Spo03757 (gene)

Overview
NameSpo03757
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 87891203 .. 87891651 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGGTACTGATCCTACATTGCCTTTTTTGTTTCTTCCAATTTCACTTTTGTTTGCTTTCTGTTTATAAATTAATTGTTCTAGACCTATAATTAG

mRNA sequence

TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Coding sequence (CDS)

ATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Protein sequence

MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLGAISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKTYN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03757.1Spo03757.1mRNA


Homology
[Close]
BLAST of Spo03757.1 vs. NCBI nr
Match: gi|902187999|gb|KNA11037.1| (hypothetical protein SOVF_138840, partial [Spinacia oleracea])

HSP 1 Score: 171.4 bits (433), Expect = 7.700e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93
[Close]
BLAST of Spo03757.1 vs. NCBI nr
Match: gi|731340376|ref|XP_010681364.1| (PREDICTED: HD domain-containing protein 2 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 8.000e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93
[Close]
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUS0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_138840 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.300e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93
[Close]
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EYU3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.600e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93
The following BLAST results are available for this feature:
BLAST of Spo03757.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902187999|gb|KNA11037.1|7.7e-40100.hypothetical protein SOVF_1388... [more]
gi|731340376|ref|XP_010681364.1|8.0e-1362.7PREDICTED: HD domain-containin... [more]
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BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QUS0_SPIOL5.3e-40100.Uncharacterized protein (Fragm... [more]
A0A0J8EYU3_BETVU5.6e-1362.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo03757.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03757.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0007165 signal transduction
biological_process GO:0007267 cell-cell signaling
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0008152 metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009651 response to salt stress
biological_process GO:0042908 xenobiotic transport
biological_process GO:0015979 photosynthesis
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0016311 dephosphorylation
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0016310 phosphorylation
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0008283 cell proliferation
biological_process GO:0006342 chromatin silencing
biological_process GO:0006306 DNA methylation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0048451 petal formation
biological_process GO:0009555 pollen development
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0048453 sepal formation
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0009909 regulation of flower development
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
cellular_component GO:0005634 nucleus
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0098588 bounding membrane of organelle
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0044446 intracellular organelle part
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0003919 FMN adenylyltransferase activity
molecular_function GO:0008967 phosphoglycolate phosphatase activity
molecular_function GO:0008531 riboflavin kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo208690.76Barchart | Table
Spo208490.75Barchart | Table
Spo175780.74Barchart | Table
Spo050730.74Barchart | Table
Spo228110.74Barchart | Table
Spo054310.73Barchart | Table
Spo029320.73Barchart | Table
Spo131930.71Barchart | Table
Spo146780.71Barchart | Table
Spo123700.71Barchart | Table
Spo060040.70Barchart | Table
Spo025730.70Barchart | Table
Spo234620.70Barchart | Table
Spo261170.69Barchart | Table
Spo102350.69Barchart | Table
Spo280580.68Barchart | Table
Spo004980.68Barchart | Table
Spo119610.68Barchart | Table
Spo160790.68Barchart | Table
Spo205440.68Barchart | Table
Spo244250.68Barchart | Table
Spo266970.68Barchart | Table
Spo062930.67Barchart | Table
Spo069720.67Barchart | Table
Spo093350.67Barchart | Table
Spo026650.67Barchart | Table
Spo133930.67Barchart | Table
Spo003540.67Barchart | Table
Spo049960.67Barchart | Table
Spo076630.67Barchart | Table
Spo142250.67Barchart | Table
Spo128430.66Barchart | Table
Spo134900.66Barchart | Table
Spo264300.66Barchart | Table
Spo162930.66Barchart | Table
Spo171610.66Barchart | Table
Spo178280.66Barchart | Table
Spo201520.66Barchart | Table
Spo016860.66Barchart | Table
Spo236750.66Barchart | Table
Spo240460.66Barchart | Table
Spo270810.66Barchart | Table
Spo260450.66Barchart | Table
Spo130290.66Barchart | Table
Spo210460.66Barchart | Table
Spo054020.65Barchart | Table
Spo014260.65Barchart | Table
Spo188280.65Barchart | Table
Spo087130.65Barchart | Table
Spo184000.65Barchart | Table
Spo088500.65Barchart | Table