Spo03878 (gene)

Overview
NameSpo03878
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 20567062 .. 20568430 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGTTGAGGCAATCCTGGGTTTCGGGGAAGAGGGGGTGGGGAAGGTTGTAAGTATGTGCCCTGTGCTTATAGATGGCCAAAAAAGTTTAAAAAAAAAAAGAACAAAATCCTGCAGATAAAGGTTTTGCACTGATAGGATACTTGATTCCTTCTAGTTGCCTAACATTTCCCTCATCCCAAGCAGATGGGCAGTTCACTCTCCACAGGGTGGTTAGCATCACAAATTGCTAATTTCGTTCTTAATATATGTTAGGAATTTTGAATAGTTGCTGCTTCTGAACCATAATCTGAACTTGTCTGAAGTTCTTAGACGTGCTGTATTTTATGGGTGAAAATAAAAGAGCCTTTAATTCGTCCATTCTTTTACGGAGTAGTTTTTAGTCTGTAAGTTTGTACTGTAAGTAGTGTAAAGATGTATTTGTGAACTTTGAGGGAAATAAAGATTTATTGATTTATGATTGCTAATGTTCCTTTTTCTGTGGATCGTTACATATTGATCTTCTCTGATCTTTTTCTCCTTGTATGGAATTCCAGTCACTGCCCCTTGTTTGATGTTGGGAAATTCTTTAAATGTTCATATATGTGCACCAAGGAGTGAGATGCATTTGTTTACTTTTGCAGACGACACAGGTATAGCAGAAGTCCAAGTAGAGGACGAAGTTCAAGGAGATACAATTCTCGTTCTCGTTCGCGTTCTCACTCTCGATCTCACTCCCGTTCTCGGTCCCCACCACGCTCTCCAAGGTCAGCAATGGCCCTTTTTACCCTTTAAATGACGATTCTTTCCTTTTTTGTTATTCGTTCTTGAATCTATTGGCTACTCGAAAACAATTGGAGTAATCTCGCATAATATGACTTTGCAGGCGCAGAAGTCGGTCTAGGTACTGATGCAGATGAAATTAATGTATGATTGTGTATGTTTGTTTGCATATGAAAAATATGCTTGTATGTTGGAAAAAAGTCTCCTAGAGTAGGTTACATATATAGTCCTGGTTTGTGTAGGCTATTGGGGGAGAAAAACATGTTTGTTTTGTATCTTGTAAGAACACGAGTACTGGGATGCAGAGAAGTGTCTGTTTTTGTATTGCTACATTCAGTTAAGTACTGGTTGATTCCCAAAACAGCCTGCAAATTGGCGCATGAATTCAGTTTTTTCTTGGAATACATTCTTTTTCTTTGTTTTCATATTTAGCAGGAACAGGAACCCAGGTTTTTATTGGGCTGGAATTGCTTTTGGGTTTGGGTTCCTGGTTTATTCTCGATTTGCTGGAAGGCTGATTTGATTCTTTTTCTGTGGTAAAAATCAGTTGATGTGAATTCTAGTGCTTTATTTTTACATTCGATAAATTAGGTACTCCCTCC

mRNA sequence

ATGGTAGCGGTTGAGGCAATCCTGGGTTTCGGGGAAGAGGGGGTGGGGAAGGTTGTAATCACTGCCCCTTGTTTGATGTTGGGAAATTCTTTAAATGTTCATATATGTGCACCAAGGAGTGAGATGCATTTGTTTACTTTTGCAGACGACACAGGTATAGCAGAAGTCCAAGTAGAGGACGAAGTTCAAGGAGATACAATTCTCGTTCTCGTTCGCGTTCTCACTCTCGATCTCACTCCCGTTCTCGGTCCCCACCACGCTCTCCAAGGCGCAGAAGTCGGTCTAGGTACTGATGCAGATGAAATTAATGTATGATTGTGTATGTTTGTTTGCATATGAAAAATATGCTTGTATGTTGGAAAAAAGTCTCCTAGAGTAGGTTACATATATAGTCCTGGTTTGTGTAGGCTATTGGGGGAGAAAAACATGTTTGTTTTGTATCTTGTAAGAACACGAGTACTGGGATGCAGAGAAGTGTCTGTTTTTGTATTGCTACATTCAGTTAAGTACTGGTTGATTCCCAAAACAGCCTGCAAATTGGCGCATGAATTCAGTTTTTTCTTGGAATACATTCTTTTTCTTTGTTTTCATATTTAGCAGGAACAGGAACCCAGGTTTTTATTGGGCTGGAATTGCTTTTGGGTTTGGGTTCCTGGTTTATTCTCGATTTGCTGGAAGGCTGATTTGATTCTTTTTCTGTGGTAAAAATCAGTTGATGTGAATTCTAGTGCTTTATTTTTACATTCGATAAATTAGGTACTCCCTCC

Coding sequence (CDS)

ATGGTAGCGGTTGAGGCAATCCTGGGTTTCGGGGAAGAGGGGGTGGGGAAGGTTGTAATCACTGCCCCTTGTTTGATGTTGGGAAATTCTTTAAATGTTCATATATGTGCACCAAGGAGTGAGATGCATTTGTTTACTTTTGCAGACGACACAGGTATAGCAGAAGTCCAAGTAGAGGACGAAGTTCAAGGAGATACAATTCTCGTTCTCGTTCGCGTTCTCACTCTCGATCTCACTCCCGTTCTCGGTCCCCACCACGCTCTCCAAGGCGCAGAAGTCGGTCTAGGTACTGATGCAGATGAAATTAATGTATGA

Protein sequence

MVAVEAILGFGEEGVGKVVITAPCLMLGNSLNVHICAPRSEMHLFTFADDTGIAEVQVEDEVQGDTILVLVRVLTLDLTPVLGPHHALQGAEVGLGTDADEINV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03878.1Spo03878.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo03878.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03878.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03878.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03878.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005840 ribosome
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0050692 DBD domain binding
molecular_function GO:0008289 lipid binding
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo021050.76Barchart | Table
Spo044090.75Barchart | Table
Spo022080.75Barchart | Table
Spo213940.75Barchart | Table
Spo090030.74Barchart | Table
Spo011280.73Barchart | Table
Spo120840.73Barchart | Table
Spo068730.73Barchart | Table
Spo269100.72Barchart | Table
Spo193940.72Barchart | Table
Spo241900.72Barchart | Table
Spo170390.72Barchart | Table
Spo099980.71Barchart | Table
Spo024700.71Barchart | Table
Spo216290.71Barchart | Table
Spo063850.70Barchart | Table
Spo216050.70Barchart | Table
Spo050900.70Barchart | Table
Spo050520.70Barchart | Table
Spo219820.70Barchart | Table
Spo218180.69Barchart | Table
Spo004440.69Barchart | Table
Spo219840.69Barchart | Table
Spo220910.69Barchart | Table
Spo248700.69Barchart | Table
Spo281730.69Barchart | Table
Spo166790.68Barchart | Table
Spo202310.68Barchart | Table
Spo201860.68Barchart | Table
Spo063410.68Barchart | Table
Spo267260.68Barchart | Table
Spo151600.68Barchart | Table
Spo261080.68Barchart | Table
Spo041140.68Barchart | Table
Spo249360.68Barchart | Table
Spo079690.67Barchart | Table
Spo144320.67Barchart | Table
Spo145130.67Barchart | Table
Spo163780.67Barchart | Table
Spo194410.67Barchart | Table
Spo210770.67Barchart | Table
Spo219690.67Barchart | Table
Spo219850.67Barchart | Table
Spo221390.67Barchart | Table
Spo083800.67Barchart | Table
Spo116930.67Barchart | Table
Spo051840.66Barchart | Table
Spo159940.66Barchart | Table
Spo138150.66Barchart | Table
Spo243990.66Barchart | Table
Spo015390.66Barchart | Table
Spo128420.66Barchart | Table
Spo075450.66Barchart | Table
Spo255070.66Barchart | Table
Spo053330.66Barchart | Table
Spo097110.66Barchart | Table
Spo258080.65Barchart | Table
Spo196160.65Barchart | Table
Spo182120.65Barchart | Table
Spo154770.65Barchart | Table
Spo102530.65Barchart | Table
Spo051100.65Barchart | Table
Spo102110.65Barchart | Table
Spo029910.65Barchart | Table