Spo03736 (gene) | SpinachBase

Overview


Name	Spo03736
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00131 : 476627 .. 477664 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTATAGGAATGTAGAAGTGTAAAATGTTGGCAGTAGTCGTACTTAAGTTACTCCAATTTAACAGCATTTACATAAAAAGCAGAGCTTTTTCTGCTACAAATTATTTTCTCCACCCACATACCAAACCAATCCTCTTTTAATTCCTTCATTTTTTAATTCAATTTTATTTTTTATTTAAAAACAAAAAAAAAAAAAGTAAGAAAAAAGAGTCCAACAGAAAAAGGTAGAGGAGAGAGAAACTAGAGAAAATGGGGGATCATGCAAACCCACACCCAAACTGGTCGTCGATTCATCTTCTCCACATCCTCACTTCTTCTGCTTCTTCTTCTTCTTCCTCCCCAATTTCTCTGTTTTTTTAGGGTTTCACACTACTTCACTTTTCTGCCGGCTCTTGCTCTCACTAGGTATTTCATTTCATTTTATTTAATTTAATTTTTATTGTATCTTTCCGTCTCTCTTTATGTGCTTTATTTCATAATTCAATTTCTGTCGCCTTAATTCTAGGGTTTCTCCCTTTTTTGCTTTTGTTGCTGCTGATCTCGATGTAATTCCATGTTTTTTTTTAACTTTTTTTTTGATTGTTAGTTATATTACTTTATTTTAGTTGCTACTGTTTGTTTTGGTGATTACTCAATCCTTCTTTTATGATTTTTCAATTGAATTTTGGTGTGCTTTATTCTGTTTGATATAATAAAATGTGTTCAGTTTTTGTTTGAATTGTACTGATGAATTGAAATGATTTCTCAATATTTCGTCATTTTTTTTTAATTTTTTAATTTTTATATACCGAAGTAGGATTTTGTCTTGTTTTTTATGGAATAGGGTTTTTGCTGAATCTTTGTTTTTAGAGCTACTATAACCTTTAATTGGTGGTAGAAAAGATGGAAATTTTAGATTTTGATTTTTCTGAAATTTAATGCACTACTTTATTAATGTTCTAATTGATTGTTTTAGGTTAGATTCAGCAAGTGCTGCACAGTCAACTGGGAGTAAGAAGATAGTGACTGTTGATTTATTTGTTGTTAGAGAGGAGTAG

mRNA sequence

GGGTATAGGAATGTAGAAGTGTAAAATGTTGGCAGTAGTCGTACTTAAGTTACTCCAATTTAACAGCATTTACATAAAAAGCAGAGCTTTTTCTGCTACAAATTATTTTCTCCACCCACATACCAAACCAATCCTCTTTTAATTCCTTCATTTTTTAATTCAATTTTATTTTTTATTTAAAAACAAAAAAAAAAAAAGTAAGAAAAAAGAGTCCAACAGAAAAAGGTAGAGGAGAGAGAAACTAGAGAAAATGGGGGATCATGCAAACCCACACCCAAACTGGTCGTCGATTCATCTTCTCCACATCCTCACTTCTTCTGCTTCTTCTTCTTCTTCCTCCCCAATTTCTCTGTTTTTTTAGGGTTTCACACTACTTCACTTTTCTGCCGGCTCTTGCTCTCACTAGGTTAGATTCAGCAAGTGCTGCACAGTCAACTGGGAGTAAGAAGATAGTGACTGTTGATTTATTTGTTGTTAGAGAGGAGTAG

Coding sequence (CDS)

ATGCAAACCCACACCCAAACTGGTCGTCGATTCATCTTCTCCACATCCTCACTTCTTCTGCTTCTTCTTCTTCTTCCTCCCCAATTTCTCTGTTTTTTTAGGGTTTCACACTACTTCACTTTTCTGCCGGCTCTTGCTCTCACTAGGTTAGATTCAGCAAGTGCTGCACAGTCAACTGGGAGTAAGAAGATAGTGACTGTTGATTTATTTGTTGTTAGAGAGGAGTAG

Protein sequence

MQTHTQTGRRFIFSTSSLLLLLLLLPPQFLCFFRVSHYFTFLPALALTRLDSASAAQSTGSKKIVTVDLFVVREE

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo03736.1	Spo03736.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo03736.1 vs. NCBI nr
BLAST of Spo03736.1 vs. UniProtKB/TrEMBL
BLAST of Spo03736.1 vs. ExPASy Swiss-Prot
BLAST of Spo03736.1 vs. TAIR (Arabidopsis)

BLAST of Spo03736.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo03736.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo03736.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo03736.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009790	embryo development
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0035970	peptidyl-threonine dephosphorylation
biological_process	GO:0008152	metabolic process
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0006897	endocytosis
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0047617	acyl-CoA hydrolase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11961	0.76	Barchart \| Table
Spo27004	0.75	Barchart \| Table
Spo27102	0.75	Barchart \| Table
Spo05093	0.75	Barchart \| Table
Spo13029	0.74	Barchart \| Table
Spo05073	0.74	Barchart \| Table
Spo24857	0.74	Barchart \| Table
Spo21067	0.73	Barchart \| Table
Spo08970	0.73	Barchart \| Table
Spo06949	0.73	Barchart \| Table
Spo14087	0.73	Barchart \| Table
Spo01261	0.72	Barchart \| Table
Spo19245	0.72	Barchart \| Table
Spo16911	0.72	Barchart \| Table
Spo01858	0.72	Barchart \| Table
Spo08850	0.72	Barchart \| Table
Spo17209	0.71	Barchart \| Table
Spo20544	0.71	Barchart \| Table
Spo21691	0.71	Barchart \| Table
Spo02280	0.71	Barchart \| Table
Spo06473	0.71	Barchart \| Table
Spo14942	0.70	Barchart \| Table
Spo02643	0.70	Barchart \| Table
Spo09290	0.70	Barchart \| Table
Spo08969	0.70	Barchart \| Table
Spo01840	0.70	Barchart \| Table
Spo09993	0.70	Barchart \| Table
Spo27062	0.70	Barchart \| Table
Spo11733	0.70	Barchart \| Table
Spo02107	0.69	Barchart \| Table
Spo12107	0.69	Barchart \| Table
Spo10316	0.69	Barchart \| Table
Spo22955	0.69	Barchart \| Table
Spo15873	0.69	Barchart \| Table
Spo02484	0.69	Barchart \| Table
Spo14416	0.69	Barchart \| Table
Spo10815	0.69	Barchart \| Table
Spo10923	0.69	Barchart \| Table
Spo07184	0.69	Barchart \| Table
Spo02010	0.69	Barchart \| Table
Spo00344	0.69	Barchart \| Table
Spo04082	0.68	Barchart \| Table
Spo17318	0.68	Barchart \| Table
Spo17386	0.68	Barchart \| Table
Spo18575	0.68	Barchart \| Table
Spo19850	0.68	Barchart \| Table
Spo22028	0.68	Barchart \| Table
Spo22529	0.68	Barchart \| Table
Spo01841	0.68	Barchart \| Table
Spo01929	0.68	Barchart \| Table
Spo05731	0.68	Barchart \| Table
Spo05955	0.68	Barchart \| Table
Spo06294	0.68	Barchart \| Table
Spo08999	0.68	Barchart \| Table
Spo27081	0.68	Barchart \| Table
Spo10940	0.68	Barchart \| Table
Spo12202	0.68	Barchart \| Table
Spo01357	0.68	Barchart \| Table
Spo14008	0.68	Barchart \| Table
Spo14096	0.68	Barchart \| Table
Spo26834	0.68	Barchart \| Table
Spo25876	0.68	Barchart \| Table
Spo15639	0.68	Barchart \| Table
Spo15881	0.67	Barchart \| Table
Spo06962	0.67	Barchart \| Table
Spo17959	0.67	Barchart \| Table
Spo19965	0.67	Barchart \| Table
Spo23675	0.67	Barchart \| Table
Spo14225	0.67	Barchart \| Table
Spo22760	0.67	Barchart \| Table
Spo14454	0.67	Barchart \| Table
Spo24287	0.67	Barchart \| Table
Spo11296	0.67	Barchart \| Table
Spo11098	0.67	Barchart \| Table
Spo03019	0.67	Barchart \| Table
Spo09605	0.67	Barchart \| Table
Spo26811	0.67	Barchart \| Table
Spo12364	0.67	Barchart \| Table
Spo08772	0.67	Barchart \| Table
Spo23588	0.66	Barchart \| Table
Spo01356	0.66	Barchart \| Table
Spo01531	0.66	Barchart \| Table
Spo03196	0.66	Barchart \| Table
Spo03608	0.66	Barchart \| Table
Spo04136	0.66	Barchart \| Table
Spo04908	0.66	Barchart \| Table
Spo04996	0.66	Barchart \| Table
Spo05135	0.66	Barchart \| Table
Spo05728	0.66	Barchart \| Table
Spo05928	0.66	Barchart \| Table
Spo06004	0.66	Barchart \| Table
Spo06681	0.66	Barchart \| Table
Spo06729	0.66	Barchart \| Table
Spo07959	0.66	Barchart \| Table
Spo10421	0.66	Barchart \| Table
Spo10473	0.66	Barchart \| Table
Spo13373	0.66	Barchart \| Table
Spo15865	0.66	Barchart \| Table
Spo17578	0.66	Barchart \| Table
Spo17940	0.66	Barchart \| Table
Spo23071	0.66	Barchart \| Table
Spo23664	0.66	Barchart \| Table
Spo24566	0.66	Barchart \| Table
Spo10427	0.65	Barchart \| Table
Spo00283	0.65	Barchart \| Table
Spo06465	0.65	Barchart \| Table
Spo17032	0.65	Barchart \| Table
Spo15420	0.65	Barchart \| Table
Spo28265	0.65	Barchart \| Table
Spo14980	0.65	Barchart \| Table
Spo25230	0.65	Barchart \| Table
Spo14881	0.65	Barchart \| Table
Spo14779	0.65	Barchart \| Table
Spo14667	0.65	Barchart \| Table
Spo13941	0.65	Barchart \| Table
Spo12155	0.65	Barchart \| Table
Spo19701	0.65	Barchart \| Table
Spo22811	0.65	Barchart \| Table
Spo17329	0.65	Barchart \| Table