Spo03116 (gene) | SpinachBase

Overview


Name	Spo03116
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	Super_scaffold_102 : 483368 .. 485495 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGGTGAGCTTGCTAGGAGTGGCTATCAATTTTTCAGCGAGTCACTAAGCACTTTCTCTATTACTCGATTTATTTTGTATGCTCTTCTTACTCAAATTTTACATTCCTTCTAATAATGAATATATTGGGTTCTGTTTGGCCTTTTTCCAGTGATTTGCTTCGTTTGGGTTACATAAATCCTCTTGTTTTATTTCATTATATCAATTGAGGCATTTTTCAAAGATTTTCGATTGAGTTATTGTGAAAATTTATGATCTAGTAGGTAGTCATATGATTGTTACCGAGGAGAAAACATACTTAATTATCATTTCTTGAATGATTTTGCATTACATTTTAAATCCTGTTAAAAATTGGGAATTACATGAAATTGGTTGATAAAAAATGTCATGTTTGCGTCTCCCTCCTGGTATTTGATGTTAATTACACTTGTTAGTGAAAAGGCCCGTTTGTTGTGTTTTATAGGACTCTATTTGACCTTTACCTCCTTGAAAACATAAGTGATGATGGAATCTACCTTCTTGAAAATGGCATGGATGATTTAATTTATATAGGCTTTAATTTAATGAGATACGACGTCATATTTACGGTACACCTACAAGTTCTCTTGATTTTTAAAGACAAATGTGCATAATCTATGTCGTGAAATGTCATTAATTACTAACAATTACCTTCTTGCAGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGGTAACATGCCAGACTTTCTATCTAGCGATTAGGTTAATATAAATTTGGATATATGTAGCTTACCCTATACACACATTCTCGTATAAGTATTGCTTGTTTGTGTGAGCATACATTCACATATATGTAGGTCTGCGGTGTGATCAATTTGTACCAATTTGTACCGCACATTCTCGTATAAGTATTGCTTGTTTGTGTGAAAATACACTCATATAATGATTGATCTCTTCTTATCAATTAAGCTAGTGGTGTGAAAAAATCTCCTGCTAGTAAGTGTTACAACAAGGCTTCTGGCTAGCAAATATGAAAAGGTCTCAGCTCCGGTTGTTGAAGATCTAGTACTGATATATAACAGGGATTAGAGTAGGCAAGAAGTTCTTGACATGGTAAGCATCTACAGATTGGTATTATCAGTGTTGTACATTCTACACTACAAGCAAAAGTAACACTAATTTCTTCTATGTCCTATGACAGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

mRNA sequence

CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

Coding sequence (CDS)

ATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGA

Protein sequence

MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLFSGVKKSPARIRVGKKFLTWRD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo03116.1	Spo03116.1	mRNA

Homology

[Close]

BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187796|gb|KNA10988.1| (hypothetical protein SOVF_139320 isoform B [Spinacia oleracea])

HSP 1 Score: 134.4 bits (337), Expect = 8.800e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68

[Close]

BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187795|gb|KNA10987.1| (hypothetical protein SOVF_139320 isoform A [Spinacia oleracea])

HSP 1 Score: 120.6 bits (301), Expect = 1.300e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902229937|gb|KNA21651.1| (hypothetical protein SOVF_041300, partial [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81

[Close]

BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.100e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68

[Close]

BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUL8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.100e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ55_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_041300 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.300e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1

		  
Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81

The following BLAST results are available for this feature:

BLAST of Spo03116.1 vs. NCBI nr
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
BLAST of Spo03116.1 vs. ExPASy Swiss-Prot
BLAST of Spo03116.1 vs. TAIR (Arabidopsis)

BLAST of Spo03116.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902187796\|gb\|KNA10988.1\|	8.8e-29	100.	hypothetical protein SOVF_1393...	[more]
gi\|902187795\|gb\|KNA10987.1\|	1.3e-24	100.	hypothetical protein SOVF_1393...	[more]
gi\|902229937\|gb\|KNA21651.1\|	3.2e-7	63.1	hypothetical protein SOVF_0413...	[more]

BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QWA1_SPIOL	6.1e-29	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QUL8_SPIOL	9.1e-25	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RQ55_SPIOL	2.3e-7	63.1	Uncharacterized protein (Fragm...	[more]

BLAST of Spo03116.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo03116.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043090	amino acid import
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0009651	response to salt stress
biological_process	GO:0007165	signal transduction
biological_process	GO:0042908	xenobiotic transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05627	0.67	Barchart \| Table
Spo01809	0.66	Barchart \| Table
Spo26305	0.66	Barchart \| Table
Spo02665	0.65	Barchart \| Table
Spo24287	0.65	Barchart \| Table
Spo26789	0.65	Barchart \| Table