Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAATAAGGTGGTCGAGCCCGCTAATACGGTGAGTTATGCAGTTAAGGTGAGCCTTGAGGTCCGGGAGGAGCTGGAGAGAGCGAGGTCGAGGCACAATTCAGCGGTCACGTCGCTGCCCACCACTTGGTCGAAACCGGATGTTGGTTGGACGAAAGTGAATGTGGATGCGGGTGTTCTGGGAGATACTGGCACAGGTATTGGCATGGTGATGAGGGACAGTGAAGGAGTGATTGTGGCTTGCTCTTCATGGCAGGGTACGGAGAAGTGGGAAACTAGGGTGGCGGAAGCCAAGGCCGTGGCTATGGGCCTGCAGCTAGCTCAGGAGATGGGAGTAAGGGATGTGGAAATGGAAAGTGATTGTCTGATGGTAATACAACCGTTGCGTGGGGGAAATGATAAATCCAAGGAAGAATTTCACTTCTTCCAAGGAAATCACCTTTAA ATGGAGAATAAGGTGGTCGAGCCCGCTAATACGGTGAGTTATGCAGTTAAGGTGAGCCTTGAGGTCCGGGAGGAGCTGGAGAGAGCGAGGTCGAGGCACAATTCAGCGGTCACGTCGCTGCCCACCACTTGGTCGAAACCGGATGTTGGTTGGACGAAAGTGAATGTGGATGCGGGTGTTCTGGGAGATACTGGCACAGGTATTGGCATGGTGATGAGGGACAGTGAAGGAGTGATTGTGGCTTGCTCTTCATGGCAGGGTACGGAGAAGTGGGAAACTAGGGTGGCGGAAGCCAAGGCCGTGGCTATGGGCCTGCAGCTAGCTCAGGAGATGGGAGTAAGGGATGTGGAAATGGAAAGTGATTGTCTGATGGTAATACAACCGTTGCGTGGGGGAAATGATAAATCCAAGGAAGAATTTCACTTCTTCCAAGGAAATCACCTTTAA ATGGAGAATAAGGTGGTCGAGCCCGCTAATACGGTGAGTTATGCAGTTAAGGTGAGCCTTGAGGTCCGGGAGGAGCTGGAGAGAGCGAGGTCGAGGCACAATTCAGCGGTCACGTCGCTGCCCACCACTTGGTCGAAACCGGATGTTGGTTGGACGAAAGTGAATGTGGATGCGGGTGTTCTGGGAGATACTGGCACAGGTATTGGCATGGTGATGAGGGACAGTGAAGGAGTGATTGTGGCTTGCTCTTCATGGCAGGGTACGGAGAAGTGGGAAACTAGGGTGGCGGAAGCCAAGGCCGTGGCTATGGGCCTGCAGCTAGCTCAGGAGATGGGAGTAAGGGATGTGGAAATGGAAAGTGATTGTCTGATGGTAATACAACCGTTGCGTGGGGGAAATGATAAATCCAAGGAAGAATTTCACTTCTTCCAAGGAAATCACCTTTAA MENKVVEPANTVSYAVKVSLEVREELERARSRHNSAVTSLPTTWSKPDVGWTKVNVDAGVLGDTGTGIGMVMRDSEGVIVACSSWQGTEKWETRVAEAKAVAMGLQLAQEMGVRDVEMESDCLMVIQPLRGGNDKSKEEFHFFQGNHL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03383.1 vs. NCBI nr
Match: gi|731358317|ref|XP_010690674.1| (PREDICTED: uncharacterized protein LOC104904177 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 117.1 bits (292), Expect = 2.600e-23 Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
BLAST of Spo03383.1 vs. NCBI nr
Match: gi|731319132|ref|XP_010670097.1| (PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 103.2 bits (256), Expect = 3.900e-19 Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1
BLAST of Spo03383.1 vs. NCBI nr
Match: gi|731349781|ref|XP_010686173.1| (PREDICTED: uncharacterized protein LOC104900455 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 101.7 bits (252), Expect = 1.100e-18 Identity = 60/138 (43.48%), Postives = 80/138 (57.97%), Query Frame = 1
BLAST of Spo03383.1 vs. NCBI nr
Match: gi|731342264|ref|XP_010682311.1| (PREDICTED: uncharacterized protein LOC104897185 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 100.9 bits (250), Expect = 2.000e-18 Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1
BLAST of Spo03383.1 vs. NCBI nr
Match: gi|731349717|ref|XP_010686140.1| (PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 97.4 bits (241), Expect = 2.200e-17 Identity = 53/132 (40.15%), Postives = 82/132 (62.12%), Query Frame = 1
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAP7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_206000 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.000e-11 Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Match: F4NCI4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.400e-9 Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8C1_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_208330 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.300e-8 Identity = 39/128 (30.47%), Postives = 62/128 (48.44%), Query Frame = 1
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Match: D9ZHD0_HYPPE (Retrotransposon protein OS=Hypericum perforatum GN=RT3 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.700e-8 Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = 1
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Match: A2Q2Z8_MEDTR (Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC153128g17v2 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.400e-8 Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03383.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03383.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03383.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo03383.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|