Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTATCATTCTAGAACTAACAAATAATTAAGATGGTTGTTTCGTCATCTGTTCTTCCTATTAACCCATCTGACCATTTTCAAGAGCTAAACAAAACTATAACATGCAAACAAATCCATGAAAATTACATGGACAGTTCCATTATTGATCTTATCCTCCTTTCGGATTCATCATCAACCCAACACGAAGCCGAATTGCGAAAACTTCAATCCGTTCTTACTTCATGGAGTAGTTTTCAGGTTTGCTTTTGATAAACTTCCAAGAGTTTