Spo02989 (gene)

Overview
NameSpo02989
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 30289944 .. 30296447 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAATTCCCACCCTTCCCAATTTTCATTCCCCGCCTTTTGTTTATCTCACAAGGCAGAGGTTGCTTCCTTCTCGCTGCTTGTTGCCCCTTACACCGCCCACCCCCCTTCTCCCCTACTGCCCCAACACCGCCCACCCGCGTTTCTCCTCAACTTCCCCAACACCACCCATCGCGTTTCTCCACCAACACGACCCACCTGCAAAGCACCACCGTGTCGTGGCTTGCATATCTCCTCGACACGCGTTTGTCCCCTGATGCGCGACTGGAGCCGTGTCTCTTACTGCTGGAAGCCGTCCGTGTTTCTCCGACTAGCTTACTGCTGGAAGCCTCCCCGCAACCGCCTCATCTCCTCTCCTCTACTGCGCGCAGTGCCGCCGTCGATTGACTCCTCTCGCTGGCCACCACTAGGTTATTTCTCACCAATTTTGTGAATTATGTTCTGCAAATTTGATAATTATCCCTCAAAAGTACCAATGAGTGAATCTACCAGTTAATTTTGTTAACCCCAGTTAATTTTAATAATAATTTTGCAATTTTGTTAATTATTTTGTGAATTAACCACCAGCTATAAGTTATTTTGTGATTGACTGATTGATATAGTAAACAAAGAATTGGCTAGCTGTTCTACCTTCTTATTTCTGGTTGTGCTGTTCATTATGGTTGTTGGTTTTAAATCTTGGATGGTTTGCGTTTTTGTTAATGGTTGTGGAATCAGTGTTGTGGTGAGCATTGTTTGGAGATGTTAATACCTTTTGCAGTTGCAATGGAGATTAGTTCCCTCATTGACACACGCAATAATTATCACCACCCTGTTGGTGTTTAGTTTTACAGGTTTTGGTTTCTTTTTTTCTGGTTTGTCCATTCACAAGTTATAGTTGTGGGCTTCTCTGTTGGTTGCAGGCTGTAGTTGTGGGCTTCGCTGCAGCTGTTTTTTTTTTTGTTGGCCTCTTCTTCCGTGTGTTCGATTGTAGTTTATGCCCTGCTGCTGGTGGTGTTAGGCAGTTGGTTTTTTGTGTTTGTCTTCAGTGACTTTCTAGTTCTGTGTTGTTCTTCCCTTTTATGTTTCTTAGTATAAGCTTACTATTGTGTGCTAATTAATGTGCTAATATTTATGATTTATTTTTGACTTCGGTTGCCTGTGTGTCTGTTGGTTTTCGTTGTTGTGGTAGTTTATTGCTGAAATTTGGTGGTTTCTGCATGGTACAATTTGCAGTTCACATAAGTTGACATATGTTGACCTCTACGGAATGGAAGTTTGACACTTGTTTTGTTATTTTGCTGATCTTCTTCTTCTTATTATTTTTTTTACTTTTTGATCTATTCTGCTATTCTGATTTAGGCTTGATGTTGTTTTATTTTGTGTTGTTGTTCTGAGATGGTTTTGAGGTGCAGTTTTAGTTTTACTATTCTGCTTTCTAGCTTGATGTTTGTTGCTGCATTCTGGAATGTTGTTGCTGCATGCTGATCTGCTGTTCCTACTTTCTTGTGTTTTGCCTTGACAAAGTTGTTGAGCTGCAACTGCTTTGCTCGAGTGTGCATAAGTTGAGTTGGTGGCTGGTTGTGAAAGTCAGCTAGCAGCTCTCTTCATTTCTGAAATTCAGTTGGCTGCTCCCATGGTGTGTTTCAACATGATGATATAGATATAAACTTGAATTAAATAAATACTATTACCGTTATTTTATGCTTATCCTGTTTGTTTAGAAGGTTGCATTATGAATTATGACTAAGGGGCTTTTTTGTGTGCTAAGATTGTATATTTACTTGTCCATCTCCTTTATCTGTCGCAGGGCGTATTAAAGCTTGCAGAAAGGCTACCTTAGTGAGTATAAGCTTGTAAAGGGAGTTCAAGTTACAGATGAGTTGAATTGGAAAATGCGGAACTGTCTCGAGAGGATTTACTTGAACATTAGTGAGTATTCCTTTTTTGTAACCAATAGTGTAATTTTTTAATTAAAGATGTTTAGATAATCTTCCTATATTGATCAATATGAATTAGGTCAATGAAAGGTTATACCTAATTGGCAGCAAATTGCAAATATAAGGTCCTCATAAAGTTCAGTAAGTTCATAAAATTGCAAATTCGTTGTTTTTGTCCACCGGAAAGTTGAGTTCCGCCTTGTCCCACCTCAAAGTCATTAGCATCCATAGTGTTAACTGTGCTTCAGATTGTATATTGTTGAAAGTTCAGAGTTTTTAGCCTTTTTTCGTTACTTTCAGTTGGCATTAACTTCACAGTATACTTCACTACATACTCCTTGACATCTTGCTAGTAGTTGATGTTTGCACCGAAGTAACTCGCTGCATACTCCTTGACACCTTGCTGGTAGCTAATGTTTGTGCCTAAGTAATGTGCATTTGTTTTCATTAAGAGTGTAGTTGGGGGATTCCGAGAAAAGGTGCATGATTTTAATTTGAAAGCAGATACATACATCAAGGTGGGAATCCTAAGTTGTATGTTAGAAAATGTATGATTGACCTGAGAATTGTCTCCTGTCCTACCCAAAGCATCACTAATTGGGGCCACATTTCTCCAAACATCAGATTATATTTCTAATCTTCCCTCTCACTCTCTCAAGTACAATTCCTCCAAACTCATTCTTTCTCTCTATGAGCATCATATTATGTGGTGTAACGTCAAATTTGATCTCCATGCGGAGTAATCTCTGGTTGTTACTATGAATTTATGTATCAAACATAACTCTGTAACTCTGGAATAATTCTCAATTGTGGATCTTGCTCATCTCCACTTAGTTGTATACTAGGATTTCTGTCGTCCTAATTCTTCACGGAAAAACTGTGTCTTATTTGGACAAACGACTTTCTTGAATAAGTAGATCCTTGAACATTATATTGTTGTTTTTTTATGTATTTATTCCCATTTTGTAGTAGATATATTGATCATTGCATTTTTTAGTAGTTGCCTCAACTTGTTAGAATGTATGCCAAAAAATTGAGGGTGTGTTTCACAAATTTATCTATACTTTGAATTACTAAGGTATGGTCCTATCATTAGAACCATGTGTTAAGAAATACATCTTCCATCCATTTCTTTTGGCACTTGCCGTTGTCGCTGTTGATGGTTTGAGCTTATTGTTACAAATTCATTGGTGAAACAGGGAATGCCTTGAGAATGGTGGCTCTTGAATTCCCTAAGCTAAATCATCTATAGTAGCATGTCTTTGTTCTTAGATTTCTCATTTCTCAATTCTGATCAATCTGCACAAAGTGGGACAATTGTTATTTTTTAGAAACACAAACAAAGGAGCGTGAAACCACCAAACCCTAGTTTTAATGTATGATATCGCAGGCCAAGTCCGTCCTATTTTTGGTAAGTTGTCAGATTAGTTTGAATTGTTTGACTGTTATTCTGGTCAACTTGGGTGGTAGTCTGCTCTTCGTTGATTGCTATGATTTTCTTGATTTAGTGATTGGTATCCATGGTTCACATTTCAGCGTTCTGGATGGATTTCCTGGTGCTGTTGGGATCATGGGAAAGGATCCCCGTGCTAATCGCCAGGCTGCCAGGATTAGAGTATTAGACTGAAAGAAGACGATGCAGAATCTGTTGCACAGGAAGAACATAAACATGACCAGTTAAACCGCTGTAAGAGATTCTACTATGTCAACTGAAGGTAATTCTTGCAACTCTAGTTGATCATTCAGTCTTCCTTTTTGAGGATGTCCAACAGTGTGTTCGTATGGCTGAAGAATCCTGCACTCTGCCTTTATGTAGTTAGATATGTGCATAACTGCATCAAAACAAAACTACAAATTTATTTTTATGGGCCAGGATCGATTAATTCGTTGTTTAATTTAGAAGAAGTCTTTTTCTGTCTTTATATGCAGTTATATGCAGTTATATGCTCTTTTTCTGTCTTTATATGCAGTTATATGCTCTTTTTCTGGGGCCATGCATGAAAAGAACATGGATGAAGTGATTTATGTTTAAAAAAGATTGGCCTTTTATAGTTTTTTGAATACTGGTTGAAGAAAGATGACTATTAACTGGTTTACTTTGTAATTTTGTCCTCTTATATTATGGTGACTAAATGTTGGTCATAGTTTACAAATGTTTGTGGCATAAAGATAGCACACGGTTACGTATAGGCCTTGCTTTTGTTTATTGTTATTTAACTCCTAGCCTATCTTTTGTCCATGATATGTTATTACCTGATAACAGTTGTGTCAAAGTTTTTGACAAGATAGTGTGAACCATTATTAAATTGCTGTAGTTCTGGATCTTTATATTTAGTGTGGTTGATCTTAAAGTAGCTTCACCCAGGTACTCCTCCAGGTAATTTTGTTGAATCAATATCGGGTGCATGCTTGCTAGACTGTAACTTAAGTGTGTATTTAGTGTTGTTTAGGGTTTAGGTATAACGATCAAACGAGCCTTAAATGTGCATAACTTGACAAAACTAGGAGTGAGTCTTAGAAACATAATATTTAGTATATTAAACATGTAAAAGGTTTAGAATACCTATGTAGGTTCATTAGTGAATGATTCTTATTAACACAATGCTAAGTATATTATACATTTAAAGTGTTTAGATTTTAGAATACTTATTTAGCTTCATTAGTTGAGAGTTGAGAGCGAAAACAACCATTATAGTCAAAATATGTCCTATAACGATCAAACGAGCCTTAAATGTGCATAACTTGACCGATATAGATTTGAATGAGTCTTATAAAAATAATACTAAGCATATTAAACATGTAAAGGGTTTAAAATGCCTATTTAGCTTCATTAGTTGAGAGTTGGGAGCAAAAACAACTATTATAATCAAAATATGTCCTTTAACAATCAAACAAGACTTAAATGTGCATAACATTACCAACGTAGATAAGAATGAGTCTTAGAAACCTAATACTAAGTATATTAAACATGTAAAGAGTTTATAATACATATTTAGCTTCATTAGTTGAGAGTTGGGAGCGAAAACGACCATTATAGTCAAGATAAGTTATATAACGATCAAACGAGCCGTAGATGTGCATAACTTGACCAAAGTATATGAGAATGAGTGTTATTAACATAATACTAAGTATATTAAACATTTAAAGGGTTTAGAATACCTTTTTAGCTTCATTAGTAGTTGGGAGCGAAAACAACCATTATAGTCAAAATATGTCCTATAACGATCAAACGAGCCATAAATGTGCATAAATTGACCATAGTAAATGAGAATGTATTTTATCAACCTAATACTAATTATATTAAACGTGTAAAGGGTTTAGATAACTAATTTAGGTTCATTAGTTGAGAGTTGGGAGCGTAAACGACTATTATAGTCAAAATATGTCATGTAACTATCAAGCGAGCCTTAAATGTGCATAAGTTGACTAAAGTAGCTGAGAATGAGTCTTATCATCCTAATAATAAACATGTAAAGGGCTTAGAATACCTATTTAGTTTCCTTAGTTGAGAGGTGGGAGCGAAAACAACAATTATTGTCAAAGTATGACATATAACGATCAAACGAGCCTTAAATTGCATAATTTGACCAAAGTAGATGAGAATGAGTCTTAGCATCCTAATATTAAGTATATTGAACATGCAAATGGCTTATAATACCTATTTAGCTTCATTAGTTGAGAGTTGGGAACGAAAATAACAATTATAGTCAAAATATGACATATAACGATCAAACGAGTCTTAAATTGCATAACTTGACCAAAGTAGATGAGAATGAGTCTTATCATCCTAATATTAAGTGTATTTAATATGTAAAGGGCTTAGAATAAGTATTTAGGTTCATTACTTGAGAGTTGGGAGCGAAAAGAACAACTATAGTCAAAATATGTCCTATAACGTTCAACCGAGCCTTAAATGTGAATAAGTTAACCAAAGTAGATGAGAATGAATCTTATCATCCTAATATTAAGTTTATTAAACGTGTAAATGGTTTGGAATAAATATTTAGGTTCAGTAGTTAAGAGTTCGAATCGAAAACAGCCATTTAAGTCAAAATTGTTCATATAACTCAATTATTGTTTTAAAATAATGTCTATATTATATTTTACAATATTCATTTCTCTTACTAATTTATTACGTGTTTTTTTTGTTGGATTTGATTATAGGAATTCATGAACAAACGAATGGAGCGTTCCTTCACGACTGATGAAATAAAATGTGTTCGAGACAAGTTGGCATGATTTATTACTAATGAATGTCTTTGATTGTTCACGTTTTTAGCATTATAATGAATCTAATACTGTAGTTAGCAACCTTTTTCCAATAATCAATTTAGATACAATATGTTTTAACCCGTTGTTTGATATTTGTTTTGATTTTTTTTTTCACTTGTGTTTTTGAACGGTGTATGGATGAGCTAAGGGCATGTTTATTGGTGTATAGTATATATGTTGTGGTTGAATGAGGTTTTTTGGTGTAGGTACAGGTTTTATAGCTACAAGCCTACAACATATTGTGCTAAAGTGGTACGGGCTTGGCAAAATTTACAAAAAAAAAAAAAAAAATTGAATATTATGTGCTTGG

mRNA sequence

ATGAAAAAATTCCCACCCTTCCCAATTTTCATTCCCCGCCTTTTGTTTATCTCACAAGGCAGAGGTTGCTTCCTTCTCGCTGCTTGTTGCCCCTTACACCGCCCACCCCCCTTCTCCCCTACTGCCCCAACACCGCCCACCCGCGTTTCTCCTCAACTTCCCCAACACCACCCATCGCGTTTCTCCACCAACACGACCCACCTGCAAAGCACCACCGTGTCGTGGCTTGCATATCTCCTCGACACGCGTTTGTCCCCTGATGCGCGACTGGAGCCGTGTCTCTTACTGCTGGAAGCCGTCCGTGTTTCTCCGACTAGCTTACTGCTGGAAGCCTCCCCGCAACCGCCTCATCTCCTCTCCTCTACTGCGCGCAGTGCCGCCGTCGATTGACTCCTCTCGCTGGCCACCACTAGGGCGTATTAAAGCTTGCAGAAAGGCTACCTTAGTGAGTATAAGCTTGTAAAGGGAGTTCAAGTTACAGATGAGTTGAATTGGAAAATGCGGAACTGTCTCGAGAGGATTTACTTGAACATTACGTTCTGGATGGATTTCCTGGTGCTGTTGGGATCATGGGAAAGGATCCCCGTGCTAATCGCCAGGCTGCCAGGATTAGAGTATTAGACTGAAAGAAGACGATGCAGAATCTGTTGCACAGGAAGAACATAAACATGACCAGTTAAACCGCTGTAAGAGATTCTACTATGTCAACTGAAGGAATTCATGAACAAACGAATGGAGCGTTCCTTCACGACTGATGAAATAAAATGTGTTCGAGACAAGTTGGCATGATTTATTACTAATGAATGTCTTTGATTGTTCACGTTTTTAGCATTATAATGAATCTAATACTGTAGTTAGCAACCTTTTTCCAATAATCAATTTAGATACAATATGTTTTAACCCGTTGTTTGATATTTGTTTTGATTTTTTTTTTCACTTGTGTTTTTGAACGGTGTATGGATGAGCTAAGGGCATGTTTATTGGTGTATAGTATATATGTTGTGGTTGAATGAGGTTTTTTGGTGTAGGTACAGGTTTTATAGCTACAAGCCTACAACATATTGTGCTAAAGTGGTACGGGCTTGGCAAAATTTACAAAAAAAAAAAAAAAAATTGAATATTATGTGCTTGG

Coding sequence (CDS)

