCTGAGTTATCTCAACTGATTTAAAACTAAACTTCCAACCAATTTCATGCAGGTTATTGCTAAGTTTATGGCATTGATGTATAGTTACTTGAATATATCTATGAGCAAAAGTATTGTGCCAGATGAAATAAAAGGAAGAGAATTCCACCATTCATTTCCAATGACATTATTTCAGGTGAGTTTATATGCTAGCAGTTTACACGACTGCAAAAGTATTTCTCAAGCCTAACAAATTGAGTCCTGAGATTTTTTTATATGTTTTTTTGATTATTTATTTTGCACTTAAGCTGTTACTAAGCAAGTGAACTGGGATGTTGTTCTGTAAGCTAGCTTGTTCATGTTGTTTATGTCCATAATTTAGAATGCCATATTACAATGTTTAACATACAGAAATACAGAATCACAAGTTAATAACATAGAGTCACTTTGGGTTTTTTTGAAATACCCTCCGGCAGAGAACAGTTTTGTCAATTGTCATAGAAGAGAAGGGAAAAAACAAAAAGCACATCATGCTTCTAGACTGTACAAAGCTATAAACCTGTTATTTTAAAATTTTGAACACATTAAAGATTGATTCATTATAAGGAATACTCACTATATGCTTGCTTCCTTCAATTCCATTTACATTATTGTGTGGCTTCTTTTTTGAGAAGTATCAAACTAGTACCACATGTTAGTGACAAATCTAAGTTGCTTATGGGTGTGGCACTTCGTACTTCAATAAGAACATACTAGAACACCGATCGTTTCACTTCCTTGCCGGAGGAAATGGTATTCATCCGGCACAAAATTGGGAACCCATTTTCATAAGAGATAGAAGGGACTATGTTTTTGTTGTGATGACAAAGTGGATGAGCAGCAGAAAAAAAGTCAAACTCGTTAATTTGCTAATTGGGTGGAATTGATTGATCTTGGTTGTAAGTGATTTCATAAACTTAATTGTGACTGGTGGAAGGACTCTAAAAATACCTGTTGAAGGAAGGTAGACAAATTTTGCAAGTGTTAAAAGTGTATATTGTATATATATTCGAAGTTTTTAAGCATATAAAATCACAACTAGAATACGAAGTGATATCATAACCGAAAAAAGTTTGGTTGCTAATTCTGATGCTGATCTGGATTGCTAATGCAGCCTCAAACTTTACGCTTGGATCACCATACACTGAAGCTTCTGAAGCTGTGGACATGGCAGTTTGTCATGATTCGCCCAGTATGCTCCCTCTTAATGATAGCATTACAACTTGTCGGGTGGTACACCAACACTATCAGCTGGATTTTTACCATCATCCTCAACGTTTCAGTATCACTGGCTCTATATTCTTTGGTGGCCTTTTACCATGTCTTTGCTAAGGAACTTGAACCACACAAACCGCTCGTTAAGTTCTTGTGTGTTAAAGGCATCGTCTTCTTTTGCTTTTGGCAGGTATGTTTCATATATCATGTTGACTGTTGGGTGTTGCGTACTTGCTTATTTGTATAGTAGTTTATTCATTGTGTATATTAATCCTTCAACTAGTTCATGTCATTCAAGTGTTCATTTAATGTCTTTATTATTGGCAGGGTATTGTGCTCGAGATGTTGGTTGCGGCGGGGATTATTCGATCTCGTCGTGCCTGGTTGGATGTTGAACATATCGAGGAAGGAATACAGAATGTGTTGGTTTGCTTAGAGATGGTTGTGTTTTCCGTTCTTCAACAGTATGCCTACAACGTCCAACCTTACAGTGGAGATGTTGGTAAATGGAAAGTGAAGAAGAATGACTAATGAGAATAACCAACATACATGCAGCTGAATTGTGGTTGTATGACCTGTATTTTGAGTTTTGAAGTGAGATGCATATTGCTGATCATATGATATACTTTGTATAACCTGTTGTCAAGTAACATGAATGAATGGGTAAATTAGTTTAGTTATCTTATGAACTACGACGTATGTATTAGACCAATAAAGATGCCTTAACAGATGTTAAAAGGCAGGAAATTAGTGAATGTTGTAAGGTACTGCTGCAATTTCTTTACAGGCCAGAGGCTTAGTAATTTTGAATTATGTGCTAGAGATTTATAAAATGATTGCGAAGTTTGGATAACCA GTACCGACATCGGTTGCACCGCTTCCACGTGTTTTGCGAGGTTAGCCCATTGCTTATTACCCGCTTCAAAGTCTTCAAAGTCTCTCTCCTGTATCTGGACCCGCTTCTATTGATTGCTTGATGATGATATGATAAGTCCTGTGATCAAATCGCAAATAATCAATCACTGCCAAACAAGTATCGTTCAAAATCTGCAAATCTAAGAGTGCACTGTACGGATTCTCGTAATTCTCCAAGATGTTGGATTTTAGTAAAATGAACCGTGGAGAGATTATCTTATTAGGATGTGGATGTTGTGTATTGCTCACAATACATTTCACGATACAACTTCTATCACAGCATCTGTTTTACTGGAAAACCCCCAAGGAGCAGAAGGCTATTATTGTCATTATCCTCATGGCTCCCATATATGCTGCTGTGTCTTTTGTGGGTCTGATGGATTTTCGTGGAAGCAAGGCATTTTTCATGTCATTAGAATCGATCAAGGAATGTTATGAGGCTTTGGTTATTGCTAAGTTTATGGCATTGATGTATAGTTACTTGAATATATCTATGAGCAAAAGTATTGTGCCAGATGAAATAAAAGGAAGAGAATTCCACCATTCATTTCCAATGACATTATTTCAGCCTCAAACTTTACGCTTGGATCACCATACACTGAAGCTTCTGAAGCTGTGGACATGGCAGTTTGTCATGATTCGCCCAGTATGCTCCCTCTTAATGATAGCATTACAACTTGTCGGGTGGTACACCAACACTATCAGCTGGATTTTTACCATCATCCTCAACGTTTCAGTATCACTGGCTCTATATTCTTTGGTGGCCTTTTACCATGTCTTTGCTAAGGAACTTGAACCACACAAACCGCTCGTTAAGTTCTTGTGTGTTAAAGGCATCGTCTTCTTTTGCTTTTGGCAGGGTATTGTGCTCGAGATGTTGGTTGCGGCGGGGATTATTCGATCTCGTCGTGCCTGGTTGGATGTTGAACATATCGAGGAAGGAATACAGAATGTGTTGGTTTGCTTAGAGATGGTTGTGTTTTCCGTTCTTCAACAGTATGCCTACAACGTCCAACCTTACAGTGGAGATGTTGGTAAATGGAAAGTGAAGAAGAATGACTAATGAGAATAACCAACATACATGCAGCTGAATTGTGGTTGTATGACCTGTATTTTGAGTTTTGAAGTGAGATGCATATTGCTGATCATATGATATACTTTGTATAACCTGTTGTCAAGTAACATGAATGAATGGGTAAATTAGTTTAGTTATCTTATGAACTACGACGTATGTATTAGACCAATAAAGATGCCTTAACAGATGTTAAAAGGCAGGAAATTAGTGAATGTTGTAAGGTACTGCTGCAATTTCTTTACAGGCCAGAGGCTTAGTAATTTTGAATTATGTGCTAGAGATTTATAAAATGATTGCGAAGTTTGGATAACCA ATGTTGGATTTTAGTAAAATGAACCGTGGAGAGATTATCTTATTAGGATGTGGATGTTGTGTATTGCTCACAATACATTTCACGATACAACTTCTATCACAGCATCTGTTTTACTGGAAAACCCCCAAGGAGCAGAAGGCTATTATTGTCATTATCCTCATGGCTCCCATATATGCTGCTGTGTCTTTTGTGGGTCTGATGGATTTTCGTGGAAGCAAGGCATTTTTCATGTCATTAGAATCGATCAAGGAATGTTATGAGGCTTTGGTTATTGCTAAGTTTATGGCATTGATGTATAGTTACTTGAATATATCTATGAGCAAAAGTATTGTGCCAGATGAAATAAAAGGAAGAGAATTCCACCATTCATTTCCAATGACATTATTTCAGCCTCAAACTTTACGCTTGGATCACCATACACTGAAGCTTCTGAAGCTGTGGACATGGCAGTTTGTCATGATTCGCCCAGTATGCTCCCTCTTAATGATAGCATTACAACTTGTCGGGTGGTACACCAACACTATCAGCTGGATTTTTACCATCATCCTCAACGTTTCAGTATCACTGGCTCTATATTCTTTGGTGGCCTTTTACCATGTCTTTGCTAAGGAACTTGAACCACACAAACCGCTCGTTAAGTTCTTGTGTGTTAAAGGCATCGTCTTCTTTTGCTTTTGGCAGGGTATTGTGCTCGAGATGTTGGTTGCGGCGGGGATTATTCGATCTCGTCGTGCCTGGTTGGATGTTGAACATATCGAGGAAGGAATACAGAATGTGTTGGTTTGCTTAGAGATGGTTGTGTTTTCCGTTCTTCAACAGTATGCCTACAACGTCCAACCTTACAGTGGAGATGTTGGTAAATGGAAAGTGAAGAAGAATGACTAA MLDFSKMNRGEIILLGCGCCVLLTIHFTIQLLSQHLFYWKTPKEQKAIIVIILMAPIYAAVSFVGLMDFRGSKAFFMSLESIKECYEALVIAKFMALMYSYLNISMSKSIVPDEIKGREFHHSFPMTLFQPQTLRLDHHTLKLLKLWTWQFVMIRPVCSLLMIALQLVGWYTNTISWIFTIILNVSVSLALYSLVAFYHVFAKELEPHKPLVKFLCVKGIVFFCFWQGIVLEMLVAAGIIRSRRAWLDVEHIEEGIQNVLVCLEMVVFSVLQQYAYNVQPYSGDVGKWKVKKND Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02880.1 vs. NCBI nr
Match: gi|731369585|ref|XP_010696603.1| (PREDICTED: transmembrane protein 184C [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 507.7 bits (1306), Expect = 1.400e-140 Identity = 252/294 (85.71%), Postives = 272/294 (92.52%), Query Frame = 1
BLAST of Spo02880.1 vs. NCBI nr
Match: gi|823221243|ref|XP_012443313.1| (PREDICTED: transmembrane protein 184C-like [Gossypium raimondii]) HSP 1 Score: 466.5 bits (1199), Expect = 3.500e-128 Identity = 225/283 (79.51%), Postives = 259/283 (91.52%), Query Frame = 1
BLAST of Spo02880.1 vs. NCBI nr
Match: gi|359496719|ref|XP_002268954.2| (PREDICTED: transmembrane protein 184 homolog DDB_G0279555-like [Vitis vinifera]) HSP 1 Score: 463.4 bits (1191), Expect = 3.000e-127 Identity = 227/292 (77.74%), Postives = 262/292 (89.73%), Query Frame = 1
BLAST of Spo02880.1 vs. NCBI nr
Match: gi|147805940|emb|CAN61223.1| (hypothetical protein VITISV_038806 [Vitis vinifera]) HSP 1 Score: 463.0 bits (1190), Expect = 3.900e-127 Identity = 229/292 (78.42%), Postives = 260/292 (89.04%), Query Frame = 1
BLAST of Spo02880.1 vs. NCBI nr
Match: gi|255560832|ref|XP_002521429.1| (PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Ricinus communis]) HSP 1 Score: 462.6 bits (1189), Expect = 5.100e-127 Identity = 225/294 (76.53%), Postives = 259/294 (88.10%), Query Frame = 1
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B707_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g199690 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 9.600e-141 Identity = 252/294 (85.71%), Postives = 272/294 (92.52%), Query Frame = 1
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Match: A0A0D2UNJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G172600 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 2.500e-128 Identity = 225/283 (79.51%), Postives = 259/283 (91.52%), Query Frame = 1
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Match: F6H860_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0404g00020 PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 2.100e-127 Identity = 227/292 (77.74%), Postives = 262/292 (89.73%), Query Frame = 1
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Match: A5BCC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038806 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 3.500e-127 Identity = 229/292 (78.42%), Postives = 260/292 (89.04%), Query Frame = 1
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Match: A0A061GG34_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_029966 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 3.500e-127 Identity = 229/295 (77.63%), Postives = 264/295 (89.49%), Query Frame = 1
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Match: T184C_XENLA (Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 3.100e-31 Identity = 90/270 (33.33%), Postives = 147/270 (54.44%), Query Frame = 1
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=1 SV=2) HSP 1 Score: 136.7 bits (343), Expect = 4.000e-31 Identity = 87/272 (31.99%), Postives = 151/272 (55.51%), Query Frame = 1
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.000e-31 Identity = 87/272 (31.99%), Postives = 151/272 (55.51%), Query Frame = 1
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.000e-31 Identity = 86/272 (31.62%), Postives = 152/272 (55.88%), Query Frame = 1
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Match: T184C_XENTR (Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.800e-31 Identity = 89/270 (32.96%), Postives = 147/270 (54.44%), Query Frame = 1
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Match: AT4G21570.1 (Protein of unknown function (DUF300)) HSP 1 Score: 416.4 bits (1069), Expect = 1.500e-116 Identity = 204/294 (69.39%), Postives = 244/294 (82.99%), Query Frame = 1
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Match: AT1G11200.1 (Protein of unknown function (DUF300)) HSP 1 Score: 414.8 bits (1065), Expect = 4.300e-116 Identity = 201/295 (68.14%), Postives = 246/295 (83.39%), Query Frame = 1
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Match: AT1G77220.1 (Protein of unknown function (DUF300)) HSP 1 Score: 121.7 bits (304), Expect = 7.500e-28 Identity = 87/288 (30.21%), Postives = 149/288 (51.74%), Query Frame = 1
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Match: AT5G26740.1 (Protein of unknown function (DUF300)) HSP 1 Score: 109.0 bits (271), Expect = 5.000e-24 Identity = 79/270 (29.26%), Postives = 138/270 (51.11%), Query Frame = 1
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Match: AT4G38360.2 (Protein of unknown function (DUF300)) HSP 1 Score: 106.7 bits (265), Expect = 2.500e-23 Identity = 82/285 (28.77%), Postives = 141/285 (49.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02880.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02880.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02880.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo02880.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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