Spo03518 (gene)

Overview
NameSpo03518
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibosomal protein L34
LocationSpoScf_00432 : 261027 .. 266045 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTACAATAAACTCGATAAGGTTCCCTTTCCCTCTTCTCTTTTTCTCACAAAGATAAGTAAGAGAGAGAATTTCTCATTTCTCACAACAAGAACAAGGAGATAACAACAATGGCGACGCTTTCATTGCTCTCAACTGGGGTTGGAGCAGCCATAACCAACCGTACTCCTTCAGCTTCCCTCACTTTTATCACTGGTTCAAGAACAACCAACAAAAGGGTGTCCTTTAACGGCGGTTCAGCTCGTTCCGGGTCACTCCATTGCTCTTTCTTGGCTCCTTCATCTTCTCTCTCCTCCAACTTCTCAGGTTCCTCAACTTTCCCTTTTCTTAATTTTTGCGCTTTTGTTATCCTACCTATTTTACTTCAATTACTGAAGAATTTGTTAATTGAGTATTGAAGAAATTGGTGTTTTGTCTGGGTAATGTCTGGGTTAAGAATTGTGTCATATTTATAATGTATTATTGACTTGCTGATGGATGTCAATTAGCCTAGTTGGTAAAGTCTTTTGGGGTAGTATTCGAAATGGAATCCCTTCTACATCATTATGTAGTTGACTTGTGAAAACTAGGTACTTCTGCTATACCTTCAGTTAATTTGTTTTGGCTGAAATTTTCCATCTGAATTGAAGAAATTTGTTTCTATGTGTTTAAGGTGGTTTAGCAGTAATGCATTGTGGGAGTTTTTTTTGGTAAAACCCTGAATTAATTAGCCAATGCAGTTGATGGTAGAGGATAGGAAGAATGTTGCTAATTGCACTTTTTGTTGCCTTGTGATTCATTGTTCTGTGGCTTAAAAGATGGAGGTTTTAGACTTTCTTTGCATTTTACTTGTATTAACTTAACTCGGTTACTAGCAATATTTCCCATGTCATTACCGCAAGGGTGTGAATTGCTGGTTAAGTTTGGGAGAAACAACTGGTGGTTATGGGTGAAGATTGAAAGATGGAATGAGCATGGCTTTCTTCTTGGATGCACTTTAAGTGTTTTTAAGTGTCATAATATCTTTGTGAGACTTAGGTATGGGTAATATGGGTTGAAAATTCCAACTTGTGAGAATGACAATTCATTTGTTTAGAACTATCTTATTCACATTGGCTTGTTTAGTTGTTTGCATATAAAAATTGAATGAAAGAGGTGTAAGATAATCTCAATTTATTATGGGTTACTTCATATTACTGTATTGGTTGTTTTGCGTGGTTGATAATTGCTATCATAGCATATTTGATTGAGGTCACCCCAGCTCACTACAATCAAACAACCAATAATGGACAACGATAATAATTAATGCGGAAGAAATAAAATTGCAATAAACATAAGGTAATAATACTTGGAAAACACATTCGATGTGAATAGTAAAAACCACGGAACTTGTGAGGAGTCCAACGTTTCTTCTTCTCTTATTATGATAACTTTGGGCAAAAGAAACTTAACTCCGTTCTACAAAGGTTTTACAACCCTTTAACAAGTTCATCCATAAGAGACCAACAATTGAAGAGGTGAAGATGAAAAATATTACCAAAACACAGATGTTTTGTCCAGTTGCAATTCCCGGGAAACCAAAGTTCCAAATGACAATCTTAACGGTCAGAATGAAGCCAATGGCACCATGATTACTCTTCCTATAATAAATTTTCCTCTCCTTCTTTTGTGTGTTCTACTTTCAAACTTCCTGCTTCCCTATTTTCACTTGTATCAGCTCACACACTCCAAAAAGCTTCTTTCGGAAGCCAATATATATAGTCCAAAGTGGACTGAAAACATTCCTCGGTATTTTGGGTTCACTAACACAAGATAAAACAATTGCCTATGCAACAAGTGTGCTCGACCCACAACAAGAGTTGATCTTCAAGTACTTGTTCAATCCGGATAAAGCTAAGTGGGAAGCAGTGAAGTGGATCTTATAATAGTGAGGTACCTCCAAATTGAGTTTCTGTTATGGACAGTATATGAAAAAGTGCGCCTAGGTGATGAGGTGCTAGGGGATAAGCGCTTTTTTAGTTCTAGGCGATGCACATTCAAAGAAGCAAGAAGCGCACCCGAGGCACATATGGGGCACGCAAGAGGCGCACTTCAGTTAGATTTTTTGAACTTTAAGCACAGCGTGCATTAAGACCCCTTATTGCCTTGATTGGCTTTGAGCTTTTTTATACACTGGTTATGGGGGTGGGAAAACTTATACATAAAGGTTACTGATGCAACATGGGCGGTTGATTGTAAGCAACAAAATGTCTAGATGTATAACATGACCCAAAACCGAGGAACAGTATATTGTCGCCATGGAAGCAAGTACAGAGATGTTATGGTTTAATGACTCATTTGGTAGGCGACAATAAATGGTGGTAATGGAAACAAACTTGTATTGTAAATTTGTGAGAAAAAAAGTCATATACCAAATCCCATGGTTATGCTAATTCATCAGAAGTATCACATTTTCTTCATAAATCTTTATTACCTACCATTACTATTTGTGGTGGTATTGGGTTGGGATGAAAATTTAAGAAGAAAAACACAAGTTTGGGATGTGATTGCATTACCATTGACATTATAATATTACTTTCTGTGCCAAATTGTAATTAGATTCATTCTCATTCCCTCCATTTATTATCGGCTACCAGATGAGTTGTATTTGATTTGAATTTAAGCGAATATGTACTTATGTAGTATTTTTTGATAGTTAGAATGATTTGGATTTCAGCAAGAATGTAAGCATGATGATATTAGGTAATATTGGTTGTGAAATGTGATCAAGGAGTAGAGAATGAGAAAAAAATTCCACATTGACAAAAATGGTGCAAATATGTCGACGAAGGTCGAAGCTAGGTTGAGCTTTGTAGTAAGATTGGTGGGATATCTGGATTGGATGGTTACTCTTGTTGTGGATCTAACCCACGTTTTGCACAAGTCTATGTCATGTGTTAAAGTACCCAAAATGTTGAGACATGTTTAGTCCATTTTGGAGCAAATGTGTTGACTTCCAAAAGAAGCTGTGGAGTGTGAGAGGTGATATCCTAAGGTGAGAATAGGGCAGCACCAAATTTAGGCACCGAGATTAGAACATAACACACAATAGAAAGAAAGGAGAGGTGGGGAGTTTTAAAGTAGTCACCTTGCTGTTTTCAGAGAGTACAGAGGAGCAATCTTGGTCCATTTATGCTGTAAATTTGACAGCTTGTTAGGAACTCACTGGCCTTCCTTCTGATGTTGGGATTTTCGTTTGAAGATCTAGCCCGTCAGGTATTGCAGTAACATTCAAGTTTTGATGATATTCTTCATCTTTAGCTACTCAATTAGTCAATTGTGGTTTCTTACGTATGAACTTGTTGGTGGGTTGTGAAACCTTTGTAACCGAGTTGGTTTTCTTTTTCCTATCACTTCATCATAATAAGAGAAGAAATGGTGGATTTCTCATAAGTCCCGTGGTTTTAACTCTTCACATCGGAAGGTTTTTTCACGTATAACTATGGTGTGTTGATTGCAACTTTATTTGTTCCTGATTAGTTGTTATTGGTGTCCATTGTTGGTTGTATTGTTTAGTTGATTGTCTTGGAGTTTATCTTTGAGGGTATTTGATATACTACTTGGATTCTATATATTTGGGGATCAAGGTCCCTCAATACTTACTAGCTCTTATCCATTCGCGCCGTGTTCAAGTGGTTTGTTATTTCTCTTTTTAGGTATTGGATCTGAAATTGGTGCCAGTGTGCCACATGACTTCATGAGGCATCAGCAAGCCCTTGTTTCATCACAAAAAGTAGAAAAAAAAAGTTAAATTTGATTATGTGATTGCTTAGAGTACATCTATTTTAAGGATTTTCTTTTCAGAGGCTCGTGTCAAATAAAATTGATTTGGTTTTTTGACAGAGCAAGTCTCTTGTGGCTACTGCCGCAGTTCCGGAAGCACACCGGAAAGCTCAGCTATACCAGACGAATCTTCTGCTTTACCACACTAAATTCAATTTGAAAAGTTTATAACACATTCTTTTTTCCAATACGATCAGATCAATCTCAATATTTCTCGCTTACTGCTCATTCGACATGAATGTATAGGTATCAGTGTATCACACAGATTTGGAACCATACCCGTCTTTACCCAAAAGAAAGGCAATTCTAAGTTGCTAATAGGTGTGAGTATCAAGTATTGTGATGCTTAAGAAGGCTTATGTGGGTCTTTAGGGGAGTTAAAGCATCTTTCAAAAGCTAGGGCTATTCTGCTTTTAAAACTCTCTGCTCAAATGTTGCTTAAATGTCAATGTTGAGTTCATGCTTATCTATGGTTTGCCTGCATATGAAACGGGATGATTAAATGCGGATGACCCTTTGTTGATTGCAGGATTATCCTTGGGATTGGACTTAACATCAAACACTGGAGTCAGTACTGATAGATGCCGCCGGTTTGTGGTGAGGGCTGGAAAGGCAGCTCTTTGTCTAACCAAGAGAAGCAGATCTAGGAAGTCATTGGCTCGGACACATGGTTTTCGTCTGCGAATGAGCACAACTAGTGGAAGAGCTCTGTTAAAGCGTAGACGTGCAAAGGGACGCAAAATTCTCTGCACTAAGACAAATCCAAGCAGCGGGAAACGAGCCAGTCCTTAAGTATGAGTGTCTGGGATGTATATTTTTTTTGACTGTAAACTTTATGTTGATGTCAAAGTATTTCCTGTAAACTTGATTTTAATGTCAAATTATTTCCTGTAAACTTTTCCTCTCTTAGTTTGACAGTTCCTGACCTCCTGCGACCTGCTTAGGAGGGTGTTAATGAGCCGAGCTGAGACCGAGCCTTTCTAGGCTCGGCTCGAGTTCGAAATTTGTTTGCACGGGCTCGGCTCGAGCTCGTTGAGCCTGGGAAATTGGGCTCGAGCTCGAGCTCGAATTATGAATACCGAACTCGGTTTGGCTCAAAACTCGATAGGCTCGCTCGAGATTGATAATTAAATGTTTAATTAAGAAACATGTTAATCAATTTTTTCATGTTTTGTATGCTAAAAATAAATATCTATTAAAATTAATTTATGCAAAAA

mRNA sequence

CAGCTACAATAAACTCGATAAGGTTCCCTTTCCCTCTTCTCTTTTTCTCACAAAGATAAGTAAGAGAGAGAATTTCTCATTTCTCACAACAAGAACAAGGAGATAACAACAATGGCGACGCTTTCATTGCTCTCAACTGGGGTTGGAGCAGCCATAACCAACCGTACTCCTTCAGCTTCCCTCACTTTTATCACTGGTTCAAGAACAACCAACAAAAGGGTGTCCTTTAACGGCGGTTCAGCTCGTTCCGGGTCACTCCATTGCTCTTTCTTGGCTCCTTCATCTTCTCTCTCCTCCAACTTCTCAGGATTATCCTTGGGATTGGACTTAACATCAAACACTGGAGTCAGTACTGATAGATGCCGCCGGTTTGTGGTGAGGGCTGGAAAGGCAGCTCTTTGTCTAACCAAGAGAAGCAGATCTAGGAAGTCATTGGCTCGGACACATGGTTTTCGTCTGCGAATGAGCACAACTAGTGGAAGAGCTCTGTTAAAGCGTAGACGTGCAAAGGGACGCAAAATTCTCTGCACTAAGACAAATCCAAGCAGCGGGAAACGAGCCAGTCCTTAAGTATGAGTGTCTGGGATGTATATTTTTTTTGACTGTAAACTTTATGTTGATGTCAAAGTATTTCCTGTAAACTTGATTTTAATGTCAAATTATTTCCTGTAAACTTTTCCTCTCTTAGTTTGACAGTTCCTGACCTCCTGCGACCTGCTTAGGAGGGTGTTAATGAGCCGAGCTGAGACCGAGCCTTTCTAGGCTCGGCTCGAGTTCGAAATTTGTTTGCACGGGCTCGGCTCGAGCTCGTTGAGCCTGGGAAATTGGGCTCGAGCTCGAGCTCGAATTATGAATACCGAACTCGGTTTGGCTCAAAACTCGATAGGCTCGCTCGAGATTGATAATTAAATGTTTAATTAAGAAACATGTTAATCAATTTTTTCATGTTTTGTATGCTAAAAATAAATATCTATTAAAATTAATTTATGCAAAAA

Coding sequence (CDS)

ATGGCGACGCTTTCATTGCTCTCAACTGGGGTTGGAGCAGCCATAACCAACCGTACTCCTTCAGCTTCCCTCACTTTTATCACTGGTTCAAGAACAACCAACAAAAGGGTGTCCTTTAACGGCGGTTCAGCTCGTTCCGGGTCACTCCATTGCTCTTTCTTGGCTCCTTCATCTTCTCTCTCCTCCAACTTCTCAGGATTATCCTTGGGATTGGACTTAACATCAAACACTGGAGTCAGTACTGATAGATGCCGCCGGTTTGTGGTGAGGGCTGGAAAGGCAGCTCTTTGTCTAACCAAGAGAAGCAGATCTAGGAAGTCATTGGCTCGGACACATGGTTTTCGTCTGCGAATGAGCACAACTAGTGGAAGAGCTCTGTTAAAGCGTAGACGTGCAAAGGGACGCAAAATTCTCTGCACTAAGACAAATCCAAGCAGCGGGAAACGAGCCAGTCCTTAA

Protein sequence

MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLSSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRASP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03518.1Spo03518.1mRNA


Homology
[Close]
BLAST of Spo03518.1 vs. NCBI nr
Match: gi|14285713|sp|P82244.1|RK34_SPIOL (RecName: Full=50S ribosomal protein L34, chloroplastic; AltName: Full=CL34; Flags: Precursor)

HSP 1 Score: 275.0 bits (702), Expect = 7.800e-71
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60

Query: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120
           SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST
Sbjct: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120

Query: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 153
           TSGRALLKRRRAKGRKILCTKTNPSSGKRASP
Sbjct: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 152
[Close]
BLAST of Spo03518.1 vs. NCBI nr
Match: gi|731350062|ref|XP_010686315.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.8 bits (460), Expect = 9.000e-43
Identity = 112/152 (73.68%), Postives = 121/152 (79.61%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLS++S     A+ NRT S S     G  T  K V+FNG   RSGSLHCSFLAPSSSL
Sbjct: 1   MATLSMVSWLSTGAVINRTSSVS-----GKPT--KSVTFNGAFTRSGSLHCSFLAPSSSL 60

Query: 61  SS-NFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMS 120
           SS +FSGLSLGLDL SN G   +RCRR VVRAGKAALC TKRSRSRKSLARTHGFRLRM 
Sbjct: 61  SSTSFSGLSLGLDLASNRGAGANRCRRLVVRAGKAALCQTKRSRSRKSLARTHGFRLRMR 120

Query: 121 TTSGRALLKRRRAKGRKILCTKTNPSSGKRAS 152
           TTSGRA+L+RRRAKGRKILCTK+NPSSGKR S
Sbjct: 121 TTSGRAVLQRRRAKGRKILCTKSNPSSGKRVS 145
[Close]
BLAST of Spo03518.1 vs. NCBI nr
Match: gi|595873877|ref|XP_007212058.1| (hypothetical protein PRUPE_ppa011477mg [Prunus persica])

HSP 1 Score: 170.2 bits (430), Expect = 2.700e-39
Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 1 

