Spo02885 (gene) | SpinachBase

Overview


Name	Spo02885
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP-dependent RNA helicase, putative
Location	SpoScf_00326 : 140621 .. 146951 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTATATATTTGGATATATTAAACAACGCCAATATCTTATAAATTTCATTTGGGCAGGTTGCTTTGTTTCATTTTGCATCCACTTTCAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCAGTAAGTGAAATTACAAAGATCCAAACCTGTTTTTAATCTGCTGGCACTGGCAAAACCATGTTAGTTCAGAATTTGGTTAAGTTGCTTAGGAAAATTTATAGGAAAAGAAATGTTTGTGTGACTGCCCCAACAGGGGTTGTGGCCTGTGCACTTGGGGGTCAGACCCTGCACTCATTTACTGGTGTTGGCCTTGCTCAGGCTGATGCTGGGACTTTGTTGTCTAGGGTTTTGGATAACCGTACGGTTATTAATTAAAAGGTGGAAGACGGTTAAAGCATTGGTGATTGATGAGATTAGTATGGTAGAAGCTAGGGGAGCTTTTTGATTAGCTTGAATACATTTCTAGAAGTATTAGAGAGTTAGATGACCCGTGGGGCGGTATCCAGCTTGTAGTTAGTGGCGATTTCTTGAAGCTTCCACCAGTGAGCGTTGGTAAGAGTTTTGATAATCGAAAGGAATTTGCGTTCGAGCATATTCTTGGGATAGTTCGTTTCAGTTAGAAGTGGGTCTGAAAACATTCTTCAGGCAATCTGACCCAGAACATATTAAACTGCTTCAGGGTATAAGAACATGGGAGTTAAATGCTGAAGGTCTTGACCTGCTTTAGCAATGTCGTTGTTTCAAAGAGCCTGATGAGACGGTTGTGATATTATTTACAAGAATAGCAGATGTTAACCGAGTGAATGATATGAGATTGAAAGGGTTGGGAGAAGAAACTATTGTTTATGAAGACTTTGATAAAGGGGAGAAACCTTGGATTGATCAATTAAATCGTGGGATAGCGCGCACCCACTAAACTTCAGCTTTATGTAGGTGCAAGGTTGATGCCATTAAAGTAAGTGTGAAGGGCATGTTGGTGAATGGTGCTACTGGTACAATTACAAGTTTTAAAAAGTCACGTAAGAGCGACGTTGCGAAGATATGTGAACATAAACCGTTGCCATTTTGTAATTTTAGTGTGTTAATATGAAGTTAAGAGATGTATGTAATATTTATACTCCGTAGTTCTTTCTTTTTTTCGAGGATGATAAATTATTGTATATTATTTTTAAGTTATGAGACAGTGAGACGCTTATTTGATATGATAGGAATGGAATTTGATTGTATATATTAATTATTTCAATTGTTAAATTAGCATAATGGTTGCTTTCATTTTCTATTACAGGTATTTTATCAACTAAAAAAACCTTCAGAAAAAAGAGCCGACAAAAAAATATAGAATTCGTTCAAAAATACAATAGGTTTTTAGTTAAATGCTACTAATTTTAATTCATACTACATTGGATGTTCAGTGCACTAAAGTTTTCGTCATTACAAAGGATTTGACAGCGCTTATATATTGAATGCTGCTAAATGTGGCAACATCAACAACGCTTATTAAAAGCGCTATTATGTTTTTAACAGCGCTAGTGATTCACAGCGCTTAATAAGCGCTGTGTTTAAATGAAAAAAGCGCTATTAAAAGCTTGTTTTGTTGTAGTATGTGTTGGTTTGTCAAGATGTGATCAAAATGTACAGAAAAGGCCAAACTCAAGCCAACTACATGATGAAGCTTGACCTCAAAAAGGCTTATAATACAGTTGAATAGGACTTCATTGCTGAGATTTTGTAGGATCTTGGGTTCCCAAACCACTTTATTCAGTTGATCATGACATGCTTGACTACCACCCAATACTCAATCTTGATCAATGGCTCACCCACAAAGTTGATTATCCAAGAAGGGGGTTAAGACAAGTGGATCCTCTGTCTCCCCTTCTCTTCCCCCTTTGCATGGAGTACTTTTATAGGGCCATGAAATCCATAGGGGACCACCCTAACTTCAGATTTCATTCCAGGTGTAGAAGTATGAATCTCAAACCTTTGTTTTGCTGATGATCTTCTAATGTTGTGCAAGGGTGAAAAACAAATTGTGCAACTTATTTTGCAAGGTTTTTAGTGTTTCTCTGAAAGTACTGACCTAGAGCACTAGTAGAAAAAACATCATTAGTAACCCCCTATTAATAACTGACTTTGTATTGCCAGTTATAAATTGTCCACTAATAATGGGCTTATTTGCCGTGAGTTACAAATAAATTGGTTCAAGATAATTTTACCAAGCATTAGTAACCTGAAAAGCTAATACCCGTTACGATATCTGGTCGAACTTTTTTGACCTTATTACCCGTAACTAGCAAAGTTAATGTTACAAGTATGCCTGTTAATAATTCCTCTCAAATATGTTCCAAACCCCAAAACCGCTATGTTCCATCTCTCAAATATCTGAAATCTCAATCCCTCCTCGTTAGTTTCTATGCCCCAAAGTCATCTGCCCTTTTTTTCTATTCGCTGCCATTGCTCCTCCAAAATCCCCAAATTTTCCGTTATGATTCTTTCTCAACAGCTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGGTAATCTCTCTACCCTAACATTTTATTGCCAATTTTTTGATTAAATTTACTATCGATCAATTTGTGAATTCTTTTATGAATTAGGTTCTTGAAACGATTAGGTTATCAAAATTTGCAAATGAACTGCTTTTTTGTGATTTCTCATATGAAAATGCAAATTTGTTTTTTTATTTGTAAAATCTTTAGGTTTCTTTTGTAGGACATGGGAAGGTGTGAAGTGTTCACTATTGAGCATGATAACCGCGGCCGGCTCCTATTCCGTCGGCACGCGGAAGTGAGAATTGGAAGCATTCTACTTTTAGTTTCCGTAGTTATAACTGTTTGCGATAGGTTATGATGTTATTTTTAGCACTGGGAATCTGGGATAGAGATCCACCTATTCCAAGTTCTCATCTTGCTTTTTGTTGCGATTTCAATTTTGTTCAACAGCTAAGGATGCTAGGTGCACACTAGGTGTTCGATAAAATGCCAATATCAATTGGTCGATTCTCTGCATTTTCAGGTAGAGTTTATGCGCCATATTACTTAGCACTTAGCTGATTGTTCTAGATAAATAGACAGTAAAAGCTAGGCAAAAAGATGGATCAAGCTAATGGAATGAATCAATTTGTGGTGTGAGAATAACTGTCAATAGAACTTACTTCCTACCTTTCATAACACTTATAACAAGAAATTTTACGCTATTCATATACTCATAATAATTTCGGCTACATGTTTCTACTACAGAGTACTCCATATACATGTGAACATAACAAAATTGATCCTGATATACTGATCTTTACACTTTTCAATTGAACTTTATGCATTCTGTTTATTTGATACAGAAGAGTGTCTTAGTCGTTTATCAAGTAGGATGCTTAATTTTTTGCCCCTTTCAGTTATTTCTATTTTTACCTCTTCAAATCTTTCTATTGAGCTCTATCAATCCCTCACCAAGATTGAGCACTCCCATTCTTTGATTCTTGGGGCCATGATCCTGAACATATTGAAAGATGCCTCACAAAGATTTGATGATGCGAGAATTATGTATCACACTATTCACAATTTTACCCTCTGGGTACAACTGAAGTCATAGAGTAGGATTTTCATTTTAAGTAGTTTATTTTTTTTCTTACTTTTGATAAATGTTAATTTTTTATAGTTAAGAACAATCCTTGATGCTTCTCTTGTATTTTATATTCGAGGTTTGAGTCTACAGTTGTTATATATGCTGGGAGAACAAAATCTATTGTGTTTGTAGACTCTGTACTTGAATTATTTAATTAGATCAGAGTGATGTCTTTGAAGTTTCTAGATGATATAGATTAATGTTTGCACCATCTTTTATATACCTTTGTTGTATACCATCTGTTGCATACCATCTGACAGAGGCATATCTTTTATATGGCCTGGGTAGGCTCGCCCCCCATTACATTGTGTATTTTTAGTTTCGGCCCCCTCCCTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCCATTTTTAGTAACTTATCAACCCCACCATCTAATTAAATAATATATCTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTAAAATTTGAGTATAATGGTATATGTTATATAGTATATTGCTTAATTTTTTGTACTGGACCCCCTCGTAAACTTGTTCAACCTTATTGCCACTGCCATCTAATACATTTAACCTTATTGACAATTAGTAAGAATTCTTCTACTAGCTAATTAGGTTCATTCGTTAAACCAGCATCATGTCAAAATTATCTTATGTATCTGCATTTGTTTAACTGATGCAATTTGCAGAATAGTTTAACTAACTTTGATTTTATACTTGACAGAAGTAGTATGGCCGATGAACAAAATGTGCCATCTAAGAAGAGGGTAGGGGTCCATCAATGAGGGTAGGGAATCAAGTACACCTATGTTCCTCGAGTTTAATGATTTTGACTTGTGTAGTGCGGATTGGGAAGCTACCTACAGGAAACAAATTGACGCTTGTGCTAAGAGAATTGATATAAATATGGACGAATATTCGAAGATTGATAAAGGTATGAATTTATGCATCTTAACTCTCATTGTTGGTTGTTTCTGTTGGGTTAGGTTCTTTGTTTTTTGAAGAGGAAAATTGTGGGGCATCAGTTAATCTCTCAAAATTACATTTGACTCCAATCGTATCCTGCTTTTGACTGGAGCAAATGCACTGGTTTTCCTTTATACACGTCTCTCTGTATTGGAATCTTTATGGACAATGGGTTAGAGGTATTTGAATATGAGTCTGTTTGCATAATCTGTGCACTTTTTCCTACTGTATCATTTGATCCTGGAAGTTGGCAGTGCTATCATCTGACACCTAATATAACTGAGTACCTATGCTCCTTGTTTGCCCTCTCTTGGATAATCACCCCTGTTTGATACTGCAGGTGCTATACGTTTATGGTGGTCTCTCTCATAATATTCAGACAATTGATCAGGTTCTTGTCTAATGTAGTTTTTTCATTTTAATTTGTGATATATTCTGGTGTTGTGGCCATTTATTATAACATTGCGTTTTTTTATAAAACTGAAAAGCTACTTGTGGTTATTGGCTTTGTTTTTGTTTGTTATCGAGGTCTCAGGACTTTATAATATTAGGAAAACTAATCTTTAGAAATTACAAACTTCGCACCTGCTTCATTTCAGTAGTACAAAGAGTGTCTTCAGACTAATACTCTTGCATAGAATAACCAGGTCTAGTTCTGATGTTTGACACAGTTAATGGTTTATTACTAAGGAATAATAAGAATGAACAAAAATTAAATACTAATCTAATGTTGGGATAGATTACCTAGAATTATTTTATCAAAACATGTAGAACACTGAACACGTGGTAATGTGCTGAACTAAATTAATTTCCCTTGCATTACTATTGATTGAGATATTATTGACAGTGAACATGAATGAAGAACGGTTGATACATGCTAGTAGAGATGCATTGCTAAGAGTAAGGACACATGAAGTTAAGGTACTTATATAGTAATTTAATTTATGTACCATTCTAAGAATAGTAAAGGAAACAGCAAGGCAGGAATTCCGAAAGTCCAGGAGCTTAAGGCGAGTTGCGCTGCCTAGTATGTTTTTCAGTTTACTCACTATTTGTTGTATTCTTTTGGTTAATCACTTCAAGATATTGTGCCACTTATAAATTGATGAAATTTATTGTTTTTTTCCTTTGAAGATAAATTTATACAGAGAACAAAGAAGCTATACCAGGAATACTATGAAGAGGTTTTAACTAGTTTTGTTTGCAGATTGTGTGAGAAACCACAACCACGGTAGAGAAATGTAGTCGTGCTTATATTTTTTTTGTTCTACTTTATTGTTAAAGTTTTATATAATTAGGAGTTGCTATTTAGAATTTTGATGAAAAAATAAGTTTGTGATACCTCATATGTACCTCTTTATTTACTCCAATGTTATACATTCAGATTATTTTATAAATACCATTCACTTTTAT

