Spo03665 (gene)

Overview
NameSpo03665
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNucleolar GTP-binding protein 1
LocationSpoScf_01061 : 111053 .. 114293 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGGTTAAACCCCAACAGTTGTCCATAAAGGTTATGCAATTTCTCGTCTTAGGCAGTTTTACATGAGGAAAGTCAAATACACACAACAGAACTTTCATGAAAAGCTTTCTTCCATTATTGATGAGTTCCCTAGGCTCTATGATATCCACCCTTTTATGGAGATCTCCTCCATGTTCTTTACCATAATGATCGCTACAAGCTTTCCCTTGGACAAGTGAATACTGCAGGAAACCTGATTTCAAAAATCTCCAAGGATTATGTTAAGCTGTTGAAGTATGGTGACTCACTCTACAGATGTAAGTGTCTTAAAGTTGCTGCTCTTGGTTGAATATGCTCTCCGTGGAATTGTATGCTCTTCACATAGCTTCATTATTTGTCTCTGTGCAGGTTGTATTTCTCAATCTCTTGTCTCAATTTGCAGATCTTGTTCGTCCATATTAATGGTTTTGTCATCTTATATGATGTAGATGGTCTAGCGTAAGGTAACATCAAAAGTTCCTCCTTGTTTTTGTTTAATTTTTCGTTATTTTTTCTAATTTTGGATATCTAGGGTTTTTAGGTAGTTTCATTTGCAGCTGAAGTACTAGCAAGAGTCGGCCCATTAATTAAGAGCATGTGAAGCTTTATATCAGAGTACATAAAAATAAAGGGGAAAAGCAGTAGCATCAGCTGAAATGTAAGATGCATTGTCTTCTTACAACAAAAACAATCCCCTCCTAATTGACTTTAGAAAATGATGGTTTAACAATAAGACAGATATTATTATCTACAAATATTATGGGGTGAGAGGGGAGGTGATCAAACATTCAAACCGACATGTTTCTATTGCAATTGTATAGAGAATGTTCTTTGTATGCTCTGGAGGCCTTGATATGTATTTGGCAACTTAGAGAACTAGGTTAGAGCAATAACATTCTTCTCTTTCTGAATTCTGAAACAAGGCCGCTTAACTTTCTTTTTGAAAACAGGTTAGAGCTTGGTCTTTTGTTGGGGGCTCTTAGATGTGCTTAGGTAAAGTTTTCATCAGTAATTTTACTAATTGATGTTTGATGTAAAGTAAAATAAAGTTATTAGGAATGTAGTTTGAGTTTTGAAAATAGTAGCTACCTATCATGTTAGTATACTTTTTTTTTTGTTGATTTCGATTTGCTATCTAAATATATGGGTAGATTTTGTATTATTGTTGATGTGTCATGTGTGATTTGAATACATGCATTACTTTTGATTTTGTTGTAATGAGCTTCTACAATTTTTTTGAGTTTCAAAGTTAAGAAAACAAGAATATATAGTTCTTTGACTTGAAAGGTTACTTACTTGTCCTACATTTTCGCTGTTGTTAGACAATTTTCATTTTCCCCTTTGGATTTTATGGTGTCCCTCGTGATTATTATTTCTGTATGTAACCAATTTTATGGTGTCCCTCGGATTTATCTAGTTTCTTTTTCTAGTTGTGTAAAAGTAGTGGTGATTATATTTTTCAGAACTTTTAGACTAGATTTTCTTATCATTGACGGCCCTGTCTTGCCGTGTTGAATTTCAGAATATGCATTAGGGCTACCCTGCTGAAACATTTGTGTTATTATATGCGCTTGAGGTTGTTTTTAAGGTTTGAATTGAAATTTATTATTCCAGTTTATTATTTTGGTTGGCCCGTTATCTGATTATTATCAACCTGCAATAGCACTCGCTTCACAGCACTGGAAAGAACAGTAGTGTGTCTGAGTGTTCTTTGCGGTTAGGGGCTGACTTTTTTGGTTACTGCTTCTATTTTTCTGTTGCAATTTGTTGCTCTGGTGCTCTTTTCTTCTACTATCCAATTTGTTGTTCTGGTGTTATTTTCTGCTGCTATCCTAGCTGTGTCGTCCTTTTTCGGATAAGTTACGAAAAATAGCTAACATGTTTATTGTGTAAGTGGTGTTTTTTTCTTTGTTACTCTGTTCTTAACCTATGTCCTATTTAGTAGGTACTGAACATGTTAGCTTTGGTTAGTTACTAGTAAGAAAACAAAGAAAACACACCTCCAAAGTTTGTCAGCCTTGCTGATCTCTTCTTCTGTGCAGGCGATTTCAGCCCACCCATAAAGTCATCATACACTATTTCAGCCGACCCGTAATTCCATAAAGTCTTCAAACATTGTTGCAACACAAACTATGGTTAGTAGGCATTGATAGGCTAATCACCCCCAACTAGCCAGTACGTCTCACTTTCAACTATCAAGTATCACCCTGATTGTCTAGTGAATATCTCCCAATATCTAGTCCATGCTATCAGGCCTCCACTCTTCTTCGAGCTACACCTTATCCCAACGCAAATATCCAAGTCTATCACTATCCCGATACCCATGCTGTTGATAACTTTTGTTAAGTTTATTATTAATTTAGCTTTATCATCTAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGGTATATATGTCAGAAGCTAGGAAAAATGAAACTGGTATAGCTGATACTGATTTTGACTCCGACTCTACCCAGTCAATCAATGAAAATAAGAGTTTATGAATGTTGTAATTTTATGTTGTCAGTACATAAAAGTCTTCTGGTATTTCATGATTTTTGTAGAAAAGAGTAAATGTTTATGATGGCTTGATCAGGGTTTTATACAAGGGAGATTCAACCATTCGGATTTGAAACAATATGTTTATATAATGTATTTGCAGGGGCTAATCTGGTCTGTACGTATGAACTATGAAGTTGATAAGTTGATAAGAAGGGAATCAACCCTCGTCTTTTATTAGAGTTAACATTTATTGTTTCATTGTTGTTTTGGTTCATTTCCGACGGGTGATTTGGATTTCCAACTCATGCTTATTTCATTTTGATTTTTCTTTGAAGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAGATCCTAGTTTTTCTAGGATTTAGTTCTTCGGTTTAGTAGATACAATTTGTGTTTTTTTTAATTATGTTTTGGACTATTTAGTTAGTAACATATTAGTGACATTATCATGTACTATGGATTTTAACGTACTATGTACTTCTAGATTTTTGTAAGTATTTTTAATGTTATGTTGATCGAAGACCAATTATTTAAAAT

mRNA sequence

ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAGATCCTAGTTTTTCTAGGATTTAGTTCTTCGGTTTAGTAGATACAATTTGTGTTTTTTTTAATTATGTTTTGGACTATTTAGTTAGTAACATATTAGTGACATTATCATGTACTATGGATTTTAACGTACTATGTACTTCTAGATTTTTGTAAGTATTTTTAATGTTATGTTGATCGAAGACCAATTATTTAAAAT

Coding sequence (CDS)

ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAG

Protein sequence

MVQYNLKKITVVPNGKEMIEFVLSRTQETKKCKLLTLGTGYPGIAVIVVIVQRDKEPHENEAMTLALISYYHY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03665.1Spo03665.1mRNA


Homology
[Close]
BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Match: AT1G50920.1 (Nucleolar GTP-binding protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.500e-6
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 1  MVQYNLKKITVVPNGKEMIEFVLSRTQ 28
          MVQYN K+ITVVPNGKE ++ +LSRTQ
Sbjct: 1  MVQYNFKRITVVPNGKEFVDIILSRTQ 27
[Close]
BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Match: AT1G10300.1 (Nucleolar GTP-binding protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.000e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 1  MVQYNLKKITVVPNGKEMIEFVLSRTQ 28
          MV+YN KKITVVPNGK+ ++ VLSRTQ
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQ 56
The following BLAST results are available for this feature:
BLAST of Spo03665.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo03665.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo03665.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G50920.14.5e-674.0Nucleolar GTP-binding protein[more]
AT1G10300.11.0e-574.0Nucleolar GTP-binding protein[more]
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0009987 cellular process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005794 Golgi apparatus
molecular_function GO:0005524 ATP binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0008568 microtubule-severing ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo142400.78Barchart | Table
Spo013440.77Barchart | Table
Spo261910.75Barchart | Table
Spo047780.74Barchart | Table
Spo109650.74Barchart | Table
Spo190130.74Barchart | Table
Spo084030.74Barchart | Table
Spo125430.73Barchart | Table
Spo115340.73Barchart | Table
Spo065740.73Barchart | Table
Spo018870.73Barchart | Table
Spo241480.72Barchart | Table
Spo230960.72Barchart | Table
Spo046590.72Barchart | Table
Spo263520.71Barchart | Table
Spo092140.71Barchart | Table
Spo218230.71Barchart | Table
Spo226940.71Barchart | Table
Spo177300.71Barchart | Table
Spo270090.71Barchart | Table
Spo205030.70Barchart | Table
Spo023400.70Barchart | Table
Spo077410.70Barchart | Table
Spo113520.70Barchart | Table
Spo201390.70Barchart | Table
Spo269900.69Barchart | Table
Spo147820.69Barchart | Table
Spo149090.69Barchart | Table
Spo230420.69Barchart | Table
Spo171860.69Barchart | Table
Spo142640.68Barchart | Table
Spo057650.68Barchart | Table
Spo185420.68Barchart | Table
Spo031630.68Barchart | Table
Spo250500.68Barchart | Table
Spo107560.68Barchart | Table
Spo027490.68Barchart | Table
Spo031100.68Barchart | Table
Spo196700.68Barchart | Table
Spo120900.67Barchart | Table
Spo124430.67Barchart | Table
Spo095450.67Barchart | Table
Spo088630.67Barchart | Table
Spo196090.67Barchart | Table
Spo065530.67Barchart | Table
Spo056270.67Barchart | Table
Spo237450.67Barchart | Table
Spo260730.67Barchart | Table
Spo166800.66Barchart | Table
Spo112760.66Barchart | Table
Spo196010.66Barchart | Table
Spo149110.66Barchart | Table
Spo105830.66Barchart | Table
Spo225500.66Barchart | Table
Spo172200.65Barchart | Table
Spo048730.65Barchart | Table
Spo124230.65Barchart | Table
Spo043160.65Barchart | Table
Spo159950.65Barchart | Table
Spo214220.65Barchart | Table