Spo03615 (gene) | SpinachBase

Overview


Name	Spo03615
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L13, putative
Location	chr2 : 336768 .. 341033 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGACTCTTTATGAAAAACCATAAAAAGCTATTTCTCCCAAATTGGTTCTTTCTCTCTCCTTCAAGGGTTTAACAGTCCCGTCAACTGGCAAAACCTTCCACACTCAAAGCAGCTCGATTTCTCCTCCTTCCTTCAGTTCTTCTTGTATTTCGCTTCAAGATCTGTTCTCAGTTATTCCTTCAAGATGAAGATGGTCACAGGAGCCTTCAATGGCAACATGAAGGTAATCTTTAACACCTCTTTCTTCTTCGTTCTGATTTAATTTTTCACTCTTGGCATTTGCTTCAATTTGTATATTTTATCACTTCGAATTCTGGGTTTTTGTTGGATTCATTGTATGATTTCTGGGTGAAATGTTATTACCCATGTCAGATTTTGGTGTTTTAAACAACCCTTCTATGGAATGCCCGCCAAGTGTTTGTGAAAATGCCCAGAAGAACTATCATTGTTTTCTGTATTTGATGGTTGTTAGGAATACTGCACTGTGGAATAATGGATGATTTTTCAGAAATTTGGTAGCTTTTTTTATTGAATTCGGGAAAATGAGGAGTAATGCCGTGTTTGTGAAAATGCCCAAAATGAGGAGTAATGGATGAATTTCAAAACTTCAATTTTTGGTAAATTTGTTAGCTTTTTGAATTGAATTCGGGAGAATGAGGAGTGAGAAAATGAGGTGCAAGCTATTGGTTGTAAGATCACAATGTTGCTCAATGATGGACGTTTGTGTCAATTGAGGAGTTTATACGTTGCCTTTTTGGTTACGCTTTAGCATCCAAATTATCTGCAGACTCAGGGTTTGCTTACGTAGAGGTATTATGTAATTTACTCAGAAACTATGGTGTGAAGGACCTGAATCTATAAGCCGTGCACTCAAAGCACACAACTTCGCATCACTCATCTCTTTTGTGACTGTAACATGGCTCGTCACAGTCTCTGAAAACCAATCAGGACTAATTACAATATTCTTGAAGTGGGTTCCAATGAATCCGCTGTGAACGTCACAGCGTTCATGATTCCTTTACTTCGGGCGGGGGTCAATCATGGCGTGGGAACTCACCGCAGTAATGAAAATAAAAGGGAGGAATAAGCAATTAGTAGGGAGTTTGGGTTCTCTCTTACATCTAACCTAGGTAAGTATCTTGGGATGATTGTCAGATTGTTGGGCAAAAGTGTAATACTGCTGAGTGTTGGAAGGCACCTGTACACAGAGGAGTGAAATACAAGAAAGTATGACAGCCTATGTTTATATTTGATATTTGATGTTGGTTTGATTATGTCAAAGAATTCATGTTCATTCACCATAGGACTGGTCTGCTCTAATGATTTGGAGTGATGATGTGTTTGTATAGCCTTATGTTGCAATGATTCCCTGATGTATTGGGCTTCATGTGCAGATTCAAGTAGTATAGTAAGTTTTTATGCACCTGTTCACAAACTTTGTTTTTTCTTTGTGCAGAGAGCCCTTGCTGGGTTGAGACGTATTGATTTGGATGGTTTGCGTTGGAGGGTATTTGATGCCAAAGGCCAGGTGAGAACCTTTTTTTTAATACCATTTTATGATTCTATCCCCCCTTCCCGCCTTCCTTCTACTACACTCTGTGCCCTCTGGCATATCTACAGAAATTAGAATTTGCTTCATATGATGATTAAGAAGCTGAGCATTATTTTCAACCAATTCTTGTTGCACGGTAGGCATCTATATTTGTCAGCCACTTAAGAGAGCAATTCCGTTGTTCTTGATTTTATATGAAGAAGTATCGGTGTTTGGATATGTATCCCTATTTTAATTTTTTGATTCCTCTTGAAAATGCACTTTGTCGTGGTTAGCTTTGTCAATCCTATATGTTTAGATGGAAACTGTGTCTTTTGGACTCTTTATTTTTAACCAAACTAGTATCTGTATCGGTCTCTGAAAGAAATATACGAAATAGTCAAACTTCAAACTAGACAAAGAATATGGGGAAATCTATAAACGTACCCAAGTCCAACCCTTCAAAACATCCGATGATACATTACTTGACCTACCCAGTTTTCCACTTCTGTTTTCATCTTTGCTTAACCGTCTTCAGGCTCCTTTCCCCTTCCTCCAATATTGCAGGAAGCTCAAATCTACTGTCTCTTAGTACAGACCTGCTGGCATATGTTTTTGTTTTTCACAAGCCTTCGTGTGGTGTAGATTTGCATTGTTTTCTCTGTAACAATTGCATTGTTTTGGCTTAGGTTCTTGGGAGGTTAGCATCTCAAATATCTACTGTGGTACAAGGGAAAGACAAACCTACATATGCTCCTAATCGTGATGATGGGGATATGTGCGTTGTCCTTAATGCAAAGGACATTTGTGTTACAGGGAGGAAGCTTACAGATAAATATTACCGATGGCACACTGGGTAAGCTCCTAGGATAACTTGGTTATGAATATGATAGACATTATACTGGATGTTGGAAGAATTCTCTCCGAACCTTCTGTCTTCTATCTACTCAAACTTACTGTTATTCACTTAATTTTGAAAGTTCTGTGGATAGCAATGACTTTGTCTGCTGCTTGCCTGTATAAGTTCAAACTATTTGGTTGGGTTTTATGGAGGTTATAGTTTTCAAAGTTCAGACTTCAGACTATATGGGGGGTTCTATGGAGGTTGTATGAAAAGCAGAAAGTAGAAATGAAGATAGGTCTCAGATGTTTGCTATAAACTGGTCTGTAAAGTGGGATTTGAGATCTGGATTTGTCTAATTTCCCTCAAATAACTTGCATATTTTTACTTATGTAACCTTTTTTTTATACTAATATTTGTCTATTTTTGGTTTAATAGGCATGTGGGCCACCTTAAGGAAAGAAGTTTAAAGGATCAGATGGCCAAAGATCCTACTGAAGTTATTCGTAAGGCTGTCCTGCGCATGCTTCCTAGGAACAAATTACGTGATGTGAGTGTTACTTCTTGAGCCTAAAAACTTATTTATGCAATCCGATTGTAGGTCTTATCTTAAAGTTGTTTATTTGCTCATCCTTTATCCCCCCTTTCCTTTCATATTACTTCCTATTTTGCTTATTCAACTAGTTATCTTCTGTGACATGATTCCTAATTTTGGTAGACATGTTTTTAAGAAAAGGGGGATGATGGACTGATGGGAGAATATGCACTTAGGCTACGTTTGGTGGGTGTAAAACGTTTTCATGGAAAACGATTTTCCTTTTTTCAATCATTTTACGTTGTTTGGTTTGGCAAGGGATGGAAAACAATTTTCCATAACTCCCTCAAAGGTGGATAAACATTTTCCATTTGAAAGGAAGGGAAACCGCGTTTCCATCTTTCCTCCTTTCCTCCTTACCTCCATCTTCTTTCTTCCCATCAATCCTCACCCGTCTTCTCGCATTTTCCTTTTTTCTATTTATTTTATTGCAAGGAACCAAACAAAAGAAAACTAGGTTGGAAATTGTGTTTCCTTGAAAAAAGTTTTCCATGTAAAATCAATTTTCACTAAAAACGTTTTACGCCAAACCAAACAAAGCCCTATTCTTGCTATGGCTGTCAGGGCTGTCACTTCTGGCAACAGCTAAAATCACACCATTTTGCTGTTCAGTGAAGGAATCAATCAGAAAAACCTGCTCACTTTTTTACTCTAATGGATGTAGGATAGAGACCGGAAACTTCGGATATTTACCGGTGATGAACACCCATTTGCTGATAAACCCCTTGAGCCATACGTCATGCCTCCTAGACAAGTGCGAGAAATGCGGCCCCGTGCTAAAAGAGCTTTGATTCGTGCACAAAAGAAGACAGAGCAACAACAAGGTGTTCCCACCATGAAAAAGAACAAGAAAGATGAAGAAAAGGCAGAAGTGAGCGCGTGATCGATGGATTCTGAGGCATAATGTTTTTCTAATCAGAAGATCTGATGTATAAACAAGGGTTTCACTCATGAAAAGGAGGGATAATCACAATCAGAGCCAAACTGTGGCTTTGGATGAATTTTGGTTTGGTTTTGTTTTGTTATCATTTGTACTAGTATTGATTACTATGTACTATGTTTTAGAGACTTCTTTTACCTCGACCGTGGTTATATCAGGTCTGTTTATGTTCATTTCAAATAATTTTTTGTTTGAATGAAGTATTCAAACCTTTTGATGTTTCAACTGCATCCTTTTACACTACTAATGTCATGCAAAATGCCTTGGATCCCTGGCATAACATGTAACATGCACTCTTAAGTAGGGGTGTAACCAAGCCGAGCCGAGTACTACCCACTCTAGCTTTCAACTGAGCT