		  

Query: 19  TPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLS--SNFSGLSLGLDLTSN 78
           TPSASLTF+TGSRT+   VS N  + RS  LHCSF+ PSSSLS  S+FSGLSLGLDL+S+
Sbjct: 77  TPSASLTFLTGSRTSKSSVSLNAATPRSSLLHCSFV-PSSSLSFPSSFSGLSLGLDLSSS 136

Query: 79  TGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRK 138
            GV   R    VV+AGKAALCLTKR+RSRKSLARTHGFR RM TT GRA+LKRRRAKGRK
Sbjct: 137 IGVGRRRSSGLVVKAGKAALCLTKRNRSRKSLARTHGFRRRMRTTGGRAMLKRRRAKGRK 196

Query: 139 ILCTKTNPSSGKRA 151
           ILCTKTNP+SGKRA
Sbjct: 197 ILCTKTNPNSGKRA 209
[Close]
BLAST of Spo03518.1 vs. NCBI nr
Match: gi|470115486|ref|XP_004293930.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 164.1 bits (414), Expect = 1.900e-37
Identity = 104/154 (67.53%), Postives = 118/154 (76.62%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLS +S     +    T SASLTF+TG RT+   VS N  ++RS  LHCSF+ PSSS 
Sbjct: 1   MATLSAISWSPSLSTRPTTTSASLTFLTGRRTS---VSLNVAASRSSLLHCSFI-PSSSA 60

Query: 61  S----SNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRL 120
           S    S+FSGLSLGLDL+SN GV   R    VVRAGKAALCLTKR++SRKSLARTHGFR 
Sbjct: 61  SLSSPSSFSGLSLGLDLSSNIGVGRRRGSGLVVRAGKAALCLTKRNKSRKSLARTHGFRR 120

Query: 121 RMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 151
           RM TTSGRA+LKRRRAKGRK+LCTKTNP+SGKRA
Sbjct: 121 RMRTTSGRAMLKRRRAKGRKVLCTKTNPNSGKRA 150
[Close]
BLAST of Spo03518.1 vs. NCBI nr
Match: gi|657959798|ref|XP_008371452.1| (PREDICTED: 50S ribosomal protein L34, chloroplastic [Malus domestica])

HSP 1 Score: 160.2 bits (404), Expect = 2.800e-36
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSA--RSGSLHCSFLAPSS 60
           MA++S +      +    TP ASLTF+TGS T    VS +GG+A  RS  LHCSF++ SS
Sbjct: 1   MASVSAMXWSPYLSTRASTPCASLTFLTGSTTRKSSVSLSGGAAAARSXLLHCSFISSSS 60

Query: 61  SLSSN-FSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLR 120
             S++ FSGLSLGLDL+S+ GV   R    VVRAGKAALCLTKRSRSRKSLARTHGFR R
Sbjct: 61  IASTSAFSGLSLGLDLSSSVGVGRRRGSGLVVRAGKAALCLTKRSRSRKSLARTHGFRRR 120

Query: 121 MSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 151
           M TT GRA++KRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 MRTTGGRAMMKRRRAKGRKVLCTKSNPSSGKRA 153
[Close]
BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073030 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.400e-71
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60

Query: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120
           SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST
Sbjct: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120

Query: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 153
           TSGRALLKRRRAKGRKILCTKTNPSSGKRASP
Sbjct: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 152
[Close]
BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BX49_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181800 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.200e-43
Identity = 112/152 (73.68%), Postives = 121/152 (79.61%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLS++S     A+ NRT S S     G  T  K V+FNG   RSGSLHCSFLAPSSSL
Sbjct: 1   MATLSMVSWLSTGAVINRTSSVS-----GKPT--KSVTFNGAFTRSGSLHCSFLAPSSSL 60

Query: 61  SS-NFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMS 120
           SS +FSGLSLGLDL SN G   +RCRR VVRAGKAALC TKRSRSRKSLARTHGFRLRM 
Sbjct: 61  SSTSFSGLSLGLDLASNRGAGANRCRRLVVRAGKAALCQTKRSRSRKSLARTHGFRLRMR 120

