Spo03858 (gene)

Overview
NameSpo03858
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 7341125 .. 7341827 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGGTAAATTCCTTTCCCCCTATTGGTATTATTACACTAATTATTTAATTATCTGATGATGTTTGTTTCTATCTTGAATTAGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGATCTAATAGAGATAAAGTTAATTGGTGTAATTAGTTGCTTTAATTTGGCACAATTACATGTAACATGTTTAACAGTTTAATGTTGAGTTATTGAAAGAGGAAGCTGATAAGGCTCTTGTTATCTCTTGCTATGCTCTATTTTTAAACTTGTGAAAGTAGAGAATTTGAACATAATATACATCCTCCGTTCTGCAAATATCGCACCATTTTTTTTACACTATTCACACTACGACTTTGGCTATTTTTTGTGTTTCGTACTCCG

mRNA sequence

ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGATCTAATAGAGATAAAGTTAATTGGTGTAATTAGTTGCTTTAATTTGGCACAATTACATGTAACATGTTTAACAGTTTAATGTTGAGTTATTGAAAGAGGAAGCTGATAAGGCTCTTGTTATCTCTTGCTATGCTCTATTTTTAAACTTGTGAAAGTAGAGAATTTGAACATAATATACATCCTCCGTTCTGCAAATATCGCACCATTTTTTTTACACTATTCACACTACGACTTTGGCTATTTTTTGTGTTTCGTACTCCG

Coding sequence (CDS)

ATGCAGAAATTACAACCAAATTTGGCAGCAAAAGCTTTACTAATAATCTTATTCCTATTAGCTAGTCTTGCACCAGATTTTACATTAGCTACACCTACTAACGTTGGTTTGCAAGATGCATCATCAGGGTTCTCTTCCACCAATTACAAGGTAAGTAATGGTATCAACAACATAGAAGTAGAGAAGAGAGAAAGAAGGAGAAGAATAAGAGCAGCTCCGCCACCGCCGAAGGCGGGTAAGGAGGTTAGTCCAGTTGCGCCACCACCAATACTACGACCACCACCACCACCACCACCATCAACAGGATGTACACCGGGAGTTCCACCTCCCCCTCCTATTTCCTACCCCCCTCGTCATCTCTGA

Protein sequence

MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEVEKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03858.1Spo03858.1mRNA


Homology
[Close]
BLAST of Spo03858.1 vs. NCBI nr
Match: gi|902230343|gb|KNA21828.1| (hypothetical protein SOVF_040040 [Spinacia oleracea])

HSP 1 Score: 218.8 bits (556), Expect = 5.200e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60
           MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV
Sbjct: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60

Query: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
           EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Sbjct: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
[Close]
BLAST of Spo03858.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQS2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040040 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.600e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60
           MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV
Sbjct: 1   MQKLQPNLAAKALLIILFLLASLAPDFTLATPTNVGLQDASSGFSSTNYKVSNGINNIEV 60

Query: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
           EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL
Sbjct: 61  EKRERRRRIRAAPPPPKAGKEVSPVAPPPILRPPPPPPPSTGCTPGVPPPPPISYPPRHL 120
The following BLAST results are available for this feature:
BLAST of Spo03858.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902230343|gb|KNA21828.1|5.2e-54100.hypothetical protein SOVF_0400... [more]
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BLAST of Spo03858.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RQS2_SPIOL3.6e-54100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03858.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03858.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0042732 D-xylose metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0002213 defense response to insect
biological_process GO:0006508 proteolysis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007623 circadian rhythm
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0009909 regulation of flower development
cellular_component GO:0005829 cytosol
cellular_component GO:0048046 apoplast
cellular_component GO:0000785 chromatin
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0004034 aldose 1-epimerase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0008253 5'-nucleotidase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo018680.78Barchart | Table
Spo241780.77Barchart | Table
Spo076230.76Barchart | Table
Spo021430.75Barchart | Table
Spo079300.75Barchart | Table
Spo107520.75Barchart | Table
Spo258730.74Barchart | Table
Spo068290.74Barchart | Table
Spo052300.74Barchart | Table
Spo228760.73Barchart | Table
Spo068810.73Barchart | Table
Spo177210.73Barchart | Table
Spo191960.73Barchart | Table
Spo107980.73Barchart | Table
Spo225280.73Barchart | Table
Spo158500.73Barchart | Table
Spo215420.72Barchart | Table
Spo229930.72Barchart | Table
Spo087490.72Barchart | Table
Spo188340.72Barchart | Table
Spo051340.72Barchart | Table
Spo263020.72Barchart | Table
Spo268500.72Barchart | Table
Spo146970.72Barchart | Table
Spo090930.72Barchart | Table
Spo253510.71Barchart | Table
Spo244400.71Barchart | Table
Spo003400.71Barchart | Table
Spo077780.71Barchart | Table
Spo219960.71Barchart | Table
Spo099950.70Barchart | Table
Spo143350.70Barchart | Table
Spo085990.70Barchart | Table
Spo035770.70Barchart | Table
Spo077680.70Barchart | Table
Spo281890.70Barchart | Table
Spo209660.70Barchart | Table
Spo029150.70Barchart | Table
Spo078180.70Barchart | Table
Spo235040.70Barchart | Table
Spo038570.70Barchart | Table
Spo065430.70Barchart | Table
Spo214740.70Barchart | Table
Spo053110.69Barchart | Table
Spo059690.69Barchart | Table
Spo077590.69Barchart | Table
Spo141300.69Barchart | Table
Spo078640.69Barchart | Table
Spo047630.69Barchart | Table
Spo043770.69Barchart | Table
Spo218110.69Barchart | Table
Spo106440.69Barchart | Table
Spo212890.69Barchart | Table
Spo239390.69Barchart | Table
Spo007500.69Barchart | Table
Spo166610.69Barchart | Table
Spo168920.69Barchart | Table
Spo001240.68Barchart | Table
Spo057510.68Barchart | Table
Spo120250.68Barchart | Table
Spo148570.68Barchart | Table
Spo162090.68Barchart | Table
Spo163210.68Barchart | Table
Spo189320.68Barchart | Table
Spo197730.68Barchart | Table
Spo228770.68Barchart | Table
Spo018070.67Barchart | Table
Spo176280.67Barchart | Table
Spo185680.67Barchart | Table
Spo123410.67Barchart | Table
Spo099230.67Barchart | Table
Spo218240.67Barchart | Table
Spo218450.67Barchart | Table
Spo076040.67Barchart | Table
Spo043280.67Barchart | Table
Spo039030.67Barchart | Table
Spo022520.67Barchart | Table
Spo168170.67Barchart | Table
Spo257870.67Barchart | Table
Spo013080.67Barchart | Table
Spo263420.67Barchart | Table
Spo268510.67Barchart | Table
Spo147420.67Barchart | Table
Spo168060.66Barchart | Table
Spo084420.66Barchart | Table
Spo222600.66Barchart | Table
Spo273300.66Barchart | Table
Spo030270.66Barchart | Table
Spo106530.66Barchart | Table
Spo244270.66Barchart | Table
Spo215010.66Barchart | Table
Spo087850.66Barchart | Table
Spo087640.66Barchart | Table
Spo223640.66Barchart | Table
Spo004130.66Barchart | Table
Spo006000.66Barchart | Table
Spo130210.66Barchart | Table
Spo035470.66Barchart | Table
Spo129340.66Barchart | Table
Spo190070.66Barchart | Table
Spo127420.66Barchart | Table
Spo223230.65Barchart | Table
Spo271590.65Barchart | Table
Spo076360.65Barchart | Table
Spo151450.65Barchart | Table
Spo004110.65Barchart | Table
Spo263310.65Barchart | Table
Spo137800.65Barchart | Table