Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTGATCACCACCTCTTATACGTACAAGGGTATATTTGTATTCTCATTTAACAAGTACTCCGTAGATAAATGAGCAACATCCACATGTCACTCCTCTCCCCCATCCACGTCTATATTATAAATGGCGAACCGGCGTGAAACCAGTCACCCAAATAACACGCTCCATTTCTCCTCCCTTATAAATCCCCACTCACTTCTCATTCCCACTTTCTAATTTTTTCTTCATTTAAAAAAGCCCTGTTTGGATCGTTAACAAAGAAAGAGAAAAACCAACCAAAAAAGTTCAAAATGTTACCGTTGAAAGCAGTGTTGTTATCAACCGGCGTCCTTTCAACGGCGGTGATACTAAAACTTTCACTGCCAGTCGTCCTAGACTTCCTCACCTCCGAGCTTCCTCTCTTCTGGTCTTTCGTACTCTCGTGGCTGCAGCCGCCGTATCTGTACCTCCTCATCAACTGCATCATCATCACCATTGTCGCGTCCTCTAAGCTTCAGCTAAGTCTCGAGGCAGAATCCGTAACTCCGGCGCCGGATAAATTCGTTGTGGTGGAGAGAGAAAATGTGCATGTGGCTGTGATGGAGGTGGATAAGGAGGAGGATGTGGTGGTGTTTGGTTATGTGGATAGTCCGGTTGTTGTTAAGGTGAATAAAGATGATCATCACGTGGTTTCGCCGCCGTTTAGGATGGAGACTTGTGTAGGAAATGGTGAGGTGGTGGACAGAGAAAGGTTTGATGATGGTGATGAGTTTGTGTTATCTAAGCCGGTGTGGAATTCGCCGGAGAAAACAACTAAGCCACCGGTGGTTGAGTCATCGCCGCTGTCTTCGGCGGAGAAACCGCCTTTTTCGGCGAGGTTCGGCCACCGGAGAGCCGTCAAAGCCAGTCCTGAAGGTAAATCTCTCAACTCTCTTTGTACAAAAGCTTCATTAATGTATTGTTTTCATTGCGAGATGATGTAAACCATATTCGACCCTTCTCCCTCCATTGTACACAAATACGAAGTATGTTTTATTCAGTAGTTGTTTTTAATTTTTATAATAAACCACTAATTTGGAGTTGATATTTTGCACAAATTGCTTGATTTCAAAAATTTCGTCATTTTTCTTGTTCAAAATTTCTGCATCACATTATTTTTCCGTGGATTAAGTTTTTCAAAATGTTTGCGTTCAAATTCGAATTTCAAAAGCAAAATGATGAATAAATTTCTCGTCAACAAAACAAAATGAATAAAAATTGATCTTTTTGAATTGGTTCGGTATTCTAACGGTAACAAACGACACTTTTGCAGGAAAAACAGTGCTGAAAGTATCACGGCCAAAAAAACAGGAGACACTGGAGTCCACGTGGCGAACCATAACTGACGGTCGATCAATGCCGCTGACACGGCACTTGAAGAAGTCTGACACATTCACAGGAGTTTCACCGGAGGCGTCTCCGGTGAGAGTGATGAAGAAGTCGGACACTTTCGGCGGCGGAAGCGGTAATTCGTCGCCGGCGAGTGCGAGTTCAAGGCTGAGGAGAGAGGCATCACCGAGTCAAGATGAGTTGAACCGCCGTGTCGAGGCGTTTATCAAGAAGTTTAACGAGGAGATGCGGCTCCAAAGGCAAGACTCGCTTAACCAATACAAAGAGATGGTCGGTCGTGTGTCCCGCTAGAATAAATTCCCATTTTACGGAGTACTATTCTTTGAAAAAATGTCTGTAAAAAGATAAATAATTATCTTTTTTTTTTCTCCCTCTGGGGGTGTTGTTTGAAGGGTGGGAGAGTTAGAGAGTTCAAATGTGAGCTAGTGAATGCAATGCTTTCAATTGCATTTCTGGTAGGAAATCAATTTGGTTGGAACCCTGTAATTAACTCAATTTTTGGTTCTTCTATAGACAATATTTTATTTTATTTATCCAGGAAACTTCGATAACAAAAATTATTTAAACATTTAT TCTGATCACCACCTCTTATACGTACAAGGGTATATTTGTATTCTCATTTAACAAGTACTCCGTAGATAAATGAGCAACATCCACATGTCACTCCTCTCCCCCATCCACGTCTATATTATAAATGGCGAACCGGCGTGAAACCAGTCACCCAAATAACACGCTCCATTTCTCCTCCCTTATAAATCCCCACTCACTTCTCATTCCCACTTTCTAATTTTTTCTTCATTTAAAAAAGCCCTGTTTGGATCGTTAACAAAGAAAGAGAAAAACCAACCAAAAAAGTTCAAAATGTTACCGTTGAAAGCAGTGTTGTTATCAACCGGCGTCCTTTCAACGGCGGTGATACTAAAACTTTCACTGCCAGTCGTCCTAGACTTCCTCACCTCCGAGCTTCCTCTCTTCTGGTCTTTCGTACTCTCGTGGCTGCAGCCGCCGTATCTGTACCTCCTCATCAACTGCATCATCATCACCATTGTCGCGTCCTCTAAGCTTCAGCTAAGTCTCGAGGCAGAATCCGTAACTCCGGCGCCGGATAAATTCGTTGTGGTGGAGAGAGAAAATGTGCATGTGGCTGTGATGGAGGTGGATAAGGAGGAGGATGTGGTGGTGTTTGGTTATGTGGATAGTCCGGTTGTTGTTAAGGTGAATAAAGATGATCATCACGTGGTTTCGCCGCCGTTTAGGATGGAGACTTGTGTAGGAAATGGTGAGGTGGTGGACAGAGAAAGGTTTGATGATGGTGATGAGTTTGTGTTATCTAAGCCGGTGTGGAATTCGCCGGAGAAAACAACTAAGCCACCGGTGGTTGAGTCATCGCCGCTGTCTTCGGCGGAGAAACCGCCTTTTTCGGCGAGGTTCGGCCACCGGAGAGCCGTCAAAGCCAGTCCTGAAGGAAAAACAGTGCTGAAAGTATCACGGCCAAAAAAACAGGAGACACTGGAGTCCACGTGGCGAACCATAACTGACGGTCGATCAATGCCGCTGACACGGCACTTGAAGAAGTCTGACACATTCACAGGAGTTTCACCGGAGGCGTCTCCGGTGAGAGTGATGAAGAAGTCGGACACTTTCGGCGGCGGAAGCGGTAATTCGTCGCCGGCGAGTGCGAGTTCAAGGCTGAGGAGAGAGGCATCACCGAGTCAAGATGAGTTGAACCGCCGTGTCGAGGCGTTTATCAAGAAGTTTAACGAGGAGATGCGGCTCCAAAGGCAAGACTCGCTTAACCAATACAAAGAGATGGTCGGTCGTGTGTCCCGCTAGAATAAATTCCCATTTTACGGAGTACTATTCTTTGAAAAAATGTCTGTAAAAAGATAAATAATTATCTTTTTTTTTTCTCCCTCTGGGGGTGTTGTTTGAAGGGTGGGAGAGTTAGAGAGTTCAAATGTGAGCTAGTGAATGCAATGCTTTCAATTGCATTTCTGGTAGGAAATCAATTTGGTTGGAACCCTGTAATTAACTCAATTTTTGGTTCTTCTATAGACAATATTTTATTTTATTTATCCAGGAAACTTCGATAACAAAAATTATTTAAACATTTAT ATGTTACCGTTGAAAGCAGTGTTGTTATCAACCGGCGTCCTTTCAACGGCGGTGATACTAAAACTTTCACTGCCAGTCGTCCTAGACTTCCTCACCTCCGAGCTTCCTCTCTTCTGGTCTTTCGTACTCTCGTGGCTGCAGCCGCCGTATCTGTACCTCCTCATCAACTGCATCATCATCACCATTGTCGCGTCCTCTAAGCTTCAGCTAAGTCTCGAGGCAGAATCCGTAACTCCGGCGCCGGATAAATTCGTTGTGGTGGAGAGAGAAAATGTGCATGTGGCTGTGATGGAGGTGGATAAGGAGGAGGATGTGGTGGTGTTTGGTTATGTGGATAGTCCGGTTGTTGTTAAGGTGAATAAAGATGATCATCACGTGGTTTCGCCGCCGTTTAGGATGGAGACTTGTGTAGGAAATGGTGAGGTGGTGGACAGAGAAAGGTTTGATGATGGTGATGAGTTTGTGTTATCTAAGCCGGTGTGGAATTCGCCGGAGAAAACAACTAAGCCACCGGTGGTTGAGTCATCGCCGCTGTCTTCGGCGGAGAAACCGCCTTTTTCGGCGAGGTTCGGCCACCGGAGAGCCGTCAAAGCCAGTCCTGAAGGAAAAACAGTGCTGAAAGTATCACGGCCAAAAAAACAGGAGACACTGGAGTCCACGTGGCGAACCATAACTGACGGTCGATCAATGCCGCTGACACGGCACTTGAAGAAGTCTGACACATTCACAGGAGTTTCACCGGAGGCGTCTCCGGTGAGAGTGATGAAGAAGTCGGACACTTTCGGCGGCGGAAGCGGTAATTCGTCGCCGGCGAGTGCGAGTTCAAGGCTGAGGAGAGAGGCATCACCGAGTCAAGATGAGTTGAACCGCCGTGTCGAGGCGTTTATCAAGAAGTTTAACGAGGAGATGCGGCTCCAAAGGCAAGACTCGCTTAACCAATACAAAGAGATGGTCGGTCGTGTGTCCCGCTAG MLPLKAVLLSTGVLSTAVILKLSLPVVLDFLTSELPLFWSFVLSWLQPPYLYLLINCIIITIVASSKLQLSLEAESVTPAPDKFVVVERENVHVAVMEVDKEEDVVVFGYVDSPVVVKVNKDDHHVVSPPFRMETCVGNGEVVDRERFDDGDEFVLSKPVWNSPEKTTKPPVVESSPLSSAEKPPFSARFGHRRAVKASPEGKTVLKVSRPKKQETLESTWRTITDGRSMPLTRHLKKSDTFTGVSPEASPVRVMKKSDTFGGGSGNSSPASASSRLRREASPSQDELNRRVEAFIKKFNEEMRLQRQDSLNQYKEMVGRVSR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02953.1 vs. NCBI nr
Match: gi|902235820|gb|KNA24099.1| (hypothetical protein SOVF_018940 [Spinacia oleracea]) HSP 1 Score: 608.2 bits (1567), Expect = 8.200e-171 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
BLAST of Spo02953.1 vs. NCBI nr
Match: gi|731365247|ref|XP_010694422.1| (PREDICTED: uncharacterized protein LOC104907226 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 303.1 bits (775), Expect = 5.700e-79 Identity = 188/328 (57.32%), Postives = 229/328 (69.82%), Query Frame = 1
BLAST of Spo02953.1 vs. NCBI nr
Match: gi|703119141|ref|XP_010101792.1| (hypothetical protein L484_018748 [Morus notabilis]) HSP 1 Score: 254.2 bits (648), Expect = 3.000e-64 Identity = 180/343 (52.48%), Postives = 225/343 (65.60%), Query Frame = 1
BLAST of Spo02953.1 vs. NCBI nr
Match: gi|1009110661|ref|XP_015896755.1| (PREDICTED: uncharacterized protein LOC107430433 [Ziziphus jujuba]) HSP 1 Score: 245.4 bits (625), Expect = 1.400e-61 Identity = 173/349 (49.57%), Postives = 216/349 (61.89%), Query Frame = 1
BLAST of Spo02953.1 vs. NCBI nr
Match: gi|778676267|ref|XP_004149308.2| (PREDICTED: uncharacterized protein LOC101210213 [Cucumis sativus]) HSP 1 Score: 243.8 bits (621), Expect = 4.100e-61 Identity = 164/352 (46.59%), Postives = 214/352 (60.80%), Query Frame = 1
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYW0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018940 PE=4 SV=1) HSP 1 Score: 608.2 bits (1567), Expect = 5.700e-171 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAF9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093080 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 4.000e-79 Identity = 188/328 (57.32%), Postives = 229/328 (69.82%), Query Frame = 1
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Match: W9RGE1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018748 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 2.100e-64 Identity = 180/343 (52.48%), Postives = 225/343 (65.60%), Query Frame = 1
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L2K5_CUCSA (Fiber expressed protein OS=Cucumis sativus GN=Csa_3G099710 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 2.800e-61 Identity = 164/352 (46.59%), Postives = 214/352 (60.80%), Query Frame = 1
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Match: F6H2E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03520 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.200e-59 Identity = 166/330 (50.30%), Postives = 209/330 (63.33%), Query Frame = 1
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Match: AT1G61260.1 (Protein of unknown function (DUF761)) HSP 1 Score: 192.6 bits (488), Expect = 3.800e-49 Identity = 148/348 (42.53%), Postives = 202/348 (58.05%), Query Frame = 1
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Match: AT1G11220.1 (Protein of unknown function (DUF761)) HSP 1 Score: 148.3 bits (373), Expect = 8.200e-36 Identity = 114/316 (36.08%), Postives = 178/316 (56.33%), Query Frame = 1
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Match: AT5G54300.1 (Protein of unknown function (DUF761)) HSP 1 Score: 140.2 bits (352), Expect = 2.200e-33 Identity = 124/335 (37.01%), Postives = 176/335 (52.54%), Query Frame = 1
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Match: AT1G11210.1 (Protein of unknown function (DUF761)) HSP 1 Score: 110.2 bits (274), Expect = 2.500e-24 Identity = 105/316 (33.23%), Postives = 162/316 (51.27%), Query Frame = 1
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Match: AT1G11230.2 (Protein of unknown function (DUF761)) HSP 1 Score: 75.1 bits (183), Expect = 8.900e-14 Identity = 109/367 (29.70%), Postives = 162/367 (44.14%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02953.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02953.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02953.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo02953.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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