Query: 121 TTSGRALLKRRRAKGRKILCTKTNPSSGKRAS 152
           TTSGRA+L+RRRAKGRKILCTK+NPSSGKR S
Sbjct: 121 TTSGRAVLQRRRAKGRKILCTKSNPSSGKRVS 145
[Close]
BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Match: M5WHG7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011477mg PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.900e-39
Identity = 100/134 (74.63%), Postives = 111/134 (82.84%), Query Frame = 1 

		  

Query: 19  TPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLS--SNFSGLSLGLDLTSN 78
           TPSASLTF+TGSRT+   VS N  + RS  LHCSF+ PSSSLS  S+FSGLSLGLDL+S+
Sbjct: 77  TPSASLTFLTGSRTSKSSVSLNAATPRSSLLHCSFV-PSSSLSFPSSFSGLSLGLDLSSS 136

Query: 79  TGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRK 138
            GV   R    VV+AGKAALCLTKR+RSRKSLARTHGFR RM TT GRA+LKRRRAKGRK
Sbjct: 137 IGVGRRRSSGLVVKAGKAALCLTKRNRSRKSLARTHGFRRRMRTTGGRAMLKRRRAKGRK 196

Query: 139 ILCTKTNPSSGKRA 151
           ILCTKTNP+SGKRA
Sbjct: 197 ILCTKTNPNSGKRA 209
[Close]
BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KI92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519510 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.500e-36
Identity = 106/156 (67.95%), Postives = 118/156 (75.64%), Query Frame = 1 

		  

Query: 1   MATLSLLSTG--VGAAITNRTPSASLTFITGSR--TTNKRVSFNGGSARSGSLHCSFLAP 60
           MA +S+LST      AI  R PSASL F TGSR   +    + N  SARSG LHCSFL P
Sbjct: 1   MAAISVLSTPWVSTGAIAVRVPSASLVFSTGSRGYCSVSLNTVNNNSARSGLLHCSFL-P 60

Query: 61  SSSLS--SNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGF 120
           SSSLS  S+FSGLSLGLD +S  GV   + R  VVRAGKAALC TKR+RSRKSLARTHGF
Sbjct: 61  SSSLSCSSSFSGLSLGLDWSSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGF 120

Query: 121 RLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 151
           R RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Sbjct: 121 RRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA 155
[Close]
BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Match: B9S989_RICCO (50S ribosomal protein L34, chloroplast, putative OS=Ricinus communis GN=RCOM_1014630 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.700e-35
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 1 

		  

Query: 16  TNRTPSASLTFITGSRTTNKRVSFN---GGSARSGSLHCSFLAPSS-SLSSNFSGLSLGL 75
           T R PSASL+  TG+R  NK  S N     ++RSG LHCSFL+ SS SLSS+FSGLSLGL
Sbjct: 24  TARCPSASLSLSTGTRPRNK-FSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFSGLSLGL 83

Query: 76  DLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRR 135
           DL S+TGV   R    VVRAGKAALC TKR+RSRKSLARTHGFR RM TTSGRA+LKRRR
Sbjct: 84  DLNSSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRR 143

Query: 136 AKGRKILCTKTNPSSGK 149
           AKGRK+LCTK+NP+SGK
Sbjct: 144 AKGRKVLCTKSNPNSGK 159
[Close]
BLAST of Spo03518.1 vs. ExPASy Swiss-Prot
Match: RK34_SPIOL (50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea GN=RPL34 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 4.900e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

		  

Query: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60
           MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL
Sbjct: 1   MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSL 60

Query: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120
           SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST
Sbjct: 61  SSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMST 120

Query: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 153
           TSGRALLKRRRAKGRKILCTKTNPSSGKRASP
Sbjct: 121 TSGRALLKRRRAKGRKILCTKTNPSSGKRASP 152
[Close]
BLAST of Spo03518.1 vs. ExPASy Swiss-Prot
Match: RK34_ARATH (50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.000e-30
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 1 

		  

