Spo03123 (gene)

Overview
NameSpo03123
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPre-mRNA branch site p14-like protein
LocationSpoScf_04511 : 3466 .. 4708 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGGTGTTTCTACTAAAGATAAGTGATGTTTTTTTTTTTTGGGTTTTAGGGTTTGTGTGGGGGATTATGTAAAATGTGGTTGGTTTTTAAGGTTTTGTATTTTCCGATGATCGACACTGTTACTACTTAATATCTTAGTGTTAATTGTTGATTACCCTATGAAGTTTAGTTTGAGTTCTTATTGCTCTGGAATTGAATTTTTGTGAAGTACTGTATTAGTTTGTGTGATCTTGTTGGATTAAATAAGCTTTTTTTCTTGATTCTTTGAAAGAAGATACTTGTGACATTATAATCTAAATATTGACTACAGCTAAAGTCAAGGATGAATTTGTTGAGGAACATTAATGAGGATAAGAAAGAAGAACTATTATTCTTCAATGAAAATTCCCCTGTAGTTTGCGTTTGCTTTTGCTATTTGTTATTGTACATGATGATTTTTAGCAGAATTTTTTGTGTCATCCCTGCTTTGGGGCTCATCTGTTGTATTGTACTCGTATGTGGTTAGGTTAGGTTAGGTTTTGTGTAGTTGGACGGACTATTGTACATTTGTACTTCAATAGCTGATTTGAAAGTTTTATTTCTCAATCGTGTTTCTGGTTTTAATTGCTTAGGTTTGTGCTGCTGCAAGTTTGTCTAGGTTGTATAATAGATGGATACATGTCTGGTGTTATTTTTTGGGTTAACTTCTTATTTTAAATTAAGTTATGAAGAAGCAGAAGTAACTAAGAGAGGTATGGATTCATTGTGGTACAGTAGGTGTTTGAATGGTTGTGTTACACGGGTATGCAGTATGCTATATTAAGGATGCCCCACTTCATTTGTTTTATATCTTCATTTTCCCTCATCCAGGATACTCACCATCCTCGATGGAAGGGTACATGCTATGTGAGGAAAATG

mRNA sequence

ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGAAGCAGAAGTAACTAAGAGAGGTATGGATTCATTGTGGTACAGTAGGTGTTTGAATGGTTGTGTTACACGGGATACTCACCATCCTCGATGGAAGGGTACATGCTATGTGAGGAAAATG

Coding sequence (CDS)

ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGAAGCAGAAGTAACTAAGAGAGGTATGGATTCATTGTGGTACAGTAGGTGTTTGAATGGTTGTGTTACACGGGATACTCACCATCCTCGATGGAAGGGTACATGCTATGTGAGGAAAATG

Protein sequence

MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYEAEVTKRGMDSLWYSRCLNGCVTRDTHHPRWKGTCYVRKM
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03123.1Spo03123.1mRNA


Homology
[Close]
BLAST of Spo03123.1 vs. NCBI nr
Match: gi|902212881|gb|KNA17115.1| (hypothetical protein SOVF_083110 [Spinacia oleracea])

HSP 1 Score: 233.0 bits (593), Expect = 3.500e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 116
[Close]
BLAST of Spo03123.1 vs. NCBI nr
Match: gi|731330951|ref|XP_010676406.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 232.6 bits (592), Expect = 4.500e-58
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK+DFKKKEEEITKLQEKY
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKVDFKKKEEEITKLQEKY 116
[Close]
BLAST of Spo03123.1 vs. NCBI nr
Match: gi|224059684|ref|XP_002299969.1| (Pre-mRNA branch site p14-like family protein [Populus trichocarpa])

HSP 1 Score: 218.8 bits (556), Expect = 6.800e-54
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 4   TISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 63

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK D KKKEEEI K+QEKY
Sbjct: 64  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEEIAKMQEKY 118
[Close]
BLAST of Spo03123.1 vs. NCBI nr
Match: gi|976925578|gb|KVI09479.1| (hypothetical protein Ccrd_012135 [Cynara cardunculus var. scolymus])

HSP 1 Score: 218.0 bits (554), Expect = 1.200e-53
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 3   TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KK D KKKEEEITKLQEKY
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. NCBI nr
Match: gi|661879483|emb|CDP16835.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 218.0 bits (554), Expect = 1.200e-53
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 3   TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KK D KKKEEEITKLQEKY
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCB9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083110 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.400e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 116
[Close]
BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIU7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017830 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.200e-58
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 

		  

Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK+DFKKKEEEITKLQEKY
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKVDFKKKEEEITKLQEKY 116
[Close]
BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Match: B9GG60_POPTR (Pre-mRNA branch site p14-like family protein OS=Populus trichocarpa GN=POPTR_0001s28000g PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.700e-54
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 4   TISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 63

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK D KKKEEEI K+QEKY
Sbjct: 64  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEEIAKMQEKY 118
[Close]
BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Match: A0A068V7T1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019374001 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.100e-54
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 3   TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KK D KKKEEEITKLQEKY
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Match: A0A103YI03_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012135 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.100e-54
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 3   TISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KK D KKKEEEITKLQEKY
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEEEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.300e-52
Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK+NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+G +K T+GTAFV
Sbjct: 3   TISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKM+KK D KK E+EITKLQEKY
Sbjct: 63  VYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.600e-41
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 1 

