Spo02904 (gene)

Overview
NameSpo02904
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMetallothionein
Locationchr5 : 21906953 .. 21907793 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGCTGTGGTGGTAACTGTGGTTGTGGATCTAGCTGCGGTTGCGGCAGCAGCTGTGGAGGGTAATTTTTTTCCGTTTTCTTTTTTGTTTCTTTTTCAGATTTTTAAGTGAATCATCATCGTTTTTGACAGAGATGTCCGGATACAAGATATATTTTTGTATTTCTACAAATTAGGTTGTGATTATGTCTTAAATTACTTTTTTGTTGTTTATGTACTAGATTTTATCAAGAAATCGCGAGGGTTGAGATTTGGTCATGTCCTTCTCCTTGTTTTTTTTGAAAAAAAATGGACGATCAGTTTAAATTTTGTTATTGTATACTCCGTAATTCAATTAAATAATTGGGTTATTGTAAAATGTTGATTTAGGTGCAAGATGTTCCCTGACTTTGTGGAGAACGCCTCCAACCCCACCGTCCTCGTCTCTGGTGTTGCTCCCAAGATCTCGTAAGTCCTTTTCCCCCTTCAAGTTGCAGATCATTTGGCATTTTGAGCTTAGTACAAAAAGTTGATTAAATCTTCTAATTATACAATGATAAAGTATAATTATTTGATCAATTGTAATTACAAGTCCCACACTCCCACGTTAAATGATCTAGTTAAATAATGTTTGATTTTAAATGAGAGTTTGTGTAATTGAAACTGTGTTTCTGGTTATTAGCAACAAAAATGTTTGATTTAGCTTAATATATTCTCCTTTTATAATAAAAATTAGGAGTAATTAATAATGTTGTGAAATGAAAACAGGTTCTCTGAAGGAGCAGAGATGGGAGTGGCTGCTGAGAATGGCTGCAAGTGCGGTGCTAACTGCCAGTGCGACCCTTGCACCTGCAAATGA

mRNA sequence

ATGTCTTGCTGTGGTGGTAACTGTGGTTGTGGATCTAGCTGCGGTTGCGGCAGCAGCTGTGGAGGGTGCAAGATGTTCCCTGACTTTGTGGAGAACGCCTCCAACCCCACCGTCCTCGTCTCTGGTGTTGCTCCCAAGATCTCGTTCTCTGAAGGAGCAGAGATGGGAGTGGCTGCTGAGAATGGCTGCAAGTGCGGTGCTAACTGCCAGTGCGACCCTTGCACCTGCAAATGA

Coding sequence (CDS)

ATGTCTTGCTGTGGTGGTAACTGTGGTTGTGGATCTAGCTGCGGTTGCGGCAGCAGCTGTGGAGGGTGCAAGATGTTCCCTGACTTTGTGGAGAACGCCTCCAACCCCACCGTCCTCGTCTCTGGTGTTGCTCCCAAGATCTCGTTCTCTGAAGGAGCAGAGATGGGAGTGGCTGCTGAGAATGGCTGCAAGTGCGGTGCTAACTGCCAGTGCGACCCTTGCACCTGCAAATGA

Protein sequence

MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAENGCKCGANCQCDPCTCK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02904.1Spo02904.1mRNA


Homology
BLAST of Spo02904.1 vs. NCBI nr
Match: gi|902216507|gb|KNA17504.1| (hypothetical protein SOVF_079210 isoform A [Spinacia oleracea])

HSP 1 Score: 150.6 bits (379), Expect = 1.100e-33
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISF   A MGVAAE
Sbjct: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISF---AAMGVAAE 60

Query: 61 NGCKCGANCQCDPCTCK 78
          NGCKCGANCQCDPCTCK
Sbjct: 61 NGCKCGANCQCDPCTCK 74

BLAST of Spo02904.1 vs. NCBI nr
Match: gi|583984333|gb|AHI62953.1| (metallothionein [Halostachys caspica])

