Spo03406 (gene)

Overview
NameSpo03406
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTranscription elongation factor (TFIIS) family protein
LocationSpoScf_00442 : 349889 .. 353830 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCAAAAGAGGAGGGATATGGAAGACCTAAAATCCCAATAAATAAATAATTCCCCTTTTTATTTTATTTTTATTTGTACAATCTAACAAAAATCCAAACAGCACCCGGAATTCTGTCCTTTGGGCGCTCACTGGCACCCACACACAGACACCCAATTCCTACAAGAACTAGAGAGAGAAAGTAGAGAGAGAAACCAAAAAAATAAAAAAGGAATTTAAAACTCTTCCATCTTCTTCTTCCTAACTTTGCTGCTGCTGCTTCTTCTTCTTGATTTTTCTGAGGTCACCGTATATTGTATTTCTTATATTGTATTAATTAATTACTCGTGTTATATTTCCTATCACAAATCACAATTCATTAGATTATGATACATATTCAATAATATTCATTATTACTTCTAATTCCAATTTTTTTTTAAAACCCAAAATTTGTCGAAATCCCAATACCCAATAACCCTTCAAAGGAGGAATTTTCTGGGTTCGAGACGAGCTTCAATTTCAGATCTGTAGGTAGTTTCAGTTTCATCTTCTACATTTTTTTTAAAATAATTATTTATGCTATTTACATCAATATTTTTGGTATGATAGATCTGATTATCGCTGTTTATTGCAGATTTATCCGACATAAATTGGTGGGGTCAGTTGTAAATAAAGAGTGGGTTGGAATGGATTTGGATGAATTCAAAGCGATATTGGGGAATTCAGGGGTTGATATTTGGGGATTAATAGAAACTGCAATAAAGGTAGCATCTTTAGATTATGGGGATGAACTTAGAGTTCGAAGAGATGGTATTGTTGAAAAATTATACACAAATAATTCTCATAACTTTGAGACACCTTTTAATACTAATAATAATAATGATGGTTTTGCCACTAATGCTGTGGTTGAGGCTGTTTTTGGGAGTGAGAGAGGAGGGATGATTACCCGGAAATCAAATTCGCCATCAACACCAGTTTCCATCGGTGGCGGCGATGATGATGAGGAGGAGGTGGATGTGGTGGAGGAGGAACAGGAGCAGGAGCAGCCTGATAGAAGGTTTGTTGAGAATGCGGATGAGGAAGATGAAGATGATGAGCTTAGGAGGATTCTATCTGTCAAAGAACAGATTGAAGACCCTAACCAGGTTGCTTTTCCTTCTTTTGTGTATGTGTATTGTTAATTTACTGATGATTTGGTTTGATTGACTCTGTAATGATTGTTATTTTGTTGATTTATTTTAGTCTGAGGATTCACTGGTTGATTTGCTTCAAAGTTTAGCTGATATGGATATTACATTCAAAGCTCTTAAGGTTAGTGTTAAGCTAATATTATCTTGAATTGCAATTAAGTTTCCATTACTTTGCGTAATATTGAGTTTATCATGGTGATTGATTGTGAAGGAAACTGATATTGGAAGGCATGTGAACCGATTGAGGAAACACCCGTCTGGCGATGTTCGGAGATTAGTTAAAGTGCTAGTCAGGTTTTGATTTAGTTCCTCTCAAGTTTGATGTTTTCATTGAATTGATTGAGTAGGTATGGAGTTGTTGAATTGGATGGTTTTGTGTGTTTGTTTTCTTGATAGAAAATGGAAGGATTTAGTTGATGAATGGGTTAAGTTAAACGTGCCTGGTGAGGTCCAATCCTCCAACAATCTTATTGGTTGAGCTCTCTTCCTTCTTTTAATTTGTTTTTTAGATTATAATTTTGAATCATACAGTATTTATTGTGCTGACTGCAAATTACTGCCTTCAGTGGACGGAGACTCGCCTCTGCAAACTGTTTCGAGGAATCACCAAAACGGAAATCACAATCAGGTATATGGAGTATGTTAAAGTGTTTCTTTTGCAATGAAGAATATGAATATGCAGAAAGCTTTCTTTTGCTTTTATTATTGTTCTCATAATCTCTTTATGAAAGATTCTTATTTTTGCATGTTTTTCTTTGCAGGTTCCTGATTTCGCTTACTCTCCAAATCCACACAGTAAGAAGAGAACCTGATTCTCTAAAGGCTTGCTTGCATTAATTTGTTGATGATTACGGTTGATATTCTTTTGTTTGATATTGTTTGTTTTCTTTGTATGGACAGATGGAAGTTATGGATCCGATAAGAATAATTCGGAGTTTGAACCTAAGAGAAAAGGTCCTCTCCCTCCTCCCCGTAGAGATCCTCCAGCGAAGCCCATGAAGAGCGCTTCTCCAGCATCAGCTCCTCCTCCCAATGTACTCCTTTTTCAAGATTTCAATTTGCTGTTTGGCTGATGAAAATAAAATAAAATAAGTAGAACTAGAAAACACAATGCAGTCTTCTGGTTTTCCTTTCACACAGCTCAGCATTTTCCAAAATCTCAAATTTGATTTTCCTCTGAATTTATCAAAATGTTTTTGCTGAAAGTTGGTCTTTTACGGAGGGGATTTGGAAAATTTGAAACAATTTAAAGTGAATGATAAGTTGGTTTATCATATCCGTTCCTGATTATTTTTCTGGGGGCACGGCTAAAGGTAATGTATTTCTACTGGAAAACTTCAAATTAAACTTTCGGATCATGAAAATTCCAAAGAATTTGATAAAAAGTTTTGCTGAAAATTGCATCTTTCAATGGTTAAACAAATTTTATTAGCTTAGGCCTAGGCCTCGTAGACTTGTCATGTTTTTGCGCTTATTAATATAACTCTTACCTTTTACCAAAAAAAAAAATGGTTAAACAAATTTTATTAGCTGAGGAACTGTGCTGGAAAAGTTTTCTCTTCAAGTTTTTAATGAACAACTCCCGTTGGGATGATGCAGAGGCAGAAAGAGGTGCAAATTGACCCAGATAGATTGGCTTCTGCTAGGAAAAGGCTTCAGGAAAACTACCAAGAAGCTCAAAATGGTTTGGCATTTTGAAACCCTATAACACAATCTTCTCAATTCATGATGATACTTGTCTTCCGTTGTGATACATACTGATGTATGTGCTTTTACTTTGCATTTTGGTTTGTGTTTGTTGAAGCCAAAAAGCAAAGAACAATCCAGGTGATGGACATCCACGAGATACCAAAACCCAGGAATTCCTTCTTTGGAAGAAACAAAGGTGGCTTTCAGAGGCACTAGTCAGCTCGTCGTGTTCTTGACATAATAAGAGAGCTACAAAAGATTATAGAGAAACAAACACACCTTTACACACAGAGAGGCTTTCTGAACCAAATAGGAAGAAAACCTGAGAAGGAAAGTAATGGTTTTTCCGTTGTCCCGCACATCTTTTTGAGTTATTTTTATTTTCAAGGAACAATGTTCCCCTTTTTGATGATTCCCCCCATCAATAATTCTTAGTAATTTGTCAAAGGATTTACAATAATTAAGCTGTGGACTGAGTTGAGTAAGGGGGTTTCCCAAGTAGTGGTTTTTTACTGGTTTGTACAAAGTGTGAAACTTCCTTGTTACTATAGAATTTTGTTAGGAGATTGTACTTGTTACTCTCGTCGTGTGTTCCAATTCTTCTCCTATCCACCATGTGAGCAAGTAAATCTAGTGGAAGGAGAAGAATTTGAGTACACAGACGTAAAATGTGGTACGTAATCCAAAATGTCGTTACAAATATTCGACAACGGAGAGGGTGTCGTTGCCTTGTCGGAAAATAACAGTCCCTCAGATTACAGGAGTTTGAAAATGTATCAGTTTAAGGATGTAAGTCCATAAATGTAATATTTCCATATTTGTGTAAATTCAGAGTGTTGCCCAATTCCCACCATTTTGGTGATAAATAGCCAAATAAGGAAGGTAGTAGGAGCCTAGGGGAGTATAGGAGGAGGTAGGATGATGCATAATAGGATCAGTTTTTCAGGTTAGAAAAAAGAAGTCAAAATGTTAGTGAGTGCCCATCATTGTATTTATTGAAAACTTTTTCATGTTTGTGGTTACATTTAATTGTGGGACCATTTTCATTCTTGTTTAAATGATGAGCAAAGTGTGATGTATCCCG