ATGAAAAAATTCCCACCCTTCCCAATTTTCATTCCCCGCCTTTTGTTTATCTCACAAGGCAGAGGTTGCTTCCTTCTCGCTGCTTGTTGCCCCTTACACCGCCCACCCCCCTTCTCCCCTACTGCCCCAACACCGCCCACCCGCGTTTCTCCTCAACTTCCCCAACACCACCCATCGCGTTTCTCCACCAACACGACCCACCTGCAAAGCACCACCGTGTCGTGGCTTGCATATCTCCTCGACACGCGTTTGTCCCCTGATGCGCGACTGGAGCCGTGTCTCTTACTGCTGGAAGCCGTCCGTGTTTCTCCGACTAGCTTACTGCTGGAAGCCTCCCCGCAACCGCCTCATCTCCTCTCCTCTACTGCGCGCAGTGCCGCCGTCGATTGA

Protein sequence

MKKFPPFPIFIPRLLFISQGRGCFLLAACCPLHRPPPFSPTAPTPPTRVSPQLPQHHPSRFSTNTTHLQSTTVSWLAYLLDTRLSPDARLEPCLLLLEAVRVSPTSLLLEASPQPPHLLSSTARSAAVD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02989.1Spo02989.1mRNA


Homology
[Close]
BLAST of Spo02989.1 vs. NCBI nr
Match: gi|902228241|gb|KNA21026.1| (hypothetical protein SOVF_046770 [Spinacia oleracea])

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-8
Identity = 53/129 (41.09%), Postives = 60/129 (46.51%), Query Frame = 1 

		  

Query: 1   MKKFPPFPIFIPRLLFISQGRGCFLLAACCPLHRPPPFSPTAPTPPTRVSPQLPQHHPSR 60
           MKKFPPFPIFIPRL F  +           P    P FSPTAPTPPT     LPQH P  
Sbjct: 1   MKKFPPFPIFIPRLCFSHKSELTSFSLLVAPNTAHPRFSPTAPTPPTVF---LPQHGPPA 60

Query: 61  FSTNTTHLQSTTVSWLAYLLDTRLSPDARLEPCLLLLEAVRVSPTSLLLEASPQPPHLLS 120
                    S   +++       +S  A   P  L L      P       + QPPHLLS
Sbjct: 61  KHHRVVASISPQPAFVPRCATEAVSLTAGSRPMFLRLAYCWKPP------RNRQPPHLLS 120

Query: 121 STARSAAVD 130
           ST R+AAVD
Sbjct: 121 STTRTAAVD 120
[Close]
BLAST of Spo02989.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNC4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046770 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-8
Identity = 53/129 (41.09%), Postives = 60/129 (46.51%), Query Frame = 1 

		  

Query: 1   MKKFPPFPIFIPRLLFISQGRGCFLLAACCPLHRPPPFSPTAPTPPTRVSPQLPQHHPSR 60
           MKKFPPFPIFIPRL F  +           P    P FSPTAPTPPT     LPQH P  
Sbjct: 1   MKKFPPFPIFIPRLCFSHKSELTSFSLLVAPNTAHPRFSPTAPTPPTVF---LPQHGPPA 60

Query: 61  FSTNTTHLQSTTVSWLAYLLDTRLSPDARLEPCLLLLEAVRVSPTSLLLEASPQPPHLLS 120
                    S   +++       +S  A   P  L L      P       + QPPHLLS
Sbjct: 61  KHHRVVASISPQPAFVPRCATEAVSLTAGSRPMFLRLAYCWKPP------RNRQPPHLLS 120

Query: 121 STARSAAVD 130
           ST R+AAVD
Sbjct: 121 STTRTAAVD 120
The following BLAST results are available for this feature:
BLAST of Spo02989.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902228241|gb|KNA21026.1|2.7e-841.0hypothetical protein SOVF_0467... [more]
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BLAST of Spo02989.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RNC4_SPIOL1.9e-841.0Uncharacterized protein OS=Spi... [more]
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BLAST of Spo02989.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo02989.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0006833 water transport
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0010162 seed dormancy process
biological_process GO:0048767 root hair elongation
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0046686 response to cadmium ion
biological_process GO:0051258 protein polymerization
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0007018 microtubule-based movement
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0009932 cell tip growth
biological_process GO:0006972 hyperosmotic response
biological_process GO:0071555 cell wall organization
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0007030 Golgi organization
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
RNA-Seq Expression