HSP 1 Score: 138.3 bits (347), Expect = 5.800e-30
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCG+ C CGS CGGCKMFPDF EN SNPTVL+SGVAPKIS++EG+EMGVA E
Sbjct: 1  MSCCGGNCGCGAGCKCGSGCGGCKMFPDFGENTSNPTVLISGVAPKISYAEGSEMGVAVE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG NCQC+PCTCK
Sbjct: 61 NDGCKCGPNCQCNPCTCK 78

BLAST of Spo02904.1 vs. NCBI nr
Match: gi|332901279|gb|AEF01492.1| (metallothionein [Salicornia brachiata])

HSP 1 Score: 136.7 bits (343), Expect = 1.700e-29
Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGS+C CG+ CGGCKMFPDF EN SNPTVL++GVAPK++++EG+EMGVAAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDFGENTSNPTVLIAGVAPKMAYAEGSEMGVAAE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG NCQC+PCTCK
Sbjct: 61 NDGCKCGPNCQCNPCTCK 78

BLAST of Spo02904.1 vs. NCBI nr
Match: gi|731310618|ref|XP_010667708.1| (PREDICTED: metallothionein-like protein type 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.0 bits (341), Expect = 2.900e-29
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGSSC CG+ CGGCKMFPDF ENAS PT+ + GVAPKIS+ EG+EMGV AE
Sbjct: 1  MSCCGGNCGCGSSCQCGNGCGGCKMFPDFGENASKPTIQIYGVAPKISYEEGSEMGVLAE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG+NCQCDPCTCK
Sbjct: 61 NDGCKCGSNCQCDPCTCK 78

BLAST of Spo02904.1 vs. NCBI nr
Match: gi|14268756|gb|AAK57884.1|AF268027_1 (metallothionein [Amaranthus cruentus])

HSP 1 Score: 131.7 bits (330), Expect = 5.400e-28
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGS+CGCG+ CGGCKMFPDF E   N TVLVSGVAPKIS+ EG+EMGVAAE
Sbjct: 1  MSCCGGNCGCGSNCGCGNGCGGCKMFPDFDEKVQNATVLVSGVAPKISYVEGSEMGVAAE 60

Query: 61 -NGCKCGANCQCDPCTCK 78
           +GC CG NC+CDPCTCK
Sbjct: 61 DDGCPCGPNCKCDPCTCK 78

BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REW1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079210 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.800e-34
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISF   A MGVAAE
Sbjct: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISF---AAMGVAAE 60

Query: 61 NGCKCGANCQCDPCTCK 78
          NGCKCGANCQCDPCTCK
Sbjct: 61 NGCKCGANCQCDPCTCK 74

BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Match: W6AWJ0_9CARY (Metallothionein OS=Halostachys caspica PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.000e-30
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCG+ C CGS CGGCKMFPDF EN SNPTVL+SGVAPKIS++EG+EMGVA E
Sbjct: 1  MSCCGGNCGCGAGCKCGSGCGGCKMFPDFGENTSNPTVLISGVAPKISYAEGSEMGVAVE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG NCQC+PCTCK
Sbjct: 61 NDGCKCGPNCQCNPCTCK 78

BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Match: F6M9W8_9CARY (Metallothionein OS=Salicornia brachiata GN=MT-2 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.200e-29
Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGS+C CG+ CGGCKMFPDF EN SNPTVL++GVAPK++++EG+EMGVAAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDFGENTSNPTVLIAGVAPKMAYAEGSEMGVAAE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG NCQC+PCTCK
Sbjct: 61 NDGCKCGPNCQCNPCTCK 78

BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FWH8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000270 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.000e-29
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGSSC CG+ CGGCKMFPDF ENAS PT+ + GVAPKIS+ EG+EMGV AE
Sbjct: 1  MSCCGGNCGCGSSCQCGNGCGGCKMFPDFGENASKPTIQIYGVAPKISYEEGSEMGVLAE 60