mRNA sequence

CGCCAAAAGAGGAGGGATATGGAAGACCTAAAATCCCAATAAATAAATAATTCCCCTTTTTATTTTATTTTTATTTGTACAATCTAACAAAAATCCAAACAGCACCCGGAATTCTGTCCTTTGGGCGCTCACTGGCACCCACACACAGACACCCAATTCCTACAAGAACTAGAGAGAGAAAGTAGAGAGAGAAACCAAAAAAATAAAAAAGGAATTTAAAACTCTTCCATCTTCTTCTTCCTAACTTTGCTGCTGCTGCTTCTTCTTCTTGATTTTTCTGAGGTCACCGTATATTGTATTTCTTATATTGTATTAATTAATTACTCGTGTTATATTTCCTATCACAAATCACAATTCATTAGATTATGATACATATTCAATAATATTCATTATTACTTCTAATTCCAATTTTTTTTTAAAACCCAAAATTTGTCGAAATCCCAATACCCAATAACCCTTCAAAGGAGGAATTTTCTGGGTTCGAGACGAGCTTCAATTTCAGATCTGTAGATTTATCCGACATAAATTGGTGGGGTCAGTTGTAAATAAAGAGTGGGTTGGAATGGATTTGGATGAATTCAAAGCGATATTGGGGAATTCAGGGGTTGATATTTGGGGATTAATAGAAACTGCAATAAAGGTAGCATCTTTAGATTATGGGGATGAACTTAGAGTTCGAAGAGATGGTATTGTTGAAAAATTATACACAAATAATTCTCATAACTTTGAGACACCTTTTAATACTAATAATAATAATGATGGTTTTGCCACTAATGCTGTGGTTGAGGCTGTTTTTGGGAGTGAGAGAGGAGGGATGATTACCCGGAAATCAAATTCGCCATCAACACCAGTTTCCATCGGTGGCGGCGATGATGATGAGGAGGAGGTGGATGTGGTGGAGGAGGAACAGGAGCAGGAGCAGCCTGATAGAAGGTTTGTTGAGAATGCGGATGAGGAAGATGAAGATGATGAGCTTAGGAGGATTCTATCTGTCAAAGAACAGATTGAAGACCCTAACCAGTCTGAGGATTCACTGGTTGATTTGCTTCAAAGTTTAGCTGATATGGATATTACATTCAAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAACCGATTGAGGAAACACCCGTCTGGCGATGTTCGGAGATTAGTTAAAGTGCTAGTCAGAAAATGGAAGGATTTAGTTGATGAATGGGTTAAGTTAAACGTGCCTGGTGAGGTCCAATCCTCCAACAATCTTATTGTGGACGGAGACTCGCCTCTGCAAACTGTTTCGAGGAATCACCAAAACGGAAATCACAATCAGGTTCCTGATTTCGCTTACTCTCCAAATCCACACAATGGAAGTTATGGATCCGATAAGAATAATTCGGAGTTTGAACCTAAGAGAAAAGGTCCTCTCCCTCCTCCCCGTAGAGATCCTCCAGCGAAGCCCATGAAGAGCGCTTCTCCAGCATCAGCTCCTCCTCCCAATAGGCAGAAAGAGGTGCAAATTGACCCAGATAGATTGGCTTCTGCTAGGAAAAGGCTTCAGGAAAACTACCAAGAAGCTCAAAATGCCAAAAAGCAAAGAACAATCCAGGTGATGGACATCCACGAGATACCAAAACCCAGGAATTCCTTCTTTGGAAGAAACAAAGGTGGCTTTCAGAGGCACTAGTCAGCTCGTCGTGTTCTTGACATAATAAGAGAGCTACAAAAGATTATAGAGAAACAAACACACCTTTACACACAGAGAGGCTTTCTGAACCAAATAGGAAGAAAACCTGAGAAGGAAAGTAATGGTTTTTCCGTTGTCCCGCACATCTTTTTGAGTTATTTTTATTTTCAAGGAACAATGTTCCCCTTTTTGATGATTCCCCCCATCAATAATTCTTAGTAATTTGTCAAAGGATTTACAATAATTAAGCTGTGGACTGAGTTGAGTAAGGGGGTTTCCCAAGTAGTGGTTTTTTACTGGTTTGTACAAAGTGTGAAACTTCCTTGTTACTATAGAATTTTGTTAGGAGATTGTACTTGTTACTCTCGTCGTGTGTTCCAATTCTTCTCCTATCCACCATGTGAGCAAGTAAATCTAGTGGAAGGAGAAGAATTTGAGTACACAGACGTAAAATGTGGTACGTAATCCAAAATGTCGTTACAAATATTCGACAACGGAGAGGGTGTCGTTGCCTTGTCGGAAAATAACAGTCCCTCAGATTACAGGAGTTTGAAAATGTATCAGTTTAAGGATGTAAGTCCATAAATGTAATATTTCCATATTTGTGTAAATTCAGAGTGTTGCCCAATTCCCACCATTTTGGTGATAAATAGCCAAATAAGGAAGGTAGTAGGAGCCTAGGGGAGTATAGGAGGAGGTAGGATGATGCATAATAGGATCAGTTTTTCAGGTTAGAAAAAAGAAGTCAAAATGTTAGTGAGTGCCCATCATTGTATTTATTGAAAACTTTTTCATGTTTGTGGTTACATTTAATTGTGGGACCATTTTCATTCTTGTTTAAATGATGAGCAAAGTGTGATGTATCCCG

