Spo03257 (gene)

Overview
NameSpo03257
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01127 : 40290 .. 41321 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTTTTTTTTTTTAAAAGAATTTTCGTAAAACAAAACCCTGCACTTCTCTCCTCTACACCTCCCCACTTCTTCCCTACCACTACCCACGCCAAACTCTCACCACCGTCGTTGTTGCCATCGTCTCTCCTCCCGTGTCCCATCTTATCTCCTCTGATGTGTGCCATCTTATCTTCTCTCCTCTCCTATCTTCTCTCCTCTCCAGCAGCCAAGTCGCCGATTTGTGTACCGCTTAATACCTCCATCGCCTCCTCTCCTGGGGCAAAGAATCGCGCTCACCGCCACTATCGTCGACTTGCCTCCTACTGGAAACCGCTAAGAGGTTAGCTCATACACCGTTCTGCTGGAAAATCAAATTTCTTTTTGGCTCAAAGGTTAGGTTTTCTAATGTAATCGAATTGAATCGTTTCTTTTTCGTATGTTAATGTGTTTATAGAATTATTTTATAAGAATTGATGATTAGATGTTGGTAGATTTTACTGTAATTGATGCAATATGAATTAATTTCGAGGTTAATTAGGGTTCAAGGACGATTCTAGGACAAAAAATTCAGAAAGATGAATTTGGTGTTCTAAAATACTATAATCTGATTTGAAGAGCTTATTGAATGAAAGAGAGTGTAATCTGCTTTGTGAAATGCGAATTCAGAGAGGCTATGGTTTGGGTGTTATATCCTTCCTGCTGGTAATGGTAGTTTTAATGGTAGGAGCAGGACTAATTAATTTGGTTCTGGTGATGGCAATCAAGTAGATGTGCATACATCATCCTGGCTGTTTACATAATTACATGCTTTTCTGGAAACAACGATGATGATGATTTATTGATTATGCACACATTGTTCGGGCCTTAGTTGAAGTGTTCTCTGGTTGTTTCACATGAAAAATTGGCAATAGTTGCTAAGATGAAACATTGGGGCTAATAACCGAGCCACTTTTGACTTTTTTGTTTTGTTTTATTTTTACTGCTAATTTCCTCCCTCATTCTTTGTATTCAGAGCTTGCAAGTCCCATTCTCGGATACCAAGTGTTGTGA

mRNA sequence

AAACTTTTTTTTTTTAAAAGAATTTTCGTAAAACAAAACCCTGCACTTCTCTCCTCTACACCTCCCCACTTCTTCCCTACCACTACCCACGCCAAACTCTCACCACCGTCGTTGTTGCCATCGTCTCTCCTCCCGTGTCCCATCTTATCTCCTCTGATGTGTGCCATCTTATCTTCTCTCCTCTCCTATCTTCTCTCCTCTCCAGCAGCCAAGTCGCCGATTTGTGTACCGCTTAATACCTCCATCGCCTCCTCTCCTGGGGCAAAGAATCGCGCTCACCGCCACTATCGTCGACTTGCCTCCTACTGGAAACCGCTAAGAGAGCTTGCAAGTCCCATTCTCGGATACCAAGTGTTGTGA

Coding sequence (CDS)

ATGTGTGCCATCTTATCTTCTCTCCTCTCCTATCTTCTCTCCTCTCCAGCAGCCAAGTCGCCGATTTGTGTACCGCTTAATACCTCCATCGCCTCCTCTCCTGGGGCAAAGAATCGCGCTCACCGCCACTATCGTCGACTTGCCTCCTACTGGAAACCGCTAAGAGAGCTTGCAAGTCCCATTCTCGGATACCAAGTGTTGTGA

Protein sequence

MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLRELASPILGYQVL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03257.1Spo03257.1mRNA


Homology
[Close]
BLAST of Spo03257.1 vs. NCBI nr
Match: gi|902205229|gb|KNA15121.1| (hypothetical protein SOVF_101010 [Spinacia oleracea])

HSP 1 Score: 109.4 bits (272), Expect = 2.500e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR 56
          MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR
Sbjct: 1  MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR 55
[Close]
BLAST of Spo03257.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6J1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101010 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.700e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR 56
          MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR
Sbjct: 1  MCAILSSLLSYLLSSPAAKSPICVPLNTSIASSPGAKNRAHRHYRRLASYWKPLR 55
The following BLAST results are available for this feature:
BLAST of Spo03257.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902205229|gb|KNA15121.1|2.5e-21100.hypothetical protein SOVF_1010... [more]
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BLAST of Spo03257.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R6J1_SPIOL1.7e-21100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03257.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03257.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo270640.68Barchart | Table