mRNA sequence

ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCACTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGAAGTAGTATGGCCGATGAACAAAATGTGCCATCTAAGAAGAGGGTAGGGGTCCATCAATGAGGGTAGGGAATCAAGTACACCTATGTTCCTCGAGTTTAATGATTTTGACTTGTGTAGTGCGGATTGGGAAGCTACCTACAGGAAACAAATTGACGCTTGTGCTAAGAGAATTGATATAAATATGGACGAATATTCGAAGATTGATAAAGGTGCTATACGTTTATGGTGGTCTCTCTCATAATATTCAGACAATTGATCAGTGAACATGAATGAAGAACGGTTGATACATGCTAGTAGAGATGCATTGCTAAGAGTAAGGACACATGAAGTTAAGGTACTTATATAGTAATTTAATTTATGTACCATTCTAAGAATAGTAAAGGAAACAGCAAGGCAGGAATTCCGAAAGTCCAGGAGCTTAAGGCGAGTTGCGCTGCCTAGTATGTTTTTCAGTTTACTCACTATTTGTTGTATTCTTTTGGTTAATCACTTCAAGATATTGTGCCACTTATAAATTGATGAAATTTATTGTTTTTTTCCTTTGAAGATAAATTTATACAGAGAACAAAGAAGCTATACCAGGAATACTATGAAGAGGTTTTAACTAGTTTTGTTTGCAGATTGTGTGAGAAACCACAACCACGGTAGAGAAATGTAGTCGTGCTTATATTTTTTTTGTTCTACTTTATTGTTAAAGTTTTATATAATTAGGAGTTGCTATTTAGAATTTTGATGAAAAAATAAGTTTGTGATACCTCATATGTACCTCTTTATTTACTCCAATGTTATACATTCAGATTATTTTATAAATACCATTCACTTTTAT

Coding sequence (CDS)

ATGCATAGTCTAACATCAGATATGGCTATTATATCCCGCGAAGGTTCTGCTTTCGCATGGGTAGTTCGTGAAAAATCAAAGCAAGAACAAGTCAGACAGTTTTTTTTGGAACTTGCTAGTTCTAAACTTGATGATATCCTTGGTGCAGAGAAGACAGAAAAACAGGTAGATACGTATACAGTTAATTTGGTGAATATGGGGAAATTAATTTCAAGTAAGACGCATAATTTACTCAGCGTTTTTAGAAGGTTGAGGCACTCAATAACAACAACATATCTGGCGTTCTTTGCCTTCCTTGATCGTCTTCTTATGAAGTAG

Protein sequence

MHSLTSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLVNMGKLISSKTHNLLSVFRRLRHSITTTYLAFFAFLDRLLMK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02885.1	Spo02885.1	mRNA

Homology

[Close]

BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1021525019|ref|XP_016205896.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like [Arachis ipaensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 85  TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 144

Query: 65  NMGKL 70
             G++
Sbjct: 145 EQGEI 149

[Close]

BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1012219723|ref|XP_015935424.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Arachis duranensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EQGEI 575

[Close]

BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1012186616|ref|XP_015969605.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like [Arachis duranensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 384 TSDMAIISRKGSTLVKEIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 443

Query: 65  NMGKL 70
             G++
Sbjct: 444 EQGEI 448

[Close]

BLAST of Spo02885.1 vs. NCBI nr
Match: gi|1021557481|ref|XP_016170061.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Arachis ipaensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA SKL DILG EKT +Q+D  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIREKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTATVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EQGEI 575

[Close]

BLAST of Spo02885.1 vs. NCBI nr
Match: gi|470149058|ref|XP_004310060.1| (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Fragaria vesca subsp. vesca])

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-7
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     + EK    + RQ F ELA SKL DILG EKTE+QVD  T  + 
Sbjct: 511 TSDMAIISRKGSTLVREIHEKQSSNKSRQRFWELAGSKLGDILGVEKTEEQVDADTAKVG 570