Coding sequence (CDS)

ATGGATTTGGATGAATTCAAAGCGATATTGGGGAATTCAGGGGTTGATATTTGGGGATTAATAGAAACTGCAATAAAGGTAGCATCTTTAGATTATGGGGATGAACTTAGAGTTCGAAGAGATGGTATTGTTGAAAAATTATACACAAATAATTCTCATAACTTTGAGACACCTTTTAATACTAATAATAATAATGATGGTTTTGCCACTAATGCTGTGGTTGAGGCTGTTTTTGGGAGTGAGAGAGGAGGGATGATTACCCGGAAATCAAATTCGCCATCAACACCAGTTTCCATCGGTGGCGGCGATGATGATGAGGAGGAGGTGGATGTGGTGGAGGAGGAACAGGAGCAGGAGCAGCCTGATAGAAGGTTTGTTGAGAATGCGGATGAGGAAGATGAAGATGATGAGCTTAGGAGGATTCTATCTGTCAAAGAACAGATTGAAGACCCTAACCAGTCTGAGGATTCACTGGTTGATTTGCTTCAAAGTTTAGCTGATATGGATATTACATTCAAAGCTCTTAAGGAAACTGATATTGGAAGGCATGTGAACCGATTGAGGAAACACCCGTCTGGCGATGTTCGGAGATTAGTTAAAGTGCTAGTCAGAAAATGGAAGGATTTAGTTGATGAATGGGTTAAGTTAAACGTGCCTGGTGAGGTCCAATCCTCCAACAATCTTATTGTGGACGGAGACTCGCCTCTGCAAACTGTTTCGAGGAATCACCAAAACGGAAATCACAATCAGGTTCCTGATTTCGCTTACTCTCCAAATCCACACAATGGAAGTTATGGATCCGATAAGAATAATTCGGAGTTTGAACCTAAGAGAAAAGGTCCTCTCCCTCCTCCCCGTAGAGATCCTCCAGCGAAGCCCATGAAGAGCGCTTCTCCAGCATCAGCTCCTCCTCCCAATAGGCAGAAAGAGGTGCAAATTGACCCAGATAGATTGGCTTCTGCTAGGAAAAGGCTTCAGGAAAACTACCAAGAAGCTCAAAATGCCAAAAAGCAAAGAACAATCCAGGTGATGGACATCCACGAGATACCAAAACCCAGGAATTCCTTCTTTGGAAGAAACAAAGGTGGCTTTCAGAGGCACTAG

Protein sequence

MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFNTNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQPDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRNKGGFQRH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03406.1Spo03406.1mRNA


Homology
[Close]
BLAST of Spo03406.1 vs. NCBI nr
Match: gi|902192930|gb|KNA12147.1| (hypothetical protein SOVF_128410 [Spinacia oleracea])

HSP 1 Score: 707.2 bits (1824), Expect = 1.500e-200
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN
Sbjct: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
           TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ
Sbjct: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
           PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI
Sbjct: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240
           GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS
Sbjct: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240

Query: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300
           RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA
Sbjct: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300

Query: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360
           SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN
Sbjct: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360

Query: 361 KGGFQRH 368
           KGGFQRH
Sbjct: 361 KGGFQRH 367
[Close]
BLAST of Spo03406.1 vs. NCBI nr
Match: gi|731338371|ref|XP_010680293.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 576.6 bits (1485), Expect = 3.000e-161
Identity = 310/367 (84.47%), Postives = 332/367 (90.46%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F+ ILGNSGVDIWGLIETAIKVASL+Y DEL+VRRDGIVEKLYTN  HN+E P  
Sbjct: 1   MDLDDFRMILGNSGVDIWGLIETAIKVASLEYRDELKVRRDGIVEKLYTN-CHNYERP-- 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
               ++GFATNAVV+AVFG+E   ++  KS SPSTPVSIGGGDD+E      EE QEQEQ
Sbjct: 61  ---PSNGFATNAVVDAVFGTENE-IVPNKSVSPSTPVSIGGGDDEE------EEGQEQEQ 120