Query: 61 N-GCKCGANCQCDPCTCK 78
          N GCKCG+NCQCDPCTCK
Sbjct: 61 NDGCKCGSNCQCDPCTCK 78

BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Match: Q94G67_AMACR (Metallothionein OS=Amaranthus cruentus PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.800e-28
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVAAE 60
          MSCCGGNCGCGS+CGCG+ CGGCKMFPDF E   N TVLVSGVAPKIS+ EG+EMGVAAE
Sbjct: 1  MSCCGGNCGCGSNCGCGNGCGGCKMFPDFDEKVQNATVLVSGVAPKISYVEGSEMGVAAE 60

Query: 61 -NGCKCGANCQCDPCTCK 78
           +GC CG NC+CDPCTCK
Sbjct: 61 DDGCPCGPNCKCDPCTCK 78

BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Match: MT2_ACTDE (Metallothionein-like protein type 2 OS=Actinidia deliciosa GN=pKIWI504 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.600e-24
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPT-VLVSGVAPKISFSEGAEMGVAA 60
          MSCCGG CGCGSSC CGS CGGC M+PD   +    T  L+ GVAP+ ++ EG+EMGVAA
Sbjct: 1  MSCCGGKCGCGSSCSCGSGCGGCGMYPDLSYSEMTTTETLIVGVAPQKTYFEGSEMGVAA 60

Query: 61 ENGCKCGANCQCDPCTCK 78
          ENGCKCG++C+CDPCTCK
Sbjct: 61 ENGCKCGSDCKCDPCTCK 78

BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Match: MT2_CICAR (Metallothionein-like protein 2 OS=Cicer arietinum PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.300e-21
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPD--FVENASNPTVLVSGVAPKISFSEGAEMGVA 60
          MSCCGGNCGCGSSC CGS CGGCKM+PD  + E  ++ T LV GVA   +  EGAEMG  
Sbjct: 1  MSCCGGNCGCGSSCKCGSGCGGCKMYPDMSYTEQTTSET-LVMGVASGKTQFEGAEMGFG 60

Query: 61 AEN-GCKCGANCQCDPCTCK 78
          AEN GCKCG+NC C+PCTCK
Sbjct: 61 AENDGCKCGSNCTCNPCTCK 79

BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Match: MT2A_ORYSJ (Metallothionein-like protein 2A OS=Oryza sativa subsp. japonica GN=MT2A PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.900e-21
Identity = 47/80 (58.75%), Postives = 54/80 (67.50%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKISFSEGAEMGVA-- 60
          MSCCGGNCGCGS C CGS CGGCKM+P+  E  +    ++ GVAP    +EG E G A  
Sbjct: 1  MSCCGGNCGCGSGCQCGSGCGGCKMYPEMAEEVTTTQTVIMGVAPSKGHAEGLEAGAAAG 60

Query: 61 --AENGCKCGANCQCDPCTC 77
            AENGCKCG NC C+PC C
Sbjct: 61 AGAENGCKCGDNCTCNPCNC 80

BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Match: MT2_MALDO (Metallothionein-like protein type 2 OS=Malus domestica GN=MT1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.200e-20
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 1

		  

Query: 2  SCCGGNCGCGSSCGCGSSCGGCKMFPD--FVENASNPTVLVSGVAPKISFSEGAEMGVAA 61
          SCCGG CGCGS C CGS C GC M PD  ++E ++  T LV GVAP+ S  E +EMGVAA
Sbjct: 3  SCCGGKCGCGSVCSCGSGCNGCGMAPDLSYMEGSTTET-LVMGVAPQKSHMEASEMGVAA 62

Query: 62 ENGCKCGANCQCDPCTCK 78
          ENGCKCG NC C+PC CK
Sbjct: 63 ENGCKCGDNCTCNPCNCK 79

BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Match: MT2B_SOLLC (Metallothionein-like protein type 2 B OS=Solanum lycopersicum GN=MTB PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.200e-20
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPD--FVENASNPTVLVSGVAPKISFSEGAEMGVA 60
          MSCCGGNCGCGSSC CG+ CGGCKM+PD  + E+++    LV GV P+ +     EMG +
Sbjct: 1  MSCCGGNCGCGSSCKCGNGCGGCKMYPDMSYTESSTTTETLVLGVGPEKTSFGAMEMGES 60

