Spo03272 (gene)

Overview
NameSpo03272
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 43909783 .. 43915733 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAAGTTAAGGCGGTGTCCAGAGAGGTGTCGTTGATTATGGGAAAAGAGTTGCAGATCTAGGAGATGGTGATACTCTCTATTTTTGAATGTCTTTCCGTTTGGAGCGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTCCTGATTCTGATTTAATTTTCTCAATCTTCTTTTCATTTTCCAATTTCAATTAGTTGATTAATATGAGTAATTTTGTTTTTTTAAAATCTTGCTCGAAACTGGGGTAATTTTTGGCCTATCGCAATTGAGACTTTATTTGTTAGATCATAAAGGAACTCATTGGGGTTAAAATGGAAGGGAGTAATAATCTGATGAAGAACTCCTTAGTAGTTGTCTTGGTAAATGTCGAATGTGTGTTGTCGGCCTCTTGCTTGATTAGAAAAGATATTGTTATTTAATAAGGAACTAAATGATGACTTGCTTTACGAAAGGCTACCGTCTATAACAAACTTCCAATCATATATTAAAAGTGTTGGTTTGAATTGCAGTTGTTTTGCTTCTCTAAAATATTGAACTTTGGTGTTTTTCTTAATTCAATTAGATATTAATGTTGTTCTTTTAGAGATAGGGTTTTCTTATATATCTTCTTCTAATTCTATTGTAAATGGTATATTTTTAGGCTATATTTATAAGGTTTGATGACTTGATATGCTGTAAATTGATGGTATGGTTGGTAGAATAAGTTCCTGTATCCAGTGGATTTTGAATCAGTAAGTAGATAGCTTAATTTCTTGTTTATTTGTAAATTTATGTTTTAGTTTGTTTGTTGATACTTTAAAATAAAATACATTTCATGATTAGGTTTTGATCCCGTTGAAAGAGTGGTTATTCAACCAAAAGGAATATTGTTTGTTAGATGAGCACCTTATTAGCTGCTTGTATTACTCTATATTGTGAAATAACACATGGTTATTGCTTATAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTGTGTTATCTCTCCACTCTTGATGCAATTTCTTTTTAGCTTACATAAGATACATTTTTGTGTTACTTTCTGATGTTCGCGGACTTTTTCAATCTGTCTTATTATCGTCATTTTGTGGTAGACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAAACGGGTATGGTGTTTGTATTACTTTTGAATTACTCATTAGTTTACTCTGAAATTATAAGCTTTCGCAACCATCTTCCTTGGGAGCTACACTACTTTCATTTGTTTGCCTTAGCAATGATAGGGCGTTTTTCCATCGTTGAAAAGAAAATCACCTCACAAAACAAAATTTATAAAACACCTAACTAACCGACTATATTGACTATAGCGGCAAGCATAGGGATCGTCCCATAGGAATGTATATGTTTGACTATTCAATCTATGCGTTCACAAGCTAGTTCGGATGGAAAATGATTTTTTTTGTATTAATCTAATGAAAGCTAGAAATGCAAACAAATAAAGAAATTCAAGAGGATTCGGGAATCGGCAATGGAAATCGAATCAAAGGAAGAACAAGGTCAAGACATTCATGAATATGCAACGACTTAGCACATAGGGAAATAGAATTGAATGACGTGTGCGCCACCTCTCGGATGGAGCACGCGAAGCGTCTAATCTATGGAAGAGCTTTCGCCTAATCATAGACTAAACAACTTGCATATAATAGGAACCACTATTCACTTGCACACAAATTAGCCTCACAATGTCTTGCCAAACCTAGCCTATGCATTCCAATCTAATCCAATCAAATAGAATTTGCAACTACTACTCAATTATTCATGGATGTCCTATCACTAAATCATGTTTAATTACACCCAATCAATCATGAATTTCCCCAAAATTCCCCAAAATTCAATCCCAAGGCTTCAACCCCAAGGCTTCAACCCTAACCTCTAGACTAAAACTACTCAATTAGCATGATTAACATCAACATTAAACTAACATTAATCCTAATCATGAAACTAATTGAATAAGAAACTAATGGTATCAAGAAAATTCAGAAAATTCAAATATAAAAAATTGGGGGAAAATTCAAAATATGAAACTAATTCTAAAATTCAAGCATGAAATCAAAGCATAAACGAAATTAATGAAGCATTTAAGAATTGAAAGAACAAATCAAAAGAAAAATTAGAATTATACCTTGAATTGAAGAATTTGCATCAAACCTTGAAGAACAAAATGAAGAACAAAGCTCAAAATAAAGAGAAAGAAATCTGAAAATTAATGATTGAATTCAACTAAGAATCAAGAATTTGAAGCAATGAATCCTAATCCTAATCTCTAATCTAAGCCCTAAACTAATTCTCTCTCTAAAAATCTAATTCTAAAATCTGAAAATGAAAAAAAACTAAAAACTAACTACGTGAAACTAAGTCGCGATTTCTCGTATTTAAAGTGCTCCGCCCAGCTGTGCGACCACACGAGGAAGGCTGTGCGCTCGCACCAAACTCCACTGATTTCCTGCATTGATTTTGGTAATTCGTGCGCACACACGAGTAGAGCAGTGTGCTCGCACAGGATCAGCTCGACCGCACGTCTGACTAGCTCGATCGCACAACATAGTAGATGCTGGTTCTGCGCTATTCTGCTGCACTACTTGGCCGTTGTTCTGCTATGCTCTTGCTGCACTGCTTGGCTGCTGATCTGCTGTGCTATATGGCTGCTGCCAAGGGAGTGCAAGAGGGCTTGAGGTGAGCACAAGACATGCTGCAAGTGTGCTCGTGCATTGCTGTGAGTGCACAGCTATGGTTTCTCGAGTGCTGCTGAAGGTGCACGAGTGTAGCTGTGGGGCTGCTTTACCTTGGCTCTTGCGTGCACTTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCATCGTATGCAAGCTAGTGCCTCGCCTACCACATTCAATAAAATCATAAATCATATTATTAAAATCGTAAATCAAAATATTTCGTTTAACTTTTTTGCAAATCGTAAAACATACAACTCGTCGACAAGCATGATGACGCAATATTAACACGTTAATACTCAAAATGACTCTTACGCAATGAGAATGCGCATAAAAGGCATATTTAGAGCAAAAACGACTAAAATATACGCAAGGCGAGAAAATGTTACGATAAATGCAAAAATGAAATAAACGAACTAAAAACGATAAAACTAAGCGAAAATAATAATAAAATGCTAATGAAATGAACTAAAATCCTAAGCTAAGAGTGACATAAATGTCGCTGATCAAGCAATCACATGCATACATAGTTACATGAGCTTCATAGGTTTCCATTGTTATTGCTTCTAGAATATTGAACAACTTCTTGAAATTTGGAATGTCGTTTTTTATTGCAAAAGTATATACAAATGTCCACCCATACTTTTAAGTTACATGAACTCGTATAGGGGACTGGTTGTTTCAGTCGAATTACGGAGATGTTGAAGTGGCCGAGGCCACTTCCTTTAGAAGATGAACGAGATCGCCTACTTCAAGAGGTACATCTCACAACAAGGATTGCATCTGTTATGTATTATTTGTTGTCGTTATGTAACTTTATGATTGTCTCAATAGTCTAACGGTCTATTGAATTCCTGAGTGCTTTGCTTATCTCCTTAACGATTTGCTTATCTTCTTTTACTGTAATATTTTTAATAGGACATATATATTCTGTATGATTTTGTCTATTTATATTATTTAGATGCTTTTCATTGATTCAGGTGCCCCATGCTTTTTCTAGTTCTGGTGCAATTATATGGACCGCCTAATCTTGAATTCATTGATTGCTTTTTGAGGTAATCGTAAAAAACTCTCATTTGCTGTTGTACATTCCTGTTTAAACTATGAAAAGCTCTCATTTTCATTGTCCTTCGCCTTTTCCAGTTCAAAATTGCTGCTAGCGCATTGGAACTTTGGAAGAGGCTAATCTAGAAAACAAGTTTGTAGAGCCAAGTGTCAGACCCTGTAGACGCCTACTTTTGTCCCCATTCCCGAAAGAGAAGGTTCGATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACTACCGTAAAAGCTAGTTATTAAAAGTGGCAAAATCATAAAAGATAGAAACCTGTCAGAATTAGGTGTTGCACTCCAACATAAATCCTAAAAGAGATATAATTTACAAAGGAATTCTATTCCTAGTATAATTCGAAAATAAGAGTTACGTATTAATTAAATTCCTAACGAACCTAGAGTTCGTAACGGGCCCAGACGCATTCCGTCATAATACGCACTAAAAGACTCGGATAAATCTCCCAAAAAGGTCCGTGTTCTAAGAGTCCAAATCGAACAAGAACTCGGCCCAGATCCAAGTGTTGAAAGTGCCTAGGGCCGTTTTATCTCCGGATTCTTTTTGGATTCGTATCTTAAAATCTATTTTTCCACACACTCTTTTCATATAAATACAGCCTAAAACCGACGTGAAAATAACACACAATTCCATAATCGACCCACTATAACACACACGATACAAATTGGCAGCAGAGCAGCGGAAACAAATCAACTTTTCATGAATCTGATGCTGATGTTATTAAATCAGGGGGTTGTTTTTAAACTTTTAAACTGATGCTGCTGCAGTTTACACTCCAGTTTTTTTCTTCTCCAACATAATGCAGAATCCAACACCTCTAAACTTCCTCTCGTTATAAGCTTATTTCTTTAGAGTTAATTAAAAGATTAGAACTTTAACATTTGGTCTTAGTTTTTTAAGCTTCTCATGTATGATATTAATTTTTTCATGGTTATTTATGTTGTAGAAGGAACTTCAGAAAATAATTGAAGAACCAACACTTTTTCATGTCTTAGGTAGCTTTTCTTCTTCTATATCCTTTTTGGTTGTATATTCACTTTCCCATCCAATGATATTTAACTTTTTTTCTTTATCTTGGTGGCACAAAAGGTGTTTAAGTCGAAGTCTCGTAATTAATTTGTGGACTTGTGGGTTTAGGGAGGTACTTCAATCTAAGTTTAATGAAGAAAACAAACAAAATCAGGTGCTTACCAATCGCGTGGATACGGTACATGAAGAAAACAATGCACTTAAGAGCCGTATGAGTTCAGTTGAAGATGAGCTTAAATCATTTAAAGACGTGTTACTTTGAGGCTCCAAGAGAGGACATTTCAACTATTTAGATTTTTATTTTGTTATTTTTGATTGAACATGAGTTTTATATTTATTAGTTTTTTTAGAATTTAAAGACAACGGGATGTGATTGTTGGGTTCATATAACTTCAAGTTCTATTGTCAAATATTTTTTGAGTGATGAAATTTTCATTTGTTAAAATTGATTTATGGTTTTGTATATTGTTTCATAGTGAAAATTTAGGATTTTTGAAGAATGTAAATAATGTTATTATGATTGCAATATTAACTACATAATATTTCGG

mRNA sequence

ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAACGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAAACGGGTGCCCCATGCTTTTTCTAGTTCTGGTGCAATTATATGGACCGCCTAATCTTGAATTCATTGATTGCTTTTTGAGTTCAAAATTGCTGCTAGCGCATTGGAACTTTGGAAGAGGCTAATCTAGAAAACAAGTTTGTAGAGCCAAGTGTCAGACCCTGTAGACGCCTACTTTTGTCCCCATTCCCGAAAGAGAAGGTTCGATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACTACCGTAAAAGCTAGTTATTAAAAGTGGCAAAATCATAAAAGATAGAAACCTGTCAGAATTAGGTGTTGCACTCCAACATAAATCCTAAAAGAGATATAATTTACAAAGGAATTCTATTCCTAGTATAATTCGAAAATAAGAGTTACGTATTAATTAAATTCCTAACGAACCTAGAGTTCGTAACGGGCCCAGACGCATTCCGTCATAATACGCACTAAAAGACTCGGATAAATCTCCCAAAAAGGTCCGTGTTCTAAGAGTCCAAATCGAACAAGAACTCGGCCCAGATCCAAGTGTTGAAAGTGCCTAGGGCCGTTTTATCTCCGGATTCTTTTTGGATTCGTATCTTAAAATCTATTTTTCCACACACTCTTTTCATATAAATACAGCCTAAAACCGACGTGAAAATAACACACAATTCCATAATCGACCCACTATAACACACACGATACAAATTGGCAGCAGAGCAGCGGAAACAAATCAACTTTTCATGAATCTGATGCTGATGTTATTAAATCAGGGGGTTGTTTTTAAACTTTTAAACTGATGCTGCTGCAGTTTACACTCCAGTTTTTTTCTTCTCCAACATAATGCAGAATCCAACACCTCTAAACTTCCTCTCGTTATAAGCTTATTTCTTTAGAGTTAATTAAAAGATTAGAACTTTAACATTTGGTCTTAGTTTTTTAAGCTTCTCATGTATGATATTAATTTTTTCATGGTTATTTATGTTGTAGAAGGAACTTCAGAAAATAATTGAAGAACCAACACTTTTTCATGTCTTAGGGAGGTACTTCAATCTAAGTTTAATGAAGAAAACAAACAAAATCAGGTGCTTACCAATCGCGTGGATACGGTACATGAAGAAAACAATGCACTTAAGAGCCGTATGAGTTCAGTTGAAGATGAGCTTAAATCATTTAAAGACGTGTTACTTTGAGGCTCCAAGAGAGGACATTTCAACTATTTAGATTTTTATTTTGTTATTTTTGATTGAACATGAGTTTTATATTTATTAGTTTTTTTAGAATTTAAAGACAACGGGATGTGATTGTTGGGTTCATATAACTTCAAGTTCTATTGTCAAATATTTTTTGAGTGATGAAATTTTCATTTGTTAAAATTGATTTATGGTTTTGTATATTGTTTCATAGTGAAAATTTAGGATTTTTGAAGAATGTAAATAATGTTATTATGATTGCAATATTAACTACATAATATTTCGG

Coding sequence (CDS)

ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAACGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAA

Protein sequence

MTQSPLKSSISSVPNYLLVSILFFLHFRSRSRRKILKNDQRGTAQILYISPFLKPFLFLAPTIKIEELILVRIMTFRLFRSSEIWNFEGFHLIIRLESILFPDAAISGSWFNCKAITLTLLDSMRTGVSLNALGSRWYEELKYDNLALGLSRVLEHDKSAFDADRLQN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03272.1Spo03272.1mRNA


Homology
[Close]
BLAST of Spo03272.1 vs. NCBI nr
Match: gi|902223550|gb|KNA19480.1| (hypothetical protein SOVF_061090 [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 6.700e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 139 EELKYDNLALGLSRVLEHDKSAFDADRLQN 169
           EELKYDNLALGLSRVLEHDKSAFDADRLQN
Sbjct: 8   EELKYDNLALGLSRVLEHDKSAFDADRLQN 37
[Close]
BLAST of Spo03272.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJ23_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_061090 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.700e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 139 EELKYDNLALGLSRVLEHDKSAFDADRLQN 169
           EELKYDNLALGLSRVLEHDKSAFDADRLQN
Sbjct: 8   EELKYDNLALGLSRVLEHDKSAFDADRLQN 37
The following BLAST results are available for this feature:
BLAST of Spo03272.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902223550|gb|KNA19480.1|6.7e-7100.hypothetical protein SOVF_0610... [more]
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BLAST of Spo03272.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RJ23_SPIOL4.7e-7100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03272.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03272.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007267 cell-cell signaling
biological_process GO:0051302 regulation of cell division
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0007276 gamete generation
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009561 megagametogenesis
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005819 spindle
molecular_function GO:0016874 ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
RNA-Seq Expression