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
            +RRFVEN DEEDEDDELRR+LS+KEQIEDP+QSEDS+VDLLQSLADMDITFKALKETDI
Sbjct: 121 -NRRFVENLDEEDEDDELRRVLSIKEQIEDPHQSEDSVVDLLQSLADMDITFKALKETDI 180

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240
           GRHVN LRKHPSGDVRRLVK+LVRKWKDLVDEWV+ N PGEVQSS+NLI DGDSPLQTVS
Sbjct: 181 GRHVNHLRKHPSGDVRRLVKLLVRKWKDLVDEWVRSNTPGEVQSSSNLIADGDSPLQTVS 240

Query: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300
           RNHQNGNHNQVPDFAYSPNPHNGS GSDKNNSE EPKRK PLPPPRRDPPAKPMKSASPA
Sbjct: 241 RNHQNGNHNQVPDFAYSPNPHNGSSGSDKNNSELEPKRKAPLPPPRRDPPAKPMKSASPA 300

Query: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360
           SAPPPNRQK+VQ D DRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRN+FFGRN
Sbjct: 301 SAPPPNRQKQVQADADRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNAFFGRN 353

Query: 361 KGGFQRH 368
           KGGFQRH
Sbjct: 361 KGGFQRH 353
[Close]
BLAST of Spo03406.1 vs. NCBI nr
Match: gi|590569583|ref|XP_007011109.1| (Transcription elongation factor (TFIIS) family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 346.3 bits (887), Expect = 6.600e-92
Identity = 203/375 (54.13%), Postives = 249/375 (66.40%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F+++L  +GVD+W  I++AI VASLDYG EL+ RRDGIVE+LY            
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLY------------ 60

Query: 61  TNNNNDGFATNAVVEAV---FGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQE 120
                   AT+ V       FG    G    K  SP+      GG               
Sbjct: 61  --------ATSMVTRCKSCDFGERSNGYQVNKEGSPNEGKGGEGG--------------- 120

Query: 121 QEQPDRRFVENADEEDED---------DELRRILSVKEQIEDPNQSEDSLVDLLQSLADM 180
           +E P   F   +D ED D         DE +R+L +KE +E+P+QSEDSLVDLLQSLADM
Sbjct: 121 RESP---FTPQSDNEDGDLDPYGGLFDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADM 180

Query: 181 DITFKALKETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNL 240
           DITF+ALKETDIGRHVN+LRKH S DVRRLVK LVRKWK++VDEWV++N PGE++S+   
Sbjct: 181 DITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESA--A 240

Query: 241 IVDGDSPLQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRD 300
           ++DGDSP Q + +N       QVPDFAYSPNPHNGS+G +KNNSE E K K P+PPPR+D
Sbjct: 241 LMDGDSPQQKLPQN----GRQQVPDFAYSPNPHNGSFGLEKNNSEPERKPK-PIPPPRKD 300

Query: 301 PPAKPMKSASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHE 360
           PP +P  S  P +      QKE   D +RLASARKRLQ NY+EA+NAKKQRTIQVMDIHE
Sbjct: 301 PPPRPTHSTPPQNVQRQREQKESNFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHE 330

Query: 361 IPKPRNSFFGRNKGG 364
           +PKP+N+FFG+NKGG
Sbjct: 361 LPKPKNAFFGKNKGG 330
[Close]
BLAST of Spo03406.1 vs. NCBI nr
Match: gi|697120023|ref|XP_009613975.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Nicotiana tomentosiformis])

HSP 1 Score: 343.2 bits (879), Expect = 5.600e-91
Identity = 209/376 (55.59%), Postives = 256/376 (68.09%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLDEF+ IL  S VD+W LI+ AI VAS+D GDEL+ RRDGIVEKLY+    +      
Sbjct: 1   MDLDEFRLILSESKVDVWTLIDAAISVASVDCGDELKHRRDGIVEKLYSTRCRS------ 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRK-----SNSPSTPVSIGGGDDDEEEVDVVEEE 120
                     N VV   +  + G  +TR      + SP TP S    ++   +    +EE
Sbjct: 61  ---------CNDVVNGQYSLDNGERVTRNVETVMNKSPLTPESNHRNNNTSNDNKNDDEE 120

Query: 121 QEQEQPDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKAL 180
           ++ +     F        +DDE  RIL++KEQ+EDP  S++ ++DLLQSLADMDITF+AL
Sbjct: 121 EDVDPYGGLF--------DDDEQTRILTIKEQLEDPQLSDEDVIDLLQSLADMDITFQAL 180

Query: 181 KETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSP 240
           KETDIGRHVNRLRKHPS +VRRLVK+LVRKWK+ VD+WV+LN P +  SSN +  DGDSP
Sbjct: 181 KETDIGRHVNRLRKHPSNEVRRLVKMLVRKWKETVDDWVRLNQPEQHGSSNLIAADGDSP 240

Query: 241 LQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMK 300
            Q V +N  NG H+QVPDF YSPNP NGS  SD+NNSE E K K  L  PR   P +P++
Sbjct: 241 QQNVPKNQLNG-HHQVPDFTYSPNPRNGSSSSDRNNSESEYKPKPVL--PRNVTPTRPLQ 300

Query: 301 SA-SPASAPPPNR--QKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKP 360
           SA  P SAPPP+R   +E  ID ++L SAR+RLQENYQEAQNAKKQRTIQVMDIHEIPKP
Sbjct: 301 SAPKPTSAPPPSRPPPRESAIDLEKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPKP 350

Query: 361 RNSFFGRNKGGFQ-RH 368
           +N FF +NKGGFQ RH
Sbjct: 361 KNGFFAKNKGGFQGRH 350
[Close]
BLAST of Spo03406.1 vs. NCBI nr
Match: gi|698477895|ref|XP_009786138.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Nicotiana sylvestris])