		  

Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++AN RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIRVG   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K+D KKKEE++  L+EKY
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY 117
[Close]
BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.600e-41
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 1 

		  

Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++AN RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIRVG   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K+D KKKEE++  L+EKY
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY 117
[Close]
BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.300e-40
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 1 

		  

Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++ + RLPPEVNR+LYVRNLP+ ITS+EMYDIFGK+GAIRQIRVG   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K++D  KK+EE+  ++ KY
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKY 113
[Close]
BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.700e-36
Identity = 68/106 (64.15%), Postives = 91/106 (85.85%), Query Frame = 1 

		  

Query: 11  RLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAK 70
           +LPPEVNR+LY++NLP+ IT+EEMY+IFGK+GA+RQIRVG   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 71  TAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           TA +HLSG+NV+NRYL+VLYYQ  K  K++D +K   ++  ++E+Y
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERY 117
[Close]
BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Match: AT5G12190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 204.5 bits (519), Expect = 4.700e-53
Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 1 

		  

Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK+NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+G +K T+GTAFV
Sbjct: 3   TISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKY 117
           VYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKM+KK D KK E+EITKLQEKY
Sbjct: 63  VYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKY 117
[Close]
BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Match: AT2G14870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.5 bits (280), Expect = 2.400e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1 

		  

Query: 7  KANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDI 66
          K N RLPPEV R+LY+ NLPF+ITSE+ YD+FG+Y  IRQ+R+G  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 67 YDAKTAVDHL 77
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78
[Close]
BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.600e-7
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 1 

		  

Query: 17 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHL 76
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV +ED  DA  A+   
Sbjct: 6  SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65

Query: 77 SGFNVANRYLIV 89
           G++    +L V
Sbjct: 66 DGYDFDGHHLRV 77
[Close]
BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Match: AT5G07290.1 (MEI2-like 4)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-6
Identity = 24/67 (35.82%), Postives = 43/67 (64.18%), Query Frame = 1 

		  

Query: 20  LYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHLSGF 79
           L+V NL  +I++EE++ IF  YG IR++R   +++++   ++ + D+  AK A+  L+G 
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ--VYIEFFDVRKAKVALQGLNGL 356

Query: 80  NVANRYL 87
            VA R L
Sbjct: 357 EVAGRQL 361
[Close]
BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-6
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1 

		  

Query: 17 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHL 76
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV ++D  DA+ A+   
Sbjct: 6  SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65

Query: 77 SGFN 81
           G++
Sbjct: 66 DGYD 69
The following BLAST results are available for this feature:
BLAST of Spo03123.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902212881|gb|KNA17115.1|3.5e-58100.hypothetical protein SOVF_0831... [more]
gi|731330951|ref|XP_010676406.1|4.5e-5899.1PREDICTED: splicing factor 3B ... [more]
gi|224059684|ref|XP_002299969.1|6.8e-5493.0Pre-mRNA branch site p14-like ... [more]
gi|976925578|gb|KVI09479.1|1.2e-5393.9hypothetical protein Ccrd_0121... [more]
gi|661879483|emb|CDP16835.1|1.2e-5393.9unnamed protein product [Coffe... [more]
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BLAST of Spo03123.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCB9_SPIOL2.4e-58100.Uncharacterized protein OS=Spi... [more]
A0A0J8BIU7_BETVU3.2e-5899.1Uncharacterized protein OS=Bet... [more]
B9GG60_POPTR4.7e-5493.0Pre-mRNA branch site p14-like ... [more]
A0A068V7T1_COFCA8.1e-5493.9Uncharacterized protein OS=Cof... [more]
A0A103YI03_CYNCS8.1e-5493.9Uncharacterized protein OS=Cyn... [more]
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BLAST of Spo03123.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3B6_ARATH8.3e-5287.8Splicing factor 3B subunit 6-l... [more]
SF3B6_MOUSE8.6e-4170.2Splicing factor 3B subunit 6 O... [more]
SF3B6_HUMAN8.6e-4170.2Splicing factor 3B subunit 6 O... [more]
SF3B6_DROME4.3e-4069.3Splicing factor 3B subunit 6-l... [more]
SF3B6_CAEEL1.7e-3664.1Splicing factor 3B subunit 6-l... [more]
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BLAST of Spo03123.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G12190.14.7e-5387.8RNA-binding (RRM/RBD/RNP motif... [more]
AT2G14870.12.4e-2571.4RNA-binding (RRM/RBD/RNP motif... [more]
AT4G02430.26.6e-737.5RNA-binding (RRM/RBD/RNP motif... [more]
AT5G07290.11.9e-635.8MEI2-like 4[more]
AT1G02840.11.9e-637.5RNA-binding (RRM/RBD/RNP motif... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..86
score: 1.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..89
score: 2.0
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 18..93
score: 1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 17..101
score: 3.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 6..99
score: 2.01
NoneNo IPR availableunknownCoilCoilcoord: 95..122
scor
NoneNo IPR availablePANTHERPTHR12785FAMILY NOT NAMEDcoord: 3..116
score: 5.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo052040.99Barchart | Table
Spo205210.66Barchart | Table