Spo03896 (gene)

Overview
NameSpo03896
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionAlpha-expansin
Locationchr1 : 46654019 .. 46654965 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTAACCATTGCGGAGTACAAAGCCGGGATTGTACCTGTACAATTTCGCCGAGTTCCTTGTGTTAGGAAGGGTGGCTTGAAATTCCTACTACAAGGTACTCAAGGCTGGTACCTTGTACTAGTGTTTAATGTTGGAGGTGTTGGAAATGTTGCCGATGTTAAGATTAAGCCGTCTAACTCCCAAAATTGGATGCAAATGACGCGTAATTGGGGGCAAAATTGGCAATTCACGAAAAATTTGATAGGGCAAAGTTTGTCATTCCAAGTGACTACTAGTGATGGTAAAATGGTGCAGTCCGATAACGTTGTACCGGCTAATTGGCAATTTGGCCAAACATTTGAAGGCAGGAAAAACTTCTAATTAACATAATTAAGTATGACTTATATTGTTCTTTAAATATTTGGCTTACGAGTTTAAATTGTATGATATAATATTTGGTTGTAAGAGAGATCGGAAAGTTCGATCCTTTTTCAACCAAGACAATTTTTTTTTGGAAATTAAAGTATGCAAATACCAGTTTGACATTCGTGTTTGAATCGTTATTAAGATGGTTGTTTCCCCTTTTTTAGTTTCTCACATGCATCAATAGTTTCTTATTTGTTGTCTTTTCGATCTCTACAGTAATACTCCTATTGATTTGTGATAATTATTGGATACCTATCGTTGGACAACACACACAATTCCTGAATATTTCGTATATCACAATCTTACAACTTTATCTTTTCTAGTACGATTTATAAATCACAACGAAACAATCAGCAGAAGAATCGTGAATCAACATCCTACTTTGCCTATTATTGATCTCATATATTCTGATTACATGAACATCCATTGTTCTATAAGCTTCAAATAATGCAAACAAAACTATGACAAAATTCGTAAGAACCCTTGACATCTATATTTTCCTACCAAATTCTCTCCTCAGAACTAAAAATAACTAG

mRNA sequence

ATGTTCTTAACCATTGCGGAGTACAAAGCCGGGATTGTACCTGTACAATTTCGCCGAGTTCCTTGTGTTAGGAAGGGTGGCTTGAAATTCCTACTACAAGGTACTCAAGGCTGGTACCTTGTACTAGTGTTTAATGTTGGAGGTGTTGGAAATGTTGCCGATGTTAAGATTAAGCCGTCTAACTCCCAAAATTGGATGCAAATGACGCCTTCAAATAATGCAAACAAAACTATGACAAAATTCGTAAGAACCCTTGACATCTATATTTTCCTACCAAATTCTCTCCTCAGAACTAAAAATAACTAG

Coding sequence (CDS)

ATGTTCTTAACCATTGCGGAGTACAAAGCCGGGATTGTACCTGTACAATTTCGCCGAGTTCCTTGTGTTAGGAAGGGTGGCTTGAAATTCCTACTACAAGGTACTCAAGGCTGGTACCTTGTACTAGTGTTTAATGTTGGAGGTGTTGGAAATGTTGCCGATGTTAAGATTAAGCCGTCTAACTCCCAAAATTGGATGCAAATGACGCCTTCAAATAATGCAAACAAAACTATGACAAAATTCGTAAGAACCCTTGACATCTATATTTTCCTACCAAATTCTCTCCTCAGAACTAAAAATAACTAG

Protein sequence

MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPSNSQNWMQMTPSNNANKTMTKFVRTLDIYIFLPNSLLRTKNN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03896.1Spo03896.1mRNA


Homology
[Close]
BLAST of Spo03896.1 vs. NCBI nr
Match: gi|731368350|ref|XP_010696099.1| (PREDICTED: putative expansin-A26 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.5 bits (280), Expect = 4.400e-22
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+ IAEYKAG+VPV+FR++PCV+KGG+KFLLQG   W LVLVFNVGG G+V ++KIK S
Sbjct: 131 MFVKIAEYKAGVVPVKFRKIPCVKKGGMKFLLQGNPNWLLVLVFNVGGAGDVVNMKIKVS 190