mRNA sequence

TAGGGACTCTTTATGAAAAACCATAAAAAGCTATTTCTCCCAAATTGGTTCTTTCTCTCTCCTTCAAGGGTTTAACAGTCCCGTCAACTGGCAAAACCTTCCACACTCAAAGCAGCTCGATTTCTCCTCCTTCCTTCAGTTCTTCTTGTATTTCGCTTCAAGATCTGTTCTCAGTTATTCCTTCAAGATGAAGATGGTCACAGGAGCCTTCAATGGCAACATGAAGAGAGCCCTTGCTGGGTTGAGACGTATTGATTTGGATGGTTTGCGTTGGAGGGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGTTAGCATCTCAAATATCTACTGTGGTACAAGGGAAAGACAAACCTACATATGCTCCTAATCGTGATGATGGGGATATGTGCGTTGTCCTTAATGCAAAGGACATTTGTGTTACAGGGAGGAAGCTTACAGATAAATATTACCGATGGCACACTGGGCATGTGGGCCACCTTAAGGAAAGAAGTTTAAAGGATCAGATGGCCAAAGATCCTACTGAAGTTATTCGTAAGGCTGTCCTGCGCATGCTTCCTAGGAACAAATTACGTGATGATAGAGACCGGAAACTTCGGATATTTACCGGTGATGAACACCCATTTGCTGATAAACCCCTTGAGCCATACGTCATGCCTCCTAGACAAGTGCGAGAAATGCGGCCCCGTGCTAAAAGAGCTTTGATTCGTGCACAAAAGAAGACAGAGCAACAACAAGGTGTTCCCACCATGAAAAAGAACAAGAAAGATGAAGAAAAGGCAGAAGTGAGCGCGTGATCGATGGATTCTGAGGCATAATGTTTTTCTAATCAGAAGATCTGATGTATAAACAAGGGTTTCACTCATGAAAAGGAGGGATAATCACAATCAGAGCCAAACTGTGGCTTTGGATGAATTTTGGTTTGGTTTTGTTTTGTTATCATTTGTACTAGTATTGATTACTATGTACTATGTTTTAGAGACTTCTTTTACCTCGACCGTGGTTATATCAGGTCTGTTTATGTTCATTTCAAATAATTTTTTGTTTGAATGAAGTATTCAAACCTTTTGATGTTTCAACTGCATCCTTTTACACTACTAATGTCATGCAAAATGCCTTGGATCCCTGGCATAACATGTAACATGCACTCTTAAGTAGGGGTGTAACCAAGCCGAGCCGAGTACTACCCACTCTAGCTTTCAACTGAGCT

Coding sequence (CDS)

ATGAAGATGGTCACAGGAGCCTTCAATGGCAACATGAAGAGAGCCCTTGCTGGGTTGAGACGTATTGATTTGGATGGTTTGCGTTGGAGGGTATTTGATGCCAAAGGCCAGGTTCTTGGGAGGTTAGCATCTCAAATATCTACTGTGGTACAAGGGAAAGACAAACCTACATATGCTCCTAATCGTGATGATGGGGATATGTGCGTTGTCCTTAATGCAAAGGACATTTGTGTTACAGGGAGGAAGCTTACAGATAAATATTACCGATGGCACACTGGGCATGTGGGCCACCTTAAGGAAAGAAGTTTAAAGGATCAGATGGCCAAAGATCCTACTGAAGTTATTCGTAAGGCTGTCCTGCGCATGCTTCCTAGGAACAAATTACGTGATGATAGAGACCGGAAACTTCGGATATTTACCGGTGATGAACACCCATTTGCTGATAAACCCCTTGAGCCATACGTCATGCCTCCTAGACAAGTGCGAGAAATGCGGCCCCGTGCTAAAAGAGCTTTGATTCGTGCACAAAAGAAGACAGAGCAACAACAAGGTGTTCCCACCATGAAAAAGAACAAGAAAGATGAAGAAAAGGCAGAAGTGAGCGCGTGA

Protein sequence

MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTEQQQGVPTMKKNKKDEEKAEVSA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo03615.1	Spo03615.1	mRNA

Homology

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BLAST of Spo03615.1 vs. NCBI nr
Match: gi|902186844|gb|KNA10791.1| (hypothetical protein SOVF_141050, partial [Spinacia oleracea])

HSP 1 Score: 402.5 bits (1033), Expect = 4.300e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP
Sbjct: 40  MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 99

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL
Sbjct: 100 NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 159

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE
Sbjct: 160 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 219

Query: 181 QQQGVPTMKKNKKDEEKAEVSA 203
           QQQGVPTMKKNKKDEEKAEVSA
Sbjct: 220 QQQGVPTMKKNKKDEEKAEVSA 241

[Close]

BLAST of Spo03615.1 vs. NCBI nr
Match: gi|731369308|ref|XP_010696508.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 369.8 bits (948), Expect = 3.100e-99
Identity = 184/202 (91.09%), Postives = 193/202 (95.54%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           MKM TGAFNGNMK+ALAGLRRIDLDGLRWRVFDAKGQVLGRLA+QISTVVQGKDKPTYAP
Sbjct: 1   MKMTTGAFNGNMKKALAGLRRIDLDGLRWRVFDAKGQVLGRLATQISTVVQGKDKPTYAP 60

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMC+VLNAKDICVTGRKLTDKYYRWHTG+VGHLKERSLKDQM+KDPTEVIRKAVL
Sbjct: 61  NRDDGDMCIVLNAKDICVTGRKLTDKYYRWHTGYVGHLKERSLKDQMSKDPTEVIRKAVL 120

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIFTGDEHPF+DKPLEPYVMPPRQVREMRPRA+RALIRAQKK E
Sbjct: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFSDKPLEPYVMPPRQVREMRPRARRALIRAQKKAE 180

Query: 181 QQQGVPTMKKNKKDEEKAEVSA 203
           QQ+   T +KN K EEKA VSA
Sbjct: 181 QQESGTTTRKNGKKEEKAGVSA 202

[Close]

BLAST of Spo03615.1 vs. NCBI nr
Match: gi|976905198|gb|KVH92842.1| (hypothetical protein Ccrd_005100, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 335.5 bits (859), Expect = 6.400e-89
Identity = 165/200 (82.50%), Postives = 185/200 (92.50%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           M + + +FNGN+K+A+AGLRRI+LDGLRWRVFDAKGQVLGRLASQISTVVQGKDKP YAP
Sbjct: 53  MSVASQSFNGNLKKAVAGLRRINLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPIYAP 112