HSP 1 Score: 340.9 bits (873), Expect = 2.800e-90
Identity = 207/377 (54.91%), Postives = 257/377 (68.17%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLDEF+ +L  S VD+W +I+ AI VAS+D GDEL+ RRDGIVEKLY+           
Sbjct: 1   MDLDEFRLVLSESKVDVWTMIDAAISVASVDCGDELKHRRDGIVEKLYSTRCR------- 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRK-----SNSPSTPVSIGGGDDDEEEVDVVEEE 120
                   + N VV   +  + G  +TR      + SP TP S    ++   +    +EE
Sbjct: 61  --------SCNDVVNGQYSLDNGQTVTRNVETVMNKSPITPESNHRNNNTSNDNKNDDEE 120

Query: 121 QEQEQPDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKAL 180
           ++ +     F        +DDE  RIL++KEQ+EDP  S++ ++DLLQSLADMDITF+AL
Sbjct: 121 EDVDPYGGLF--------DDDEQTRILTIKEQLEDPQLSDEDVIDLLQSLADMDITFQAL 180

Query: 181 KETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSP 240
           KETDIGRHVNRLRKHPS +VRRLVK+LVRKWK+ VD+WV+LN P +  SSN +  DGDSP
Sbjct: 181 KETDIGRHVNRLRKHPSNEVRRLVKMLVRKWKETVDDWVRLNQPEQHGSSNLIAADGDSP 240

Query: 241 LQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRD-PPAKPM 300
            Q V +N  NG H+QVPDF YSPNP NGS  SD+NNSE E K   P P P R+  P +P+
Sbjct: 241 QQNVQKNQLNG-HHQVPDFTYSPNPRNGSSSSDRNNSESEHK---PKPVPLRNVTPTRPL 300

Query: 301 KSA-SPASAPPPNR--QKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPK 360
           +SA  P SAPPP+R   +E  ID ++L SAR+RLQENYQEAQNAKKQRTIQVMDIHEIPK
Sbjct: 301 QSAPKPTSAPPPSRPPPRESAIDLEKLNSARRRLQENYQEAQNAKKQRTIQVMDIHEIPK 350

Query: 361 PRNSFFGRNKGGFQ-RH 368
           P+N FF +NKGGFQ RH
Sbjct: 361 PKNGFFAKNKGGFQGRH 350
[Close]
BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY13_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_128410 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 1.000e-200
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN
Sbjct: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
           TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ
Sbjct: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
           PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI
Sbjct: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240
           GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS
Sbjct: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240

Query: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300
           RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA
Sbjct: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300

Query: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360
           SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN
Sbjct: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360

Query: 361 KGGFQRH 368
           KGGFQRH
Sbjct: 361 KGGFQRH 367
[Close]
BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F104_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g133320 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 2.100e-161
Identity = 310/367 (84.47%), Postives = 332/367 (90.46%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F+ ILGNSGVDIWGLIETAIKVASL+Y DEL+VRRDGIVEKLYTN  HN+E P  
Sbjct: 1   MDLDDFRMILGNSGVDIWGLIETAIKVASLEYRDELKVRRDGIVEKLYTN-CHNYERP-- 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
               ++GFATNAVV+AVFG+E   ++  KS SPSTPVSIGGGDD+E      EE QEQEQ
Sbjct: 61  ---PSNGFATNAVVDAVFGTENE-IVPNKSVSPSTPVSIGGGDDEE------EEGQEQEQ 120

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
            +RRFVEN DEEDEDDELRR+LS+KEQIEDP+QSEDS+VDLLQSLADMDITFKALKETDI
Sbjct: 121 -NRRFVENLDEEDEDDELRRVLSIKEQIEDPHQSEDSVVDLLQSLADMDITFKALKETDI 180

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240
           GRHVN LRKHPSGDVRRLVK+LVRKWKDLVDEWV+ N PGEVQSS+NLI DGDSPLQTVS
Sbjct: 181 GRHVNHLRKHPSGDVRRLVKLLVRKWKDLVDEWVRSNTPGEVQSSSNLIADGDSPLQTVS 240

Query: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSASPA 300
           RNHQNGNHNQVPDFAYSPNPHNGS GSDKNNSE EPKRK PLPPPRRDPPAKPMKSASPA
Sbjct: 241 RNHQNGNHNQVPDFAYSPNPHNGSSGSDKNNSELEPKRKAPLPPPRRDPPAKPMKSASPA 300

Query: 301 SAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFFGRN 360
           SAPPPNRQK+VQ D DRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRN+FFGRN
Sbjct: 301 SAPPPNRQKQVQADADRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNAFFGRN 353

Query: 361 KGGFQRH 368
           KGGFQRH
Sbjct: 361 KGGFQRH 353
[Close]
BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Match: A0A061FYN3_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045322 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 4.600e-92
Identity = 203/375 (54.13%), Postives = 249/375 (66.40%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F+++L  +GVD+W  I++AI VASLDYG EL+ RRDGIVE+LY            
Sbjct: 1   MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLY------------ 60

Query: 61  TNNNNDGFATNAVVEAV---FGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQE 120
                   AT+ V       FG    G    K  SP+      GG               
Sbjct: 61  --------ATSMVTRCKSCDFGERSNGYQVNKEGSPNEGKGGEGG--------------- 120

Query: 121 QEQPDRRFVENADEEDED---------DELRRILSVKEQIEDPNQSEDSLVDLLQSLADM 180
           +E P   F   +D ED D         DE +R+L +KE +E+P+QSEDSLVDLLQSLADM
Sbjct: 121 RESP---FTPQSDNEDGDLDPYGGLFDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADM 180

Query: 181 DITFKALKETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNL 240
           DITF+ALKETDIGRHVN+LRKH S DVRRLVK LVRKWK++VDEWV++N PGE++S+   
Sbjct: 181 DITFQALKETDIGRHVNKLRKHSSNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESA--A 240

Query: 241 IVDGDSPLQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRD 300
           ++DGDSP Q + +N       QVPDFAYSPNPHNGS+G +KNNSE E K K P+PPPR+D
Sbjct: 241 LMDGDSPQQKLPQN----GRQQVPDFAYSPNPHNGSFGLEKNNSEPERKPK-PIPPPRKD 300