Query: 65  NMGKL 70
             G++
Sbjct: 571 EDGEI 575

[Close]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IZI1_SOLCH (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GSA    +REK    + RQ F ELA SKL DILG EK+ +QVD  T  + 
Sbjct: 79  TSDMAIISRKGSALVREIREKQSMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVG 138

Query: 65  NMGKL 70
             G++
Sbjct: 139 EDGEV 143

[Close]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: K4D233_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GSA    +REK    + RQ F ELA SKL DILG EK+ +QVD  T  + 
Sbjct: 489 TSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVG 548

Query: 65  NMGKL 70
             G++
Sbjct: 549 EDGEV 553

[Close]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AKD0_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 484 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 543

Query: 65  NMGKL 70
           + G++
Sbjct: 544 DQGEI 548

[Close]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0AKD1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 491 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 550

Query: 65  NMGKL 70
           + G++
Sbjct: 551 DQGEI 555

[Close]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Match: A0A0E0C181_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-7
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAI++R+GSA    +REK    + RQ F ELA SKL +ILG EKT +QVD  T  + 
Sbjct: 275 TSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTATVG 334

Query: 65  NMGKL 70
           + G++
Sbjct: 335 DQGEI 339

[Close]

BLAST of Spo02885.1 vs. ExPASy Swiss-Prot
Match: PRP16_ARATH (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 OS=Arabidopsis thaliana GN=CUV PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.200e-7
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA S L +ILG EK+ +Q+D  T  + 
Sbjct: 460 TSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADTAVVG 519

Query: 65  NMGKL 70
           + G++
Sbjct: 520 DDGEV 524

[Close]

BLAST of Spo02885.1 vs. TAIR (Arabidopsis)
Match: AT5G13010.1 (RNA helicase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1

		  
Query: 5   TSDMAIISREGSAFAWVVREKSKQEQVRQFFLELASSKLDDILGAEKTEKQVDTYTVNLV 64
           TSDMAIISR+GS     +REK    + RQ F ELA S L +ILG EK+ +Q+D  T  + 
Sbjct: 460 TSDMAIISRKGSGLVKEIREKQSANKSRQRFWELAGSNLGNILGIEKSAEQIDADTAVVG 519

Query: 65  NMGKL 70
           + G++
Sbjct: 520 DDGEV 524

The following BLAST results are available for this feature:

BLAST of Spo02885.1 vs. NCBI nr
BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
BLAST of Spo02885.1 vs. ExPASy Swiss-Prot
BLAST of Spo02885.1 vs. TAIR (Arabidopsis)

BLAST of Spo02885.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|1021525019\|ref\|XP_016205896.1\|	1.4e-7	52.3	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|1012219723\|ref\|XP_015935424.1\|	1.4e-7	52.3	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|1012186616\|ref\|XP_015969605.1\|	1.4e-7	52.3	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|1021557481\|ref\|XP_016170061.1\|	1.4e-7	52.3	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|470149058\|ref\|XP_004310060.1\|	1.9e-7	53.8	PREDICTED: pre-mRNA-splicing f...	[more]

BLAST of Spo02885.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0V0IZI1_SOLCH	2.2e-7	53.8	Putative pre-mRNA-splicing fac...	[more]
K4D233_SOLLC	2.2e-7	53.8	Uncharacterized protein OS=Sol...	[more]
A0A0E0AKD0_9ORYZ	2.2e-7	50.7	Uncharacterized protein OS=Ory...	[more]
A0A0E0AKD1_9ORYZ	2.2e-7	50.7	Uncharacterized protein OS=Ory...	[more]
A0A0E0C181_9ORYZ	2.2e-7	50.7	Uncharacterized protein OS=Ory...	[more]

BLAST of Spo02885.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
PRP16_ARATH	3.2e-7	47.6	Pre-mRNA-splicing factor ATP-d...	[more]

