Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACAACGCTTAGCTTCTTACCATCTTTTTGAAATAAGAAAACGTATTGAGCTTTCCATTAAAATATCAAAGAAAGACAATGACTAGCAAGGGCCAGAAATTCCCACCCCAAACTCAGGAAAAACCTGGCAAACAGTTTTTGATGAATCCACTCCCTAAGTCCGTCAATCCTCAATACAAACCTTCCAAAAAGCTTCACGTAAGACATGCTTTCTCTTTTATTTCTTCGGTTTCTTTTATCAAAATTTATATCTTGTTCCTATTTACTACTCCCTCTATATTTTAAAAATAGATACACTTTCTTTAAACGTCCGTATTTTATAAAGAGCTACACTTTCCTTTTTTGACATGTTTCTCAATTACGGAGTATATAAATATTTTTTTTTTTTTGTGGTCCCCACATTTACTCACATCATCTTTTTACTATAATAAATAATTCACTCACTATCTCACTTTCAAGTTATTTTAATAAATTCAATTCACTCTCCTAAAACTATATGCCGGTCAAAGTGTATCTCTTTTTAAAATAAGGAGGGAGTAACTTCTTTTTTATAAAGATCTCGTTACTATTTGCACAAATATTAAGACAAAAGTAGAAAAGTTGGTTGAATATAATAAAATATGGATAAAATAATATAAATGTGTAAAGATGTGGGTGAGTGTAAGAAAAAAATTAATAAAGTAAAAGAAAGTGAGTGAAAAATTGTAAATATTATGGGTAAGAATAGTAAGGTAGTAAATTTACATGTCCAAAGAATTAAACAAAGTGTAAAGAACATTATGAAAACCGACTAAAACGGAAAATGTAAAGACATTTTGAAACGGATGTATATAGGACACCACAAGAGTGGTATCGGTGGTTCGATATTACTATCAGTAATTTTGAGTTTTTTGTTTTGAAAGTCGTGTGATTAGATTTATTTCCGGAGTAAAAATAGTCATACCTATATAGTAATCCGGTTGGTTTTAAACAATGACAACAAAATATAGTAAATTGTTTTTTATGGGTTTCATATTTTAGTTTTTAGTTTTATAAAAATACAGAAAAATGAAAAGAAAAAAAAAACGATACCGAACAAACTCTTAGATACTCCCTCCTTTTTATTTTTAACTCACATTCCTAAACTATGAACGTGTTCGCATTAGCGTTTGAGGTAGCGGGTAGTTTTTTGACCTACAGCTTGTTCGGCAGTAGCGTTTGAGGTAGCAGGTAGCGTTTTAACCTATTTAAGACGCTACTTGTAAAATTCGTACGTAAGTGTTTGACAAGGTAGTGGTTTAGTGGCGGTTAGCGGTGTTGGATAACTTCTGTCAAACGTTAAAATGAGTAGCGTTCCAAAAGTAGCAAGTAGTGTTTGATAAATTTATATTAAAGTTTTAGATAAAAAATATATATTTTATTGTATTTTACAATATTATACCTAAGACAGTACATACGTTATTGTTGCAGGGAAAGGTGGCATTAGTAACTGGAGGAGATTCGGGGATAGGAAGAGCAGTGTGTTACTATTTTGCGCTGGAGGGTGCAACTGTTGCCTTCACTTATGTTAAAGGCCCAGAGGATAAAGATGCAGAAGATGCTTTGGAATTGATAAGAAAGGCAGCCAATGAAAATGAAGCAGGCGAACCGATTGCCATTCCTGTCGATTTCAGCCGAGGTGAAGATGAATGCAAGGATTTGGTGGAGAAGGTTGTGAAGAAATTCAAACGCATCGATGTCTTAGTTAATAACGCAGGAACTCAATATTTCACAAACAATATTGAAGATATATCTGAGAAGCAAATAAGATTATCTTTTGAAATCAACTTTTTTGCCCCATTCTTTTTGGCAAAGTGAGTGCATTATATTTTCACTTGACCTTTACTGAACTTAAATACTTTCTGTAAAAATCTTGATGCATATATATATATATGTTCCATAATGGTGCAGACATTCACTTAAGTACATGAAAGAAGGTGGAAGCATCATTAACACAGTATCTGTTGTGGCATACCGAGGTGAAGAAAAACTACTTGACTATAGTTGCACCAAAGGAGCCCTTGTTACCTTCACCAGAAGCCTCGGTGTCCAACTTATTAACCGAGGAATTAGGGTTAATGGTGTTGCACCCGGCCCGATTTGGACTCCCCTACATGTTGCTTCACTGCCTGTGGAAAGAAATGTGAGCTTAGGTTCATATGCGCCTATGGATAGAGCTGCAGAGCCTTTTGAAGTCGCACCATCTTATGTTTTCCTCGCGAGCAACGAGTGTTCATCTTATTTCACCGGTCAAGTTCTCCATCCTAATGGTATGCTACTTGTGTTAGTTCTTGTTTCTACCCATTCGTTCTCGTTTACATAATGTAAATCTTTCAACCTAAAGATTAACTAGCACGTTATTGCACCAATAAAAAAAACTACTATCTCGTTTACGCTTTTTATTTTACTCTGTTTCATAATGATTTTACATTGTGTTTTATTATATTTTTTGACATAAAAATTACTATCTTACCCCTCTTAACCCACAACATTTACAACTTTTCATTTAATTTCTCTTACTTTATTAAAAAAAATATTCTTACACCTACCTACCTTTATATATACCCACTTTTTCTATTTTTTCTTAATATTTATGTAAATAATAATCGTAAAATCATTTGAAACAGATGTAGTAATTTTTATACATATAAGAATATACTAACTAGGTTGTGTTTCAGGTGGGTTGGTCGTCAATGCATAATCCAAGTGTGTCGTTTGTCAAGATATAATCCAATAAAGAACATGAGAGGCAACGCCTAAGTTCAAACAAATAATAACATTCTATGCAAAACATGGTTCAATTAATTAATAAAAGATGCTTTTCGTTTCGAATAAGGTCATGCTTCCGGTTCAAGATGCTTGCTTGTTGGCTGGTCGAACTAGAATTAAGATGGCCACTTCGTTTTTTATGTTTTATGCTGTTATCATATCCTTGTACCGTATGCAATAATATTTGTGTACCGTACTCTTTGGAGTACCTTAATATATAAATAAAGTTGGGATATTTCTTTCATATGAGACTTTTAATTTACTTTTGTTTTATTGGCCC ACAACGCTTAGCTTCTTACCATCTTTTTGAAATAAGAAAACGTATTGAGCTTTCCATTAAAATATCAAAGAAAGACAATGACTAGCAAGGGCCAGAAATTCCCACCCCAAACTCAGGAAAAACCTGGCAAACAGTTTTTGATGAATCCACTCCCTAAGTCCGTCAATCCTCAATACAAACCTTCCAAAAAGCTTCACGGAAAGGTGGCATTAGTAACTGGAGGAGATTCGGGGATAGGAAGAGCAGTGTGTTACTATTTTGCGCTGGAGGGTGCAACTGTTGCCTTCACTTATGTTAAAGGCCCAGAGGATAAAGATGCAGAAGATGCTTTGGAATTGATAAGAAAGGCAGCCAATGAAAATGAAGCAGGCGAACCGATTGCCATTCCTGTCGATTTCAGCCGAGGTGAAGATGAATGCAAGGATTTGGTGGAGAAGGTTGTGAAGAAATTCAAACGCATCGATGTCTTAGTTAATAACGCAGGAACTCAATATTTCACAAACAATATTGAAGATATATCTGAGAAGCAAATAAGATTATCTTTTGAAATCAACTTTTTTGCCCCATTCTTTTTGGCAAAACATTCACTTAAGTACATGAAAGAAGGTGGAAGCATCATTAACACAGTATCTGTTGTGGCATACCGAGGTGAAGAAAAACTACTTGACTATAGTTGCACCAAAGGAGCCCTTGTTACCTTCACCAGAAGCCTCGGTGTCCAACTTATTAACCGAGGAATTAGGGTTAATGGTGTTGCACCCGGCCCGATTTGGACTCCCCTACATGTTGCTTCACTGCCTGTGGAAAGAAATGTGAGCTTAGGTTCATATGCGCCTATGGATAGAGCTGCAGAGCCTTTTGAAGTCGCACCATCTTATGTTTTCCTCGCGAGCAACGAGTGTTCATCTTATTTCACCGGTCAAGTTCTCCATCCTAATGGTGGGTTGGTCGTCAATGCATAATCCAAGTGTGTCGTTTGTCAAGATATAATCCAATAAAGAACATGAGAGGCAACGCCTAAGTTCAAACAAATAATAACATTCTATGCAAAACATGGTTCAATTAATTAATAAAAGATGCTTTTCGTTTCGAATAAGGTCATGCTTCCGGTTCAAGATGCTTGCTTGTTGGCTGGTCGAACTAGAATTAAGATGGCCACTTCGTTTTTTATGTTTTATGCTGTTATCATATCCTTGTACCGTATGCAATAATATTTGTGTACCGTACTCTTTGGAGTACCTTAATATATAAATAAAGTTGGGATATTTCTTTCATATGAGACTTTTAATTTACTTTTGTTTTATTGGCCC ATGACTAGCAAGGGCCAGAAATTCCCACCCCAAACTCAGGAAAAACCTGGCAAACAGTTTTTGATGAATCCACTCCCTAAGTCCGTCAATCCTCAATACAAACCTTCCAAAAAGCTTCACGGAAAGGTGGCATTAGTAACTGGAGGAGATTCGGGGATAGGAAGAGCAGTGTGTTACTATTTTGCGCTGGAGGGTGCAACTGTTGCCTTCACTTATGTTAAAGGCCCAGAGGATAAAGATGCAGAAGATGCTTTGGAATTGATAAGAAAGGCAGCCAATGAAAATGAAGCAGGCGAACCGATTGCCATTCCTGTCGATTTCAGCCGAGGTGAAGATGAATGCAAGGATTTGGTGGAGAAGGTTGTGAAGAAATTCAAACGCATCGATGTCTTAGTTAATAACGCAGGAACTCAATATTTCACAAACAATATTGAAGATATATCTGAGAAGCAAATAAGATTATCTTTTGAAATCAACTTTTTTGCCCCATTCTTTTTGGCAAAACATTCACTTAAGTACATGAAAGAAGGTGGAAGCATCATTAACACAGTATCTGTTGTGGCATACCGAGGTGAAGAAAAACTACTTGACTATAGTTGCACCAAAGGAGCCCTTGTTACCTTCACCAGAAGCCTCGGTGTCCAACTTATTAACCGAGGAATTAGGGTTAATGGTGTTGCACCCGGCCCGATTTGGACTCCCCTACATGTTGCTTCACTGCCTGTGGAAAGAAATGTGAGCTTAGGTTCATATGCGCCTATGGATAGAGCTGCAGAGCCTTTTGAAGTCGCACCATCTTATGTTTTCCTCGCGAGCAACGAGTGTTCATCTTATTTCACCGGTCAAGTTCTCCATCCTAATGGTGGGTTGGTCGTCAATGCATAA MTSKGQKFPPQTQEKPGKQFLMNPLPKSVNPQYKPSKKLHGKVALVTGGDSGIGRAVCYYFALEGATVAFTYVKGPEDKDAEDALELIRKAANENEAGEPIAIPVDFSRGEDECKDLVEKVVKKFKRIDVLVNNAGTQYFTNNIEDISEKQIRLSFEINFFAPFFLAKHSLKYMKEGGSIINTVSVVAYRGEEKLLDYSCTKGALVTFTRSLGVQLINRGIRVNGVAPGPIWTPLHVASLPVERNVSLGSYAPMDRAAEPFEVAPSYVFLASNECSSYFTGQVLHPNGGLVVNA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03563.1 vs. NCBI nr
Match: gi|902198098|gb|KNA13602.1| (hypothetical protein SOVF_115190 [Spinacia oleracea]) HSP 1 Score: 590.5 bits (1521), Expect = 1.600e-165 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
BLAST of Spo03563.1 vs. NCBI nr
Match: gi|255552293|ref|XP_002517191.1| (PREDICTED: glucose and ribitol dehydrogenase homolog 2 [Ricinus communis]) HSP 1 Score: 386.3 bits (991), Expect = 4.600e-104 Identity = 189/293 (64.51%), Postives = 234/293 (79.86%), Query Frame = 1
BLAST of Spo03563.1 vs. NCBI nr
Match: gi|255552295|ref|XP_002517192.1| (PREDICTED: glucose and ribitol dehydrogenase homolog 2 [Ricinus communis]) HSP 1 Score: 383.3 bits (983), Expect = 3.900e-103 Identity = 187/288 (64.93%), Postives = 230/288 (79.86%), Query Frame = 1
BLAST of Spo03563.1 vs. NCBI nr
Match: gi|743822105|ref|XP_011021590.1| (PREDICTED: glucose and ribitol dehydrogenase-like [Populus euphratica]) HSP 1 Score: 377.5 bits (968), Expect = 2.200e-101 Identity = 184/289 (63.67%), Postives = 233/289 (80.62%), Query Frame = 1
BLAST of Spo03563.1 vs. NCBI nr
Match: gi|902230316|gb|KNA21804.1| (hypothetical protein SOVF_039770 [Spinacia oleracea]) HSP 1 Score: 372.5 bits (955), Expect = 6.900e-100 Identity = 188/250 (75.20%), Postives = 214/250 (85.60%), Query Frame = 1
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R487_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_115190 PE=4 SV=1) HSP 1 Score: 590.5 bits (1521), Expect = 1.100e-165 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 1
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Match: B9RTX2_RICCO (Short chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_0913590 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 3.200e-104 Identity = 189/293 (64.51%), Postives = 234/293 (79.86%), Query Frame = 1
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Match: B9RTX3_RICCO (Short chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_0913600 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 2.700e-103 Identity = 187/288 (64.93%), Postives = 230/288 (79.86%), Query Frame = 1
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSC0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039770 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 4.800e-100 Identity = 188/250 (75.20%), Postives = 214/250 (85.60%), Query Frame = 1
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Match: A0A067L6K5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02128 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 1.400e-99 Identity = 179/294 (60.88%), Postives = 231/294 (78.57%), Query Frame = 1