Query: 301 PPAKPMKSASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHE 360
           PP +P  S  P +      QKE   D +RLASARKRLQ NY+EA+NAKKQRTIQVMDIHE
Sbjct: 301 PPPRPTHSTPPQNVQRQREQKESNFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHE 330

Query: 361 IPKPRNSFFGRNKGG 364
           +PKP+N+FFG+NKGG
Sbjct: 361 LPKPKNAFFGKNKGG 330
[Close]
BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Match: B9SVQ9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0009800 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.800e-89
Identity = 211/375 (56.27%), Postives = 264/375 (70.40%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSH--NFETP 60
           MD+D+F++IL +SGVD+W  I+TAI VASLD+G+EL+ RRD IVE LY+++    N +  
Sbjct: 1   MDVDDFRSILESSGVDVWTFIDTAIVVASLDFGNELKQRRDKIVEMLYSSSGRCRNCDLD 60

Query: 61  FNTNNNNDGFATNAVVEAVFGSERGGMITRKSNSPST-PVSIGGGDDDEEEVDVVEEEQE 120
               NN       + +E+  G   G      S SPST P SI G    +E+VDVV ++ +
Sbjct: 61  VGRINNGHEIKERSHLESKGGGGGG------SGSPSTTPRSIHG----DEDVDVVNDDDD 120

Query: 121 QEQPDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKE 180
            +  D      A   D  DE ++IL +K+ +EDP+QSEDSLVDLLQSLADMDITFKALKE
Sbjct: 121 DDDDDDGLDPYAGLFD--DEQKKILEIKQHLEDPDQSEDSLVDLLQSLADMDITFKALKE 180

Query: 181 TDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQ 240
           TDIGRHVN+LRKH S DVRRLVK LVRKWKD+VDEWVKLN PG+  +S+ L+ DGDSP Q
Sbjct: 181 TDIGRHVNQLRKHTSNDVRRLVKQLVRKWKDIVDEWVKLNPPGQ-HASSGLMADGDSPRQ 240

Query: 241 TVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKPMKSA 300
              +N     H+QVPDFAYSPNPHNGS GSDKNNS  EP+R+ P P PR++ P +P + +
Sbjct: 241 KFPQN----GHHQVPDFAYSPNPHNGSSGSDKNNS--EPERR-PKPVPRKEAPPRPAQQS 300

Query: 301 SPASAPPPN-------RQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIP 360
            P SA   +       +Q+E   D DRLASARKRLQ NY+EA+NAKKQRTIQVMDIHE+P
Sbjct: 301 VPVSASASHIVQRQREQQRENNFDSDRLASARKRLQANYKEAENAKKQRTIQVMDIHELP 355

Query: 361 KP--RNSFFGRNKGG 364
           KP  +N+FF +NKGG
Sbjct: 361 KPKNKNTFFAKNKGG 355
[Close]
BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Match: A0A166GAZ4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001415 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.100e-88
Identity = 213/367 (58.04%), Postives = 255/367 (69.48%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MD+DEF+ IL +S VDIW  I+TAI VAS DYG+EL+ RRD IV++LY     N     N
Sbjct: 1   MDIDEFRRILSDSAVDIWSFIDTAIAVASSDYGEELKDRRDEIVQRLYA--CRNCGDQVN 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
            +          +VE V   +      +  +SP TP S+      EE+VDVV +++E++ 
Sbjct: 61  EHRR--------IVEPVVKVDNSQ--AKLKHSPYTPQSV----HREEDVDVVNDDEEEDP 120

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
               F        +DDE  RIL +K+QIEDP+Q+E+SLV+LLQ LADMDITFK LKETDI
Sbjct: 121 YAGLF--------DDDEETRILRIKDQIEDPDQTEESLVELLQGLADMDITFKGLKETDI 180

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSPLQTVS 240
           GR+VNRLRKH S +VRRLVK LVRKWKDLVDEWVKLN P E+ SS  +I DG+SP   + 
Sbjct: 181 GRYVNRLRKHESNEVRRLVKQLVRKWKDLVDEWVKLN-PPEIPSS-TIIADGESPPMNMR 240

Query: 241 RNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPAKP--MKSAS 300
           RN  NG  +QVPDFAYSPNP+NGS GS++NNSE E K   P   PRR+  AKP    +A 
Sbjct: 241 RNLPNG--HQVPDFAYSPNPNNGSSGSERNNSEPEQK---PKSVPRRELVAKPTYRPTAG 300

Query: 301 PASAPPPNR-QKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIPKPRNSFF 360
            ASAPP NR  KE  IDPDRLASARKRL ENYQEAQNAKKQRTIQVMDIHEIPKP+N + 
Sbjct: 301 SASAPPLNRPHKETAIDPDRLASARKRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNGYI 336

Query: 361 GRNKGGF 365
            +NKGGF
Sbjct: 361 AKNKGGF 336
[Close]
BLAST of Spo03406.1 vs. ExPASy Swiss-Prot
Match: MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.100e-73
Identity = 184/373 (49.33%), Postives = 240/373 (64.34%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F++++ N+GVD+W  I+TAI VASLDYG EL+ RRD IVE+LY  +  N      
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMAN-----K 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
             N + G   N V EA  G    G +  ++            ++DEE V    EE+ +E+
Sbjct: 61  CRNCDFGGGGN-VTEAAIGRVNNGRVHEETE-----------EEDEEGVTAAAEEEVREK 120

Query: 121 PDRRFVENADEEDE-----DDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKAL 180
                VE+ D+ D      DDE + I+ +KE++EDP+ SE+SLV+LLQ+L DMDITF+AL
Sbjct: 121 SVN--VEDDDDFDPFAGLFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQAL 180

Query: 181 KETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSP 240
           +ETDIGRHVNR+RKHPS +VRRL K LV+KWK+ VDEWVK N PG+++  + LI D DSP
Sbjct: 181 QETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPS-LIADEDSP 240