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMC+VLNAKDICVTGRKLTDKYYRWHTG++GHLKERSLKDQMAKDPTEVIRKAVL
Sbjct: 113 NRDDGDMCIVLNAKDICVTGRKLTDKYYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVL 172

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIF+G +HPF D+PLEPYVMPPRQVRE+RPRA+RA++RAQKK E
Sbjct: 173 RMLPRNKLRDDRDRKLRIFSGSKHPFGDRPLEPYVMPPRQVRELRPRARRAMVRAQKKAE 232

Query: 181 QQ-QGVPTMKKNKKDEEKAE 200
           QQ +G   + K KK EE +E
Sbjct: 233 QQEEGGNKISKGKKREEISE 252

[Close]

BLAST of Spo03615.1 vs. NCBI nr
Match: gi|296090245|emb|CBI40064.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 335.1 bits (858), Expect = 8.400e-89
Identity = 166/200 (83.00%), Postives = 183/200 (91.50%), Query Frame = 1


		  
Query: 3   MVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNR 62
           M T +FNGNMK+ALAGLRRI+L+GLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY PNR
Sbjct: 1   MATSSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNR 60

Query: 63  DDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRM 122
           +DGDMC+VLNAKDI VTGRKLT+K+YRWHTG++GHLKERSLKDQ+AKDPTEVIRKAVLRM
Sbjct: 61  EDGDMCIVLNAKDISVTGRKLTNKFYRWHTGYIGHLKERSLKDQLAKDPTEVIRKAVLRM 120

Query: 123 LPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE-Q 182
           LPRNKLRDDRDRKLRIF GDEHPF D+PLEPYVMPPRQVREMRPRA+RA IRAQKK E Q
Sbjct: 121 LPRNKLRDDRDRKLRIFAGDEHPFNDRPLEPYVMPPRQVREMRPRARRATIRAQKKAEQQ 180

Query: 183 QQGVPTMKKNKKDEEKAEVS 202
           QQG    +K +K E + EVS
Sbjct: 181 QQGTTDTRKKRKKEVEPEVS 200

[Close]

BLAST of Spo03615.1 vs. NCBI nr
Match: gi|225452155|ref|XP_002270526.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera])

HSP 1 Score: 335.1 bits (858), Expect = 8.400e-89
Identity = 166/200 (83.00%), Postives = 183/200 (91.50%), Query Frame = 1


		  
Query: 3   MVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNR 62
           M T +FNGNMK+ALAGLRRI+L+GLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY PNR
Sbjct: 1   MATSSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNR 60

Query: 63  DDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRM 122
           +DGDMC+VLNAKDI VTGRKLT+K+YRWHTG++GHLKERSLKDQ+AKDPTEVIRKAVLRM
Sbjct: 61  EDGDMCIVLNAKDISVTGRKLTNKFYRWHTGYIGHLKERSLKDQLAKDPTEVIRKAVLRM 120

Query: 123 LPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE-Q 182
           LPRNKLRDDRDRKLRIF GDEHPF D+PLEPYVMPPRQVREMRPRA+RA IRAQKK E Q
Sbjct: 121 LPRNKLRDDRDRKLRIFAGDEHPFNDRPLEPYVMPPRQVREMRPRARRATIRAQKKAEQQ 180

Query: 183 QQGVPTMKKNKKDEEKAEVS 202
           QQG    +K +K E + EVS
Sbjct: 181 QQGTTDTRKKRKKEVEPEVS 200

[Close]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141050 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 3.000e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP
Sbjct: 40  MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 99

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL
Sbjct: 100 NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 159

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE
Sbjct: 160 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 219

Query: 181 QQQGVPTMKKNKKDEEKAEVSA 203
           QQQGVPTMKKNKKDEEKAEVSA
Sbjct: 220 QQQGVPTMKKNKKDEEKAEVSA 241

[Close]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BA92_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g199050 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.200e-99
Identity = 184/202 (91.09%), Postives = 193/202 (95.54%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           MKM TGAFNGNMK+ALAGLRRIDLDGLRWRVFDAKGQVLGRLA+QISTVVQGKDKPTYAP
Sbjct: 1   MKMTTGAFNGNMKKALAGLRRIDLDGLRWRVFDAKGQVLGRLATQISTVVQGKDKPTYAP 60

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMC+VLNAKDICVTGRKLTDKYYRWHTG+VGHLKERSLKDQM+KDPTEVIRKAVL
Sbjct: 61  NRDDGDMCIVLNAKDICVTGRKLTDKYYRWHTGYVGHLKERSLKDQMSKDPTEVIRKAVL 120

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIFTGDEHPF+DKPLEPYVMPPRQVREMRPRA+RALIRAQKK E
Sbjct: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFSDKPLEPYVMPPRQVREMRPRARRALIRAQKKAE 180

Query: 181 QQQGVPTMKKNKKDEEKAEVSA 203
           QQ+   T +KN K EEKA VSA
Sbjct: 181 QQESGTTTRKNGKKEEKAGVSA 202

[Close]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Match: A0A118JVC4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_005100 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.500e-89
Identity = 165/200 (82.50%), Postives = 185/200 (92.50%), Query Frame = 1


		  
Query: 1   MKMVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAP 60
           M + + +FNGN+K+A+AGLRRI+LDGLRWRVFDAKGQVLGRLASQISTVVQGKDKP YAP
Sbjct: 53  MSVASQSFNGNLKKAVAGLRRINLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPIYAP 112

Query: 61  NRDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVL 120
           NRDDGDMC+VLNAKDICVTGRKLTDKYYRWHTG++GHLKERSLKDQMAKDPTEVIRKAVL
Sbjct: 113 NRDDGDMCIVLNAKDICVTGRKLTDKYYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVL 172

Query: 121 RMLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE 180
           RMLPRNKLRDDRDRKLRIF+G +HPF D+PLEPYVMPPRQVRE+RPRA+RA++RAQKK E
Sbjct: 173 RMLPRNKLRDDRDRKLRIFSGSKHPFGDRPLEPYVMPPRQVRELRPRARRAMVRAQKKAE 232

Query: 181 QQ-QGVPTMKKNKKDEEKAE 200
           QQ +G   + K KK EE +E
Sbjct: 233 QQEEGGNKISKGKKREEISE 252

[Close]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Match: F6I5K7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00250 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 5.900e-89
Identity = 166/200 (83.00%), Postives = 183/200 (91.50%), Query Frame = 1


		  
Query: 3   MVTGAFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNR 62
           M T +FNGNMK+ALAGLRRI+L+GLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY PNR
Sbjct: 1   MATSSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNR 60

Query: 63  DDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRM 122
           +DGDMC+VLNAKDI VTGRKLT+K+YRWHTG++GHLKERSLKDQ+AKDPTEVIRKAVLRM
Sbjct: 61  EDGDMCIVLNAKDISVTGRKLTNKFYRWHTGYIGHLKERSLKDQLAKDPTEVIRKAVLRM 120

Query: 123 LPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTE-Q 182
           LPRNKLRDDRDRKLRIF GDEHPF D+PLEPYVMPPRQVREMRPRA+RA IRAQKK E Q
Sbjct: 121 LPRNKLRDDRDRKLRIFAGDEHPFNDRPLEPYVMPPRQVREMRPRARRATIRAQKKAEQQ 180

Query: 183 QQGVPTMKKNKKDEEKAEVS 202
           QQG    +K +K E + EVS
Sbjct: 181 QQGTTDTRKKRKKEVEPEVS 200

[Close]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Match: K4CWN5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.500e-88
Identity = 165/201 (82.09%), Postives = 184/201 (91.54%), Query Frame = 1


		  
Query: 3   MVTGA-FNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPN 62
           MV G  F+GNMK+ALAG++RI+L+GLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYAPN
Sbjct: 1   MVMGQPFSGNMKKALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPN 60

Query: 63  RDDGDMCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLR 122
           R++GDMC+VLNAKDICVTGRKLTDK+YRWHTG++GHLKERSLKDQMAKDPTEVIRKAVLR
Sbjct: 61  REEGDMCIVLNAKDICVTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVLR 120

Query: 123 MLPRNKLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTEQ 182
           MLPRNKLRDDRDRKLRIFT DEHPFAD+PLEPYVMPPRQVRE+RPR +RA+IRA+KK EQ
Sbjct: 121 MLPRNKLRDDRDRKLRIFTNDEHPFADRPLEPYVMPPRQVRELRPRTRRAMIRAEKKAEQ 180

Query: 183 QQ----GVPTMKKNKKDEEKA 199
           QQ         KKNK  EE+A
Sbjct: 181 QQQGTNNTSKRKKNKDVEEEA 201

[Close]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Match: RL13_PEPD6 (50S ribosomal protein L13 OS=Peptoclostridium difficile (strain 630) GN=rplM PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.100e-31
Identity = 65/120 (54.17%), Postives = 87/120 (72.50%), Query Frame = 1


		  
Query: 28  RWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKY 87
           +W + DA+G+ LGRLA++I+TV++GK KPT+ P+ D GD  VV+NA+ I ++G+KL  KY
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 88  YRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPFA 147
           YR+HTG+VG LKE S +D M K P EVI  AV  MLP+NKLR     +LR+F G EH  A
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEHTHA 133

[Close]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 6.100e-31
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 1


		  
Query: 28  RWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKY 87
           +W V DA+G+ LGRLA++IS +++GK+KP Y P+ D GD  VV+NA  + VTGRK   K 
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 88  YRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPFA 147
           YRWHTG+ G L+ERS +  + K P E++R+AV  M+P+ +L   + +KLRI+ G EHP A
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 148 DKPLEPY 155
            +  EPY
Sbjct: 134 GQTPEPY 140

[Close]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.300e-28
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 1


		  
Query: 29  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKYY 88
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  +V+NA+ I +TGRK   K Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 89  RWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPFAD 148
             H+G+ G LKE   K  +AK P  ++R AV RMLP+N++      KLRI+ G  HP A 
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 149 KPLEPYV 156
           +  +PY+
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.300e-28
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 1


		  
Query: 28  RWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKY 87
           +W V DA G+ LGRLAS+I+ +++GK KP Y P+ D GD  +V+NA+ I VTG+KL  K 
Sbjct: 14  KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKK 73

Query: 88  YRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPF- 147
           Y WH+ + G LKER+LK  +   P EVIR AV RMLP+N+L     +KL+++ G EHP  
Sbjct: 74  YYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQ 133

Query: 148 ADKP 151
           A KP
Sbjct: 134 AQKP 137

[Close]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Match: RL13_CHLAA (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.100e-27
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 1


		  
Query: 29  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKYY 88
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  +V+NA+ I +TGRK   K Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 89  RWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPFAD 148
             HTG+ G +K    K  +AK P  ++R AV RMLP+N++      KLRI+ G  HP A 
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 149 KPLEPYV 156
           +  +PY+
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Spo03615.1 vs. TAIR (Arabidopsis)
Match: AT3G01790.1 (Ribosomal protein L13 family protein)

HSP 1 Score: 305.4 bits (781), Expect = 2.500e-83
Identity = 150/196 (76.53%), Postives = 171/196 (87.24%), Query Frame = 1


		  
Query: 7   AFNGNMKRALAGLRRIDLDGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGD 66
           +F GN+K+A+AG++RI+LDGLRWRVFDA+GQVLGRLASQISTV+Q KDKPTY PNRDDGD
Sbjct: 10  SFKGNLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGD 69

Query: 67  MCVVLNAKDICVTGRKLTDKYYRWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRN 126
           +C+VLNAK+I  TGRKLTDK+YRWHTG++GHLKERSLKDQMAKDPTEVIRKAV RMLP N
Sbjct: 70  ICIVLNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSN 129

Query: 127 KLRDDRDRKLRIFTGDEHPFADKPLEPYVMPPRQVREMRPRAKRALIRAQKKTEQQQGVP 186
            LRDDRDRKLRIF G EHPF DKPLEP+VMPPR+VREMRPRA+RA+IRAQKK EQ +   
Sbjct: 130 NLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEG 189

Query: 187 TMKKNKKDEEKAEVSA 203
           T  K  K    +EV A
Sbjct: 190 TEVKKGKKRTLSEVPA 205

[Close]

BLAST of Spo03615.1 vs. TAIR (Arabidopsis)
Match: AT1G78630.1 (Ribosomal protein L13 family protein)

HSP 1 Score: 87.8 bits (216), Expect = 8.300e-18
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 1


		  
Query: 29  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCVVLNAKDICVTGRKLTDKYY 88
           W V DA  ++LGRLAS I+  ++GK+  +Y P+ D G   +V+NA+ + V+G+K   K Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 89  RWHTGHVGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTGDEHPF-A 148
           R H+G  G +   +      + P  ++  AV  MLP+ +L       L+++ G +HP  A
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 149 DKPLE 153
            KPL+
Sbjct: 225 QKPLD 229

The following BLAST results are available for this feature:

BLAST of Spo03615.1 vs. NCBI nr
BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
BLAST of Spo03615.1 vs. TAIR (Arabidopsis)

BLAST of Spo03615.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902186844\|gb\|KNA10791.1\|	4.3e-109	100.	hypothetical protein SOVF_1410...	[more]
gi\|731369308\|ref\|XP_010696508.1\|	3.1e-99	91.0	PREDICTED: 50S ribosomal prote...	[more]
gi\|976905198\|gb\|KVH92842.1\|	6.4e-89	82.5	hypothetical protein Ccrd_0051...	[more]
gi\|296090245\|emb\|CBI40064.3\|	8.4e-89	83.0	unnamed protein product [Vitis...	[more]
gi\|225452155\|ref\|XP_002270526.1\|	8.4e-89	83.0	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo03615.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QWA4_SPIOL	3.0e-109	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8BA92_BETVU	2.2e-99	91.0	Uncharacterized protein OS=Bet...	[more]
A0A118JVC4_CYNCS	4.5e-89	82.5	Uncharacterized protein (Fragm...	[more]
F6I5K7_VITVI	5.9e-89	83.0	Putative uncharacterized prote...	[more]
K4CWN5_SOLLC	6.5e-88	82.0	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo03615.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL13_PEPD6	6.1e-31	54.1	50S ribosomal protein L13 OS=P...	[more]
RL13_RUBXD	6.1e-31	49.6	50S ribosomal protein L13 OS=R...	[more]
RL13_CHLAD	6.3e-28	48.8	50S ribosomal protein L13 OS=C...	[more]
RL13_AQUAE	8.3e-28	50.8	50S ribosomal protein L13 OS=A...	[more]
RL13_CHLAA	1.1e-27	48.0	50S ribosomal protein L13 OS=C...	[more]

BLAST of Spo03615.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G01790.1	2.5e-83	76.5	Ribosomal protein L13 family p...	[more]
AT1G78630.1	8.3e-18	35.2	Ribosomal protein L13 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	GENE3D	3.90.1180.10		coord: 28..150 score: 3.3
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 29..152 score: 25
IPR005822	Ribosomal protein L13	PIR	PIRSF002181	RPL13p_RPL13Aa_RPL16e_RPL13o	coord: 12..197 score: 3.9
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 9..168 score: 2.3
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 28..148 score: 1.3
IPR005822	Ribosomal protein L13	unknown	SSF52161	Ribosomal protein L13	coord: 28..151 score: 2.75
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAMs	TIGR01066	TIGR01066	coord: 28..147 score: 2.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10089	0.66	Barchart \| Table
Spo11618	0.65	Barchart \| Table