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1) HSP 1 Score: 345.9 bits (886), Expect = 4.300e-94 Identity = 174/292 (59.59%), Postives = 223/292 (76.37%), Query Frame = 1
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 6.900e-92 Identity = 178/288 (61.81%), Postives = 211/288 (73.26%), Query Frame = 1
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=2 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 6.500e-90 Identity = 174/294 (59.18%), Postives = 212/294 (72.11%), Query Frame = 1
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Match: GRDH_ORYSJ (Glucose and ribitol dehydrogenase homolog OS=Oryza sativa subsp. japonica GN=Os05g0140800 PE=2 SV=2) HSP 1 Score: 300.1 bits (767), Expect = 2.700e-80 Identity = 160/298 (53.69%), Postives = 208/298 (69.80%), Query Frame = 1
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Match: YHXC_BACSU (Uncharacterized oxidoreductase YhxC OS=Bacillus subtilis (strain 168) GN=yhxC PE=3 SV=2) HSP 1 Score: 246.9 bits (629), Expect = 2.700e-64 Identity = 139/291 (47.77%), Postives = 187/291 (64.26%), Query Frame = 1
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Match: AT3G05260.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 338.6 bits (867), Expect = 3.900e-93 Identity = 178/288 (61.81%), Postives = 211/288 (73.26%), Query Frame = 1
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Match: AT1G54870.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 332.0 bits (850), Expect = 3.700e-91 Identity = 174/294 (59.18%), Postives = 212/294 (72.11%), Query Frame = 1
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Match: AT1G52340.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 103.6 bits (257), Expect = 2.100e-22 Identity = 87/268 (32.46%), Postives = 135/268 (50.37%), Query Frame = 1
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Match: AT4G05530.1 (indole-3-butyric acid response 1) HSP 1 Score: 98.2 bits (243), Expect = 8.900e-21 Identity = 76/260 (29.23%), Postives = 129/260 (49.62%), Query Frame = 1
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Match: AT1G24360.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 95.5 bits (236), Expect = 5.800e-20 Identity = 75/258 (29.07%), Postives = 121/258 (46.90%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03563.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03563.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03563.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03563.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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