Query: 61  NSQNWMQMT 70
           NS NW+QMT
Sbjct: 191 NSNNWLQMT 199
[Close]
BLAST of Spo03896.1 vs. NCBI nr
Match: gi|299889033|dbj|BAJ10399.1| (alpha-expansin [Dianthus caryophyllus])

HSP 1 Score: 103.2 bits (256), Expect = 2.700e-19
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL IA YKAG+VPVQFRRVPCV++GGLKFL+QG Q W   LVFNVGG G+V ++K+K S
Sbjct: 134 MFLNIAPYKAGVVPVQFRRVPCVKQGGLKFLIQGNQWWTNFLVFNVGGAGDVTNMKVKGS 193

Query: 61  NSQNWMQMTPSNNAN 76
           N+ NW+QM+ S   N
Sbjct: 194 NT-NWLQMSRSWGQN 207
[Close]
BLAST of Spo03896.1 vs. NCBI nr
Match: gi|225451697|ref|XP_002276640.1| (PREDICTED: expansin-A23 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 4.300e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+ IA+YKAGI+PVQ+RRV C ++GG+KF ++G + W LVLVFNVGGVG+V++VKIK S
Sbjct: 132 MFVRIAKYKAGIIPVQYRRVRCHKRGGIKFEIKGNRYWVLVLVFNVGGVGDVSNVKIKGS 191

Query: 61  NSQNWMQMT 70
           N+Q W+QM+
Sbjct: 192 NTQ-WLQMS 199
[Close]
BLAST of Spo03896.1 vs. NCBI nr
Match: gi|296082225|emb|CBI21230.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 4.300e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+ IA+YKAGI+PVQ+RRV C ++GG+KF ++G + W LVLVFNVGGVG+V++VKIK S
Sbjct: 234 MFVRIAKYKAGIIPVQYRRVRCHKRGGIKFEIKGNRYWVLVLVFNVGGVGDVSNVKIKGS 293

Query: 61  NSQNWMQMT 70
           N+Q W+QM+
Sbjct: 294 NTQ-WLQMS 301
[Close]
BLAST of Spo03896.1 vs. NCBI nr
Match: gi|848859125|ref|XP_012830473.1| (PREDICTED: expansin-A23-like [Erythranthe guttata])

HSP 1 Score: 95.5 bits (236), Expect = 5.600e-17
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL IA+YKAG+VPV +RRV C +KGG+KF ++G   W LVLV+NVGGVG+V  VKIK S
Sbjct: 139 MFLKIAQYKAGVVPVIYRRVVCWKKGGIKFEIKGNPYWMLVLVYNVGGVGDVTSVKIKGS 198

Query: 61  NSQNWMQMTPSNNAN 76
           +S NW+ M+ S   N
Sbjct: 199 SSNNWIDMSRSWGQN 213
[Close]
BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BB63_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177540 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.100e-22
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+ IAEYKAG+VPV+FR++PCV+KGG+KFLLQG   W LVLVFNVGG G+V ++KIK S
Sbjct: 131 MFVKIAEYKAGVVPVKFRKIPCVKKGGMKFLLQGNPNWLLVLVFNVGGAGDVVNMKIKVS 190

Query: 61  NSQNWMQMT 70
           NS NW+QMT
Sbjct: 191 NSNNWLQMT 199
[Close]
BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Match: D7URZ4_DIACA (Alpha-expansin OS=Dianthus caryophyllus GN=DcEXPA3 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.900e-19
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL IA YKAG+VPVQFRRVPCV++GGLKFL+QG Q W   LVFNVGG G+V ++K+K S
Sbjct: 134 MFLNIAPYKAGVVPVQFRRVPCVKQGGLKFLIQGNQWWTNFLVFNVGGAGDVTNMKVKGS 193

Query: 61  NSQNWMQMTPSNNAN 76
           N+ NW+QM+ S   N
Sbjct: 194 NT-NWLQMSRSWGQN 207
[Close]
BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Match: A5AUC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00600 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-17
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+ IA+YKAGI+PVQ+RRV C ++GG+KF ++G + W LVLVFNVGGVG+V++VKIK S
Sbjct: 132 MFVRIAKYKAGIIPVQYRRVRCHKRGGIKFEIKGNRYWVLVLVFNVGGVGDVSNVKIKGS 191

Query: 61  NSQNWMQMT 70
           N+Q W+QM+
Sbjct: 192 NTQ-WLQMS 199
[Close]
BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Match: A0A022RSW1_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022551mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-17
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL IA+YKAG+VPV +RRV C +KGG+KF ++G   W LVLV+NVGGVG+V  VKIK S
Sbjct: 119 MFLKIAQYKAGVVPVIYRRVVCWKKGGIKFEIKGNPYWMLVLVYNVGGVGDVTSVKIKGS 178

Query: 61  NSQNWMQMTPSNNAN 76
           +S NW+ M+ S   N
Sbjct: 179 SSNNWIDMSRSWGQN 193
[Close]
BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBX5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084010 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.700e-17
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MF+TIAEYKAGIVPVQ+RRVPC ++GG+KFL+ G   + LVL+FNVGG G++ D+KIK S
Sbjct: 121 MFVTIAEYKAGIVPVQYRRVPCAKQGGVKFLVNGNPNFLLVLIFNVGGSGDITDMKIKGS 180

Query: 61  NSQNWMQM 69
            + NW+ M
Sbjct: 181 -TNNWVPM 187
[Close]
BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-15
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 

		  

Query: 2   FLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPSN 61
           FL IA+Y+AGIVPV FRRVPC++KGG++F + G   + LVL+ NVGG G+V  V IK S 
Sbjct: 135 FLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSK 194

Query: 62  SQNWMQMT 70
           +Q+W  M+
Sbjct: 195 TQSWQAMS 202
[Close]
BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.300e-15
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL+IA+YKAGIVPV +RR+PC +KGG++F + G + + LVLV NV G G+V  V +K S
Sbjct: 138 MFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGS 197

Query: 61  NSQ------NWMQMTPSN 73
           N+Q      NW Q   SN
Sbjct: 198 NTQWLDLSRNWGQNWQSN 215
[Close]
BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           +F  IA+YKAG+VPV +RRVPC+R+GG++F + G   + LVLV NVGG G+V  V +K S
Sbjct: 134 VFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGS 193

Query: 61  N------SQNWMQMTPSNN 74
                  S+NW Q   SNN
Sbjct: 194 RTRWQQMSRNWGQNWQSNN 212
[Close]
BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.400e-14
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1 

		  

Query: 2   FLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPSN 61
           FL IA+Y+AGIVPV FRRVPCV+KGG++F + G   + LVLV NV G G+V  V IK S 
Sbjct: 129 FLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSR 188

Query: 62  ------SQNWMQMTPSN 73
                 S+NW Q   SN
Sbjct: 189 TGWQPMSRNWGQNWQSN 205
[Close]
BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.400e-14
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1 

		  

Query: 2   FLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPSN 61
           FL IA+Y+AGIVPV FRRVPCV+KGG++F + G   + LVLV NV G G+V  V IK S 
Sbjct: 129 FLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSR 188

Query: 62  ------SQNWMQMTPSN 73
                 S+NW Q   SN
Sbjct: 189 TGWQPMSRNWGQNWQSN 205
[Close]
BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Match: AT2G40610.1 (expansin A8)

HSP 1 Score: 84.0 bits (206), Expect = 6.000e-17
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 

		  

Query: 2   FLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPSN 61
           FL IA+Y+AGIVPV FRRVPC++KGG++F + G   + LVL+ NVGG G+V  V IK S 
Sbjct: 135 FLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSK 194

Query: 62  SQNWMQMT 70
           +Q+W  M+
Sbjct: 195 TQSWQAMS 202
[Close]
BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Match: AT5G02260.1 (expansin A9)

HSP 1 Score: 81.6 bits (200), Expect = 3.000e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL+IA+YKAGIVPV +RR+PC +KGG++F + G + + LVLV NV G G+V  V +K S
Sbjct: 138 MFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGS 197

Query: 61  NSQ------NWMQMTPSN 73
           N+Q      NW Q   SN
Sbjct: 198 NTQWLDLSRNWGQNWQSN 215
[Close]
BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Match: AT2G03090.1 (expansin A15)

