Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAGGGTTTGCTAGGCTGCTAGCTCCGATACCATGACAAGTTTATTAGGGTTATGATTTTCCTTGAGTTTGTATTGCATTGGAATTGGTATTATATACTACAGCATTAGCTACGGGCTTTCCTAGACTTAGTATTACTAAATACAAGCTAAGCCTATTAAAGCCCAACTACAAAATACACAATATATATATATATATATATATATAAGCCTTAATATTTTCCCACTTGTTACCCCCACCATCACATGCTCACCAAAGTTTCTTAACTACCATGCAAATATTAAGCGTAAAGATCATTTAGGAACGGAGGTAGTATATGTTTGTATTACATGCTTATGTCTCTAACAAATGAAAAAGAATCTTTGCTTTGTGCATATGCTAATAGTATGATCATCTGATATTTACATGGTTTCGGGTAGAAAAAATCTGTAGATGTAAGATTGATTGTTTTCTATTGGGTATTATTGCAGGAAAATCAGATATGAAGCTCTACAAAGTGAAGCAGGAAAGAATTTGTTAAGGAGATCAGGAAGAGCTCCTGATGATATATCAAGTGTTGTCCTTGTTGAAAAAGAGAGGTACGAGTTTGTTTTGATAATATACGAGTTTCTTGGTTTATTGATCTAGAGTCGAACAAGAAAAAAAACTCACTGCTCCATGCTCTAGAGTCCGTTATCTTTTGGGAAGCAATCAGTGATTATTAGTGACATTTGTTTTTCTTTGGTACCCACTGATATGTAATACACATAATTCACAAATTTCTTGATTTTTCCTGTTTCCTACTGCATCTCATCAACTCACTGCACCACAGAAGACTGTGTGATCCTACTTAGTTGGATTTCCCTCTAAAACCAACTGTCTGTGCATGTTTCTGCAGATCTTACATCAAGTCTGAAGCTGTATTAAAGATCATGGAATACATAAATTTACCATTCCCACAGATGGCATTCTTCCTGAAACTTTTACCTTTGTGAGTAATTTAATATTTTGCTGTTTAAGAAATTATCCCATCTTTGCAGCTGGACAAGTCTCTAATTTGACCTTTTAACAATTTTTTCCTGTAACTACCACAGGCTCGTTCGTGATTTTGCATACGACAATTTAGCAAACAACCGTTACAACATTTTTGGTAAGTCAGAGTCGTGCGAGATTTATTTAGATCAGTGAATGTCATCAATTTCTTCCTTGAGAATTTCGTACATCTAATCCTGATACAT ATGATAGGGAAAATCAGATATGAAGCTCTACAAAGTGAAGCAGGAAAGAATTTGTTAAGGAGATCAGGAAGAGCTCCTGATGATATATCAAGTGTTGTCCTTGTTGAAAAAGAGAGATCTTACATCAAGTCTGAAGCTGTATTAAAGATCATGGAATACATAAATTTACCATTCCCACAGATGGCATTCTTCCTGAAACTTTTACCTTTGCTCGTTCGTGATTTTGCATACGACAATTTAGCAAACAACCGTTACAACATTTTTGGTAAGTCAGAGTCGTGCGAGATTTATTTAGATCAGTGAATGTCATCAATTTCTTCCTTGAGAATTTCGTACATCTAATCCTGATACAT ATGATAGGGAAAATCAGATATGAAGCTCTACAAAGTGAAGCAGGAAAGAATTTGTTAAGGAGATCAGGAAGAGCTCCTGATGATATATCAAGTGTTGTCCTTGTTGAAAAAGAGAGATCTTACATCAAGTCTGAAGCTGTATTAAAGATCATGGAATACATAAATTTACCATTCCCACAGATGGCATTCTTCCTGAAACTTTTACCTTTGCTCGTTCGTGATTTTGCATACGACAATTTAGCAAACAACCGTTACAACATTTTTGGTAAGTCAGAGTCGTGCGAGATTTATTTAGATCAGTGA MIGKIRYEALQSEAGKNLLRRSGRAPDDISSVVLVEKERSYIKSEAVLKIMEYINLPFPQMAFFLKLLPLLVRDFAYDNLANNRYNIFGKSESCEIYLDQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03302.1 vs. NCBI nr
Match: gi|902228833|gb|KNA21277.1| (hypothetical protein SOVF_044450 [Spinacia oleracea]) HSP 1 Score: 191.8 bits (486), Expect = 5.700e-46 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
BLAST of Spo03302.1 vs. NCBI nr
Match: gi|731359191|ref|XP_010691152.1| (PREDICTED: DCC family protein At1g52590, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 172.9 bits (437), Expect = 2.700e-40 Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
BLAST of Spo03302.1 vs. NCBI nr
Match: gi|802603672|ref|XP_012073206.1| (PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]) HSP 1 Score: 170.2 bits (430), Expect = 1.800e-39 Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of Spo03302.1 vs. NCBI nr
Match: gi|1000969557|ref|XP_015573792.1| (PREDICTED: DCC family protein At1g52590, chloroplastic [Ricinus communis]) HSP 1 Score: 168.3 bits (425), Expect = 6.800e-39 Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 1
BLAST of Spo03302.1 vs. NCBI nr
Match: gi|460380539|ref|XP_004236013.1| (PREDICTED: DCC family protein At1g52590, chloroplastic isoform X2 [Solanum lycopersicum]) HSP 1 Score: 166.8 bits (421), Expect = 2.000e-38 Identity = 80/93 (86.02%), Postives = 90/93 (96.77%), Query Frame = 1
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044450 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 4.000e-46 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BH14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219690 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 1.900e-40 Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Match: E6NUB8_JATCU (JHL06P13.8 protein OS=Jatropha curcas GN=JHL06P13.8 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 1.200e-39 Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HDK9_SOLCH (Putative DCC family protein, chloroplastic-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 4.700e-39 Identity = 80/96 (83.33%), Postives = 92/96 (95.83%), Query Frame = 1
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Match: K4BLF9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 1.400e-38 Identity = 80/93 (86.02%), Postives = 90/93 (96.77%), Query Frame = 1
BLAST of Spo03302.1 vs. ExPASy Swiss-Prot
Match: Y1259_ARATH (DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=2 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 3.500e-35 Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 1
BLAST of Spo03302.1 vs. ExPASy Swiss-Prot
Match: YUXK_BACSU (Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.000e-10 Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1
BLAST of Spo03302.1 vs. TAIR (Arabidopsis)
Match: AT1G52590.1 (Putative thiol-disulphide oxidoreductase DCC) HSP 1 Score: 148.7 bits (374), Expect = 2.000e-36 Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 1
BLAST of Spo03302.1 vs. TAIR (Arabidopsis)
Match: AT1G24095.1 (Putative thiol-disulphide oxidoreductase DCC) HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8 Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03302.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03302.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03302.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo03302.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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