Query: 241 LQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGP--LPPPRRDPP--A 300
           +Q    N   G+  QVPDF YSP P NG   S KN++  EP+RK     P PRR+ P  A
Sbjct: 241 VQKALHN---GSRQQVPDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPA 300

Query: 301 KPMK-SASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIP 360
           KP + S S  + P     KEV  D     +ARKRLQ+NY++A+NAKKQRTIQVMDIH+IP
Sbjct: 301 KPSRPSPSQQTIPRDKEHKEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIP 345

Query: 361 KPRNSFFGRNKGG 364
           KP+   F   KGG
Sbjct: 361 KPKKGGFFPRKGG 345
[Close]
BLAST of Spo03406.1 vs. ExPASy Swiss-Prot
Match: MD26A_ARATH (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.600e-8
Identity = 59/222 (26.58%), Postives = 95/222 (42.79%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           + LD ++        DI+G+I+ AI VA+ D+  E + R D I E               
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAE--------------- 67

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
                     +  V    G +   +      +    V +GGG D  +      E +E   
Sbjct: 68  -------LLFSCKVSRCIGCDHLELSIAGDEAAVEIVGVGGGGDRGDSGVATGEGEEASV 127

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
                       DE   +R ILS K+     ++ +  L++ L+ L  M ++   LK+T+I
Sbjct: 128 ----------SVDEVMRIRDILSNKD-----DEKDSVLLESLRKLESMSMSVDILKDTEI 187

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEV 223
           G+ VN LR+H S  + +L K L  +WK LVD+W  +N P E+
Sbjct: 188 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQW--MNTPEEM 190
[Close]
BLAST of Spo03406.1 vs. TAIR (Arabidopsis)
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 278.5 bits (711), Expect = 6.000e-75
Identity = 184/373 (49.33%), Postives = 240/373 (64.34%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           MDLD+F++++ N+GVD+W  I+TAI VASLDYG EL+ RRD IVE+LY  +  N      
Sbjct: 1   MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMAN-----K 60

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
             N + G   N V EA  G    G +  ++            ++DEE V    EE+ +E+
Sbjct: 61  CRNCDFGGGGN-VTEAAIGRVNNGRVHEETE-----------EEDEEGVTAAAEEEVREK 120

Query: 121 PDRRFVENADEEDE-----DDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKAL 180
                VE+ D+ D      DDE + I+ +KE++EDP+ SE+SLV+LLQ+L DMDITF+AL
Sbjct: 121 SVN--VEDDDDFDPFAGLFDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQAL 180

Query: 181 KETDIGRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEVQSSNNLIVDGDSP 240
           +ETDIGRHVNR+RKHPS +VRRL K LV+KWK+ VDEWVK N PG+++  + LI D DSP
Sbjct: 181 QETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPS-LIADEDSP 240

Query: 241 LQTVSRNHQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGP--LPPPRRDPP--A 300
           +Q    N   G+  QVPDF YSP P NG   S KN++  EP+RK     P PRR+ P  A
Sbjct: 241 VQKALHN---GSRQQVPDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPA 300

Query: 301 KPMK-SASPASAPPPNRQKEVQIDPDRLASARKRLQENYQEAQNAKKQRTIQVMDIHEIP 360
           KP + S S  + P     KEV  D     +ARKRLQ+NY++A+NAKKQRTIQVMDIH+IP
Sbjct: 301 KPSRPSPSQQTIPRDKEHKEVDFD-----TARKRLQQNYRQAENAKKQRTIQVMDIHDIP 345

Query: 361 KPRNSFFGRNKGG 364
           KP+   F   KGG
Sbjct: 361 KPKKGGFFPRKGG 345
[Close]
BLAST of Spo03406.1 vs. TAIR (Arabidopsis)
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 8.800e-10
Identity = 59/222 (26.58%), Postives = 95/222 (42.79%), Query Frame = 1 

		  

Query: 1   MDLDEFKAILGNSGVDIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHNFETPFN 60
           + LD ++        DI+G+I+ AI VA+ D+  E + R D I E               
Sbjct: 8   VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAE--------------- 67

Query: 61  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 120
                     +  V    G +   +      +    V +GGG D  +      E +E   
Sbjct: 68  -------LLFSCKVSRCIGCDHLELSIAGDEAAVEIVGVGGGGDRGDSGVATGEGEEASV 127

Query: 121 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 180
                       DE   +R ILS K+     ++ +  L++ L+ L  M ++   LK+T+I
Sbjct: 128 ----------SVDEVMRIRDILSNKD-----DEKDSVLLESLRKLESMSMSVDILKDTEI 187

Query: 181 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVKLNVPGEV 223
           G+ VN LR+H S  + +L K L  +WK LVD+W  +N P E+
Sbjct: 188 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQW--MNTPEEM 190
[Close]
BLAST of Spo03406.1 vs. TAIR (Arabidopsis)
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.700e-6
Identity = 85/318 (26.73%), Postives = 141/318 (44.34%), Query Frame = 1 

		  

Query: 16  DIWGLIETAIKVASLDYGDELRVRRDGIVEKLYTNNSHN--------FETPFN------- 75
           DI+G+I+ AI VA+ D  ++ + RRD I E L++   +            P +       
Sbjct: 21  DIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGCDHLELSVPGDDEANRGT 80

Query: 76  TNNNNDGFATNAVVEAVFGSERGGMITRKSNSPSTPVSIGGGDDDEEEVDVVEEEQEQEQ 135
           T N   G A +   E   GS+       K+NS         GD+++   +   +E E   
Sbjct: 81  TGNGGGGTAVDEDYEVAGGSKES-----KANSSR-------GDNNQIVSNYTFDEAEALS 140

Query: 136 PDRRFVENADEEDEDDELRRILSVKEQIEDPNQSEDSLVDLLQSLADMDITFKALKETDI 195
            +    E +    E   ++ IL  KE  ++PN     L+D L+ L  M +    LK T+I
Sbjct: 141 DE--IEEFSVVSKEVARIKEILLNKE--DEPNSV---LLDSLRHLKLMSLNVDILKSTEI 200

Query: 196 GRHVNRLRKHPSGDVRRLVKVLVRKWKDLVDEWVK-----LNVPGEVQSSNNLIVDGDSP 255
           G+ VN LRKH S  +R+L K L+ +WK+LVD+WV          G  +S+N  ++D +  
Sbjct: 201 GKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEA 260

Query: 256 LQTVSRN----HQNGNHNQVPDFAYSPNPHNGSYGSDKNNSEFEPKRKGPLPPPRRDPPA 303
             ++  +        N  ++  F  S +       S+++N+  E +R+ P    +R P  
Sbjct: 261 FPSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERR-PQNIAKRKPEG 318
The following BLAST results are available for this feature:
BLAST of Spo03406.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902192930|gb|KNA12147.1|1.5e-200100.hypothetical protein SOVF_1284... [more]
gi|731338371|ref|XP_010680293.1|3.0e-16184.4PREDICTED: probable mediator o... [more]
gi|590569583|ref|XP_007011109.1|6.6e-9254.1Transcription elongation facto... [more]
gi|697120023|ref|XP_009613975.1|5.6e-9155.5PREDICTED: probable mediator o... [more]
gi|698477895|ref|XP_009786138.1|2.8e-9054.9PREDICTED: probable mediator o... [more]
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BLAST of Spo03406.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QY13_SPIOL1.0e-200100.Uncharacterized protein OS=Spi... [more]
A0A0J8F104_BETVU2.1e-16184.4Uncharacterized protein OS=Bet... [more]
A0A061FYN3_THECC4.6e-9254.1Transcription elongation facto... [more]
B9SVQ9_RICCO2.8e-8956.2Putative uncharacterized prote... [more]
A0A166GAZ4_DAUCA1.1e-8858.0Uncharacterized protein OS=Dau... [more]
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BLAST of Spo03406.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MD26C_ARATH1.1e-7349.3Probable mediator of RNA polym... [more]
MD26A_ARATH1.6e-826.5Probable mediator of RNA polym... [more]
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BLAST of Spo03406.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G09850.16.0e-7549.3Transcription elongation facto... [more]
AT3G10820.28.8e-1026.5Transcription elongation facto... [more]
AT5G05140.12.7e-626.7Transcription elongation facto... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 141..212
score: 9.1
IPR017923Transcription factor IIS, N-terminalGENE3D1.20.930.10coord: 140..211
score: 1.7
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 160..210
score: 1.5
IPR017923Transcription factor IIS, N-terminalPROFILEPS51319TFIIS_Ncoord: 136..213
score: 25
IPR017923Transcription factor IIS, N-terminalunknownSSF47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 140..215
score: 4.84
NoneNo IPR availableunknownCoilCoilcoord: 318..342
scor
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..367
score: 9.3
NoneNo IPR availablePANTHERPTHR15141:SF14TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 1..367
score: 9.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007064 mitotic sister chromatid cohesion
biological_process GO:0006281 DNA repair
biological_process GO:0010467 gene expression
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0044238 primary metabolic process
biological_process GO:0009058 biosynthetic process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0008278 cohesin complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0000785 chromatin
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0005509 calcium ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo167690.76Barchart | Table
Spo031910.74Barchart | Table
Spo037350.74Barchart | Table
Spo138310.73Barchart | Table
Spo256330.73Barchart | Table
Spo209900.73Barchart | Table
Spo231990.73Barchart | Table
Spo039500.73Barchart | Table
Spo074150.72Barchart | Table
Spo221460.72Barchart | Table
Spo235160.72Barchart | Table
Spo038650.72Barchart | Table
Spo001730.72Barchart | Table
Spo189430.72Barchart | Table
Spo011040.71Barchart | Table
Spo182850.71Barchart | Table
Spo037300.71Barchart | Table
Spo126160.71Barchart | Table
Spo083760.70Barchart | Table
Spo175640.70Barchart | Table
Spo003890.70Barchart | Table
Spo073520.70Barchart | Table
Spo250130.70Barchart | Table
Spo007830.69Barchart | Table
Spo240650.69Barchart | Table
Spo085110.69Barchart | Table
Spo208520.69Barchart | Table
Spo234340.69Barchart | Table
Spo254530.69Barchart | Table
Spo034160.69Barchart | Table
Spo103990.69Barchart | Table
Spo016060.68Barchart | Table
Spo254050.68Barchart | Table
Spo255730.68Barchart | Table
Spo220860.68Barchart | Table
Spo216280.68Barchart | Table
Spo150030.68Barchart | Table
Spo150120.68Barchart | Table
Spo215990.68Barchart | Table
Spo131610.67Barchart | Table
Spo013630.67Barchart | Table
Spo114820.67Barchart | Table
Spo135140.67Barchart | Table
Spo181300.67Barchart | Table
Spo206090.67Barchart | Table
Spo210050.67Barchart | Table
Spo226590.67Barchart | Table
Spo266400.67Barchart | Table
Spo213450.66Barchart | Table
Spo116400.66Barchart | Table
Spo214220.66Barchart | Table
Spo098420.66Barchart | Table
Spo155310.66Barchart | Table
Spo083550.66Barchart | Table
Spo206930.66Barchart | Table
Spo056130.66Barchart | Table
Spo180160.66Barchart | Table
Spo183300.66Barchart | Table
Spo173820.66Barchart | Table
Spo196900.66Barchart | Table
Spo218330.66Barchart | Table
Spo207560.66Barchart | Table
Spo158420.66Barchart | Table
Spo046310.66Barchart | Table
Spo194910.65Barchart | Table
Spo047260.65Barchart | Table
Spo168040.65Barchart | Table
Spo208870.65Barchart | Table
Spo145890.65Barchart | Table
Spo141720.65Barchart | Table
Spo126580.65Barchart | Table
Spo267950.65Barchart | Table
Spo228590.65Barchart | Table
Spo111900.65Barchart | Table
Spo089820.65Barchart | Table
Spo060220.65Barchart | Table