Query: 61 --AENGCKCGANCQCDPCTC 77
            AENGCKCG++C+C+PCTC
Sbjct: 61 PVAENGCKCGSDCKCNPCTC 80

BLAST of Spo02904.1 vs. TAIR (Arabidopsis)
Match: AT3G09390.1 (metallothionein 2A)

HSP 1 Score: 89.0 bits (219), Expect = 1.400e-18
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPD--FVENASNPTVLVSGVAP--KISFSEGAEMG 60
          MSCCGGNCGCGS C CG+ CGGCKM+PD  F    +     V GVAP  K  +    E  
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPDLGFSGETTTTETFVLGVAPAMKNQYEASGESN 60

Query: 61 VAAENGCKCGANCQCDPCTCK 78
           A  + CKCG++C+CDPCTCK
Sbjct: 61 NAENDACKCGSDCKCDPCTCK 81

BLAST of Spo02904.1 vs. TAIR (Arabidopsis)
Match: AT5G02380.1 (metallothionein 2B)

HSP 1 Score: 87.8 bits (216), Expect = 3.100e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1

		  

Query: 1  MSCCGGNCGCGSSCGCGSSCGGCKMFPDFVENASNPTVLVSGVAPKIS--FSEGAEMGVA 60
          MSCCGG+CGCGS+C CG+ CGGCK +PD +EN +  T LV GVAP ++  +    E  VA
Sbjct: 1  MSCCGGSCGCGSACKCGNGCGGCKRYPD-LENTATET-LVLGVAPAMNSQYEASGETFVA 60

Query: 61 AENGCKCGANCQCDPCTCK 78
            + CKCG++C+C+PCTCK
Sbjct: 61 ENDACKCGSDCKCNPCTCK 77

The following BLAST results are available for this feature:
BLAST of Spo02904.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902216507|gb|KNA17504.1|1.1e-3394.8hypothetical protein SOVF_0792... [more]
gi|583984333|gb|AHI62953.1|5.8e-3082.0metallothionein [Halostachys c... [more]
gi|332901279|gb|AEF01492.1|1.7e-2979.4metallothionein [Salicornia br... [more]
gi|731310618|ref|XP_010667708.1|2.9e-2980.7PREDICTED: metallothionein-lik... [more]
gi|14268756|gb|AAK57884.1|AF268027_15.4e-2879.4metallothionein [Amaranthus cr... [more]
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BLAST of Spo02904.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9REW1_SPIOL7.8e-3494.8Uncharacterized protein OS=Spi... [more]
W6AWJ0_9CARY4.0e-3082.0Metallothionein OS=Halostachys... [more]
F6M9W8_9CARY1.2e-2979.4Metallothionein OS=Salicornia ... [more]
A0A0J8FWH8_BETVU2.0e-2980.7Uncharacterized protein OS=Bet... [more]
Q94G67_AMACR3.8e-2879.4Metallothionein OS=Amaranthus ... [more]
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BLAST of Spo02904.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MT2_ACTDE3.6e-2466.6Metallothionein-like protein t... [more]
MT2_CICAR1.3e-2167.5Metallothionein-like protein 2... [more]
MT2A_ORYSJ4.9e-2158.7Metallothionein-like protein 2... [more]
MT2_MALDO3.2e-2064.1Metallothionein-like protein t... [more]
MT2B_SOLLC9.2e-2058.7Metallothionein-like protein t... [more]
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BLAST of Spo02904.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G09390.11.4e-1854.3metallothionein 2A[more]
AT5G02380.13.1e-1855.7metallothionein 2B[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000347Metallothionein, family 15, plantPFAMPF01439Metallothio_2coord: 1..76
score: 1.0
NoneNo IPR availablePANTHERPTHR33543FAMILY NOT NAMEDcoord: 1..77
score: 8.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
biological_process GO:0009627 systemic acquired resistance
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005576 extracellular region
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
RNA-Seq Expression