HSP 1 Score: 80.1 bits (196), Expect = 8.600e-16
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           +F  IA+YKAG+VPV +RRVPC+R+GG++F + G   + LVLV NVGG G+V  V +K S
Sbjct: 134 VFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGS 193

Query: 61  N------SQNWMQMTPSNN 74
                  S+NW Q   SNN
Sbjct: 194 RTRWQQMSRNWGQNWQSNN 212
[Close]
BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Match: AT5G56320.1 (expansin A14)

HSP 1 Score: 78.2 bits (191), Expect = 3.300e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           +FL IA+YKAG+VPVQ+RRV C RKGG++F + G   + LVL+ NV G G+V  V IK +
Sbjct: 133 IFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGT 192

Query: 61  N------SQNWMQMTPSN 73
           N      S+NW Q   SN
Sbjct: 193 NTRWQSMSRNWGQNWQSN 210
[Close]
BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Match: AT2G28950.1 (expansin A6)

HSP 1 Score: 78.2 bits (191), Expect = 3.300e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1 

		  

Query: 1   MFLTIAEYKAGIVPVQFRRVPCVRKGGLKFLLQGTQGWYLVLVFNVGGVGNVADVKIKPS 60
           MFL IAEY+AGIVPV FRRVPC ++GG++F + G + + LVLV NV G GN+  + +K +
Sbjct: 137 MFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGT 196