Query: 4   LSLLSTGVGAAITNR------------TPSASLTFITGSRTTNKRVSFNGGSARSGSLHC 63
           ++ LST V A+ ++R             PSASL+  TG R ++  ++    SA S  LHC
Sbjct: 1   MASLSTSVVASASSRLWNPAASNGKICVPSASLSLRTGCRRSSSSLT---SSASSQLLHC 60

Query: 64  SFLAPSSSLSSNFSGLSLGLDLTSNT-GVSTDRCRRFVVRAGKAALCLTKRSRSRKSLAR 123
           SFL+   SL+S FSGLS+  DL+S T G++  R R  VVRAGKAALC TKRSRSRKSLAR
Sbjct: 61  SFLSSPVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLAR 120

Query: 124 THGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 151
           THGFR RM TTSGRA +KRRRAKGR  LC K+NPSSGKRA
Sbjct: 121 THGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157
[Close]
BLAST of Spo03518.1 vs. TAIR (Arabidopsis)
Match: AT1G29070.1 (Ribosomal protein L34)

HSP 1 Score: 134.4 bits (337), Expect = 5.800e-32
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 1 

		  

Query: 4   LSLLSTGVGAAITNR------------TPSASLTFITGSRTTNKRVSFNGGSARSGSLHC 63
           ++ LST V A+ ++R             PSASL+  TG R ++  ++    SA S  LHC
Sbjct: 1   MASLSTSVVASASSRLWNPAASNGKICVPSASLSLRTGCRRSSSSLT---SSASSQLLHC 60

Query: 64  SFLAPSSSLSSNFSGLSLGLDLTSNT-GVSTDRCRRFVVRAGKAALCLTKRSRSRKSLAR 123
           SFL+   SL+S FSGLS+  DL+S T G++  R R  VVRAGKAALC TKRSRSRKSLAR
Sbjct: 61  SFLSSPVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLAR 120

Query: 124 THGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 151
           THGFR RM TTSGRA +KRRRAKGR  LC K+NPSSGKRA
Sbjct: 121 THGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157
The following BLAST results are available for this feature:
BLAST of Spo03518.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|14285713|sp|P82244.1|RK34_SPIOL7.8e-71100.RecName: Full=50S ribosomal pr... [more]
gi|731350062|ref|XP_010686315.1|9.0e-4373.6PREDICTED: 50S ribosomal prote... [more]
gi|595873877|ref|XP_007212058.1|2.7e-3974.6hypothetical protein PRUPE_ppa... [more]
gi|470115486|ref|XP_004293930.1|1.9e-3767.5PREDICTED: 50S ribosomal prote... [more]
gi|657959798|ref|XP_008371452.1|2.8e-3664.7PREDICTED: 50S ribosomal prote... [more]
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BLAST of Spo03518.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RGW2_SPIOL5.4e-71100.Uncharacterized protein OS=Spi... [more]
A0A0J8BX49_BETVU6.2e-4373.6Uncharacterized protein OS=Bet... [more]
M5WHG7_PRUPE1.9e-3974.6Uncharacterized protein OS=Pru... [more]
A0A0A0KI92_CUCSA2.5e-3667.9Uncharacterized protein OS=Cuc... [more]
B9S989_RICCO3.7e-3570.850S ribosomal protein L34, chl... [more]
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BLAST of Spo03518.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK34_SPIOL4.9e-73100.50S ribosomal protein L34, chl... [more]
RK34_ARATH1.0e-3057.550S ribosomal protein L34, chl... [more]
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BLAST of Spo03518.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G29070.15.8e-3257.5Ribosomal protein L34[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34PRODOMPD003101coord: 104..122
score: 0
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 92..140
score: 12
IPR000271Ribosomal protein L34PANTHERPTHR14503FAMILY NOT NAMEDcoord: 1..142
score: 3.3
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 105..139
score: 3.9
IPR000271Ribosomal protein L34TIGRFAMsTIGR01030TIGR01030coord: 105..138
score: 8.4
NoneNo IPR availablePANTHERPTHR14503:SF350S RIBOSOMAL PROTEIN L34, CHLOROPLASTICcoord: 1..142
score: 3.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo148660.76Barchart | Table
Spo236050.75Barchart | Table
Spo010590.67Barchart | Table
Spo149060.66Barchart | Table