BLAST of Spo02885.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G13010.1	1.8e-8	47.6	RNA helicase family protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0016102	diterpenoid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0042335	cuticle development
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016707	gibberellin 3-beta-dioxygenase activity
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0005524	ATP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17220	0.79	Barchart \| Table
Spo04985	0.74	Barchart \| Table
Spo12543	0.73	Barchart \| Table
Spo16680	0.73	Barchart \| Table
Spo01841	0.73	Barchart \| Table
Spo07079	0.72	Barchart \| Table
Spo09214	0.72	Barchart \| Table
Spo18116	0.71	Barchart \| Table
Spo04873	0.71	Barchart \| Table
Spo20045	0.70	Barchart \| Table
Spo12443	0.70	Barchart \| Table
Spo26693	0.70	Barchart \| Table
Spo26990	0.70	Barchart \| Table
Spo05765	0.70	Barchart \| Table
Spo10329	0.70	Barchart \| Table
Spo17225	0.70	Barchart \| Table
Spo15842	0.69	Barchart \| Table
Spo03163	0.69	Barchart \| Table
Spo02280	0.69	Barchart \| Table
Spo08528	0.69	Barchart \| Table
Spo08613	0.69	Barchart \| Table
Spo16076	0.69	Barchart \| Table
Spo14240	0.69	Barchart \| Table
Spo10019	0.69	Barchart \| Table
Spo10021	0.69	Barchart \| Table
Spo19609	0.69	Barchart \| Table
Spo18542	0.69	Barchart \| Table
Spo10966	0.69	Barchart \| Table
Spo06574	0.69	Barchart \| Table
Spo24601	0.68	Barchart \| Table
Spo10421	0.68	Barchart \| Table
Spo10583	0.68	Barchart \| Table
Spo00173	0.68	Barchart \| Table
Spo05444	0.68	Barchart \| Table
Spo17386	0.68	Barchart \| Table
Spo07824	0.68	Barchart \| Table
Spo22550	0.68	Barchart \| Table
Spo25417	0.68	Barchart \| Table
Spo02478	0.67	Barchart \| Table
Spo24496	0.67	Barchart \| Table
Spo24598	0.67	Barchart \| Table
Spo05603	0.67	Barchart \| Table
Spo05627	0.67	Barchart \| Table
Spo01840	0.67	Barchart \| Table
Spo01590	0.67	Barchart \| Table
Spo11069	0.67	Barchart \| Table
Spo12155	0.67	Barchart \| Table
Spo16218	0.67	Barchart \| Table
Spo16348	0.67	Barchart \| Table
Spo18776	0.67	Barchart \| Table
Spo24287	0.67	Barchart \| Table
Spo02749	0.67	Barchart \| Table
Spo23355	0.67	Barchart \| Table
Spo14172	0.66	Barchart \| Table
Spo12423	0.66	Barchart \| Table
Spo07441	0.66	Barchart \| Table
Spo27004	0.66	Barchart \| Table
Spo26806	0.66	Barchart \| Table
Spo23930	0.66	Barchart \| Table
Spo19601	0.66	Barchart \| Table
Spo26491	0.66	Barchart \| Table
Spo19793	0.66	Barchart \| Table
Spo03865	0.66	Barchart \| Table
Spo23771	0.66	Barchart \| Table
Spo22053	0.66	Barchart \| Table
Spo03772	0.66	Barchart \| Table
Spo25302	0.66	Barchart \| Table
Spo14942	0.66	Barchart \| Table
Spo00235	0.66	Barchart \| Table
Spo24294	0.66	Barchart \| Table
Spo14424	0.66	Barchart \| Table
Spo16691	0.66	Barchart \| Table
Spo16759	0.66	Barchart \| Table
Spo24736	0.65	Barchart \| Table
Spo01660	0.65	Barchart \| Table
Spo02230	0.65	Barchart \| Table
Spo03002	0.65	Barchart \| Table
Spo06580	0.65	Barchart \| Table
Spo08884	0.65	Barchart \| Table
Spo10661	0.65	Barchart \| Table
Spo15089	0.65	Barchart \| Table
Spo21600	0.65	Barchart \| Table
Spo22352	0.65	Barchart \| Table
Spo22747	0.65	Barchart \| Table
Spo22894	0.65	Barchart \| Table
Spo23856	0.65	Barchart \| Table
Spo26285	0.65	Barchart \| Table
Spo26481	0.65	Barchart \| Table
Spo26789	0.65	Barchart \| Table
Spo26814	0.65	Barchart \| Table