Query: 61  N------SQNWMQMTPSNN 74
           +      S+NW Q   SN+
Sbjct: 197 HTSWMTMSRNWGQNWQSNS 215
The following BLAST results are available for this feature:
BLAST of Spo03896.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731368350|ref|XP_010696099.1|4.4e-2271.0PREDICTED: putative expansin-A... [more]
gi|299889033|dbj|BAJ10399.1|2.7e-1965.3alpha-expansin [Dianthus caryo... [more]
gi|225451697|ref|XP_002276640.1|4.3e-1763.7PREDICTED: expansin-A23 [Vitis... [more]
gi|296082225|emb|CBI21230.3|4.3e-1763.7unnamed protein product [Vitis... [more]
gi|848859125|ref|XP_012830473.1|5.6e-1760.0PREDICTED: expansin-A23-like [... [more]
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BLAST of Spo03896.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BB63_BETVU3.1e-2271.0Uncharacterized protein OS=Bet... [more]
D7URZ4_DIACA1.9e-1965.3Alpha-expansin OS=Dianthus car... [more]
A5AUC8_VITVI3.0e-1763.7Putative uncharacterized prote... [more]
A0A022RSW1_ERYGU3.9e-1760.0Uncharacterized protein (Fragm... [more]
A0A0K9RBX5_SPIOL6.7e-1763.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03896.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EXPA8_ARATH1.1e-1555.8Expansin-A8 OS=Arabidopsis tha... [more]
EXPA9_ARATH5.3e-1552.5Expansin-A9 OS=Arabidopsis tha... [more]
EXP15_ARATH1.5e-1450.6Expansin-A15 OS=Arabidopsis th... [more]
EXPA4_ORYSJ3.4e-1454.5Expansin-A4 OS=Oryza sativa su... [more]
EXPA4_ORYSI3.4e-1454.5Expansin-A4 OS=Oryza sativa su... [more]
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BLAST of Spo03896.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G40610.16.0e-1755.8expansin A8[more]
AT5G02260.13.0e-1652.5expansin A9[more]
AT2G03090.18.6e-1650.6expansin A15[more]
AT5G56320.13.3e-1551.2expansin A14[more]
AT2G28950.13.3e-1549.3expansin A6[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 26..38
score: 2.1E-14coord: 2..15
score: 2.1E-14coord: 38..59
score: 2.1
IPR007117Expansin, cellulose-binding-like domainGENE3D2.60.40.760coord: 22..79
score: 1.3
IPR007117Expansin, cellulose-binding-like domainPFAMPF01357Pollen_allerg_1coord: 30..74
score: 1.
IPR007117Expansin, cellulose-binding-like domainPROFILEPS50843EXPANSIN_CBDcoord: 37..73
score: 8
IPR007117Expansin, cellulose-binding-like domainunknownSSF49590PHL pollen allergencoord: 24..79
score: 5.62
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3D2.40.40.10coord: 1..21
score: 3.
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..69
score: 2.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006574 valine catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019521 D-gluconate metabolic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006552 leucine catabolic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006979 response to oxidative stress
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048868 pollen tube development
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0042793 plastid transcription
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006468 protein phosphorylation
biological_process GO:0046950 cellular ketone body metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046680 response to DDT
biological_process GO:0042908 xenobiotic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006000 fructose metabolic process
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0006013 mannose metabolic process
biological_process GO:0009646 response to absence of light
biological_process GO:0046686 response to cadmium ion
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0009744 response to sucrose
biological_process GO:0010043 response to zinc ion
cellular_component GO:0005618 cell wall
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0005576 extracellular region
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0030267 glyoxylate reductase (NADP) activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003858 3-hydroxybutyrate dehydrogenase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0004746 riboflavin synthase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003723 RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo126880.81Barchart | Table
Spo026490.81Barchart | Table
Spo232280.80Barchart | Table
Spo185780.79Barchart | Table
Spo246300.76Barchart | Table
Spo251020.76Barchart | Table
Spo194310.76Barchart | Table
Spo235580.76Barchart | Table
Spo011350.75Barchart | Table
Spo029180.75Barchart | Table
Spo236260.75Barchart | Table
Spo225830.74Barchart | Table
Spo050120.74Barchart | Table
Spo266100.73Barchart | Table
Spo026960.73Barchart | Table
Spo177400.73Barchart | Table
Spo014480.72Barchart | Table
Spo116350.72Barchart | Table
Spo207560.72Barchart | Table
Spo029790.72Barchart | Table
Spo019250.72Barchart | Table
Spo226830.72Barchart | Table
Spo069530.71Barchart | Table
Spo140160.71Barchart | Table
Spo148300.71Barchart | Table
Spo021820.71Barchart | Table
Spo180800.70Barchart | Table
Spo123540.70Barchart | Table
Spo103730.70Barchart | Table
Spo237120.70Barchart | Table
Spo169510.70Barchart | Table
Spo211440.70Barchart | Table
Spo166410.70Barchart | Table
Spo161730.69Barchart | Table
Spo016320.69Barchart | Table
Spo178600.69Barchart | Table
Spo232320.69Barchart | Table
Spo036380.69Barchart | Table
Spo056530.69Barchart | Table
Spo028900.69Barchart | Table
Spo001990.69Barchart | Table
Spo160790.69Barchart | Table
Spo092320.69Barchart | Table
Spo100300.69Barchart | Table
Spo102840.69Barchart | Table
Spo266970.68Barchart | Table
Spo035230.68Barchart | Table
Spo044250.68Barchart | Table
Spo102990.68Barchart | Table
Spo143380.68Barchart | Table
Spo179860.68Barchart | Table
Spo231540.68Barchart | Table
Spo244250.68Barchart | Table
Spo248470.68Barchart | Table
Spo251700.68Barchart | Table
Spo120220.67Barchart | Table
Spo184560.67Barchart | Table
Spo192590.67Barchart | Table
Spo161880.67Barchart | Table
Spo056570.67Barchart | Table
Spo089970.67Barchart | Table
Spo053070.67Barchart | Table
Spo143730.67Barchart | Table
Spo154470.67Barchart | Table
Spo009660.67Barchart | Table
Spo254050.66Barchart | Table
Spo049540.66Barchart | Table
Spo042000.66Barchart | Table
Spo233180.66Barchart | Table
Spo033100.66Barchart | Table
Spo031490.66Barchart | Table
Spo258040.66Barchart | Table
Spo029810.66Barchart | Table
Spo169600.66Barchart | Table
Spo126590.66Barchart | Table
Spo001650.66Barchart | Table
Spo123010.66Barchart | Table
Spo182310.66Barchart | Table
Spo186940.66Barchart | Table
Spo086200.66Barchart | Table
Spo059150.66Barchart | Table
Spo212540.66Barchart | Table
Spo226270.66Barchart | Table
Spo132810.66Barchart | Table
Spo033620.65Barchart | Table
Spo152730.65Barchart | Table
Spo198360.65Barchart | Table
Spo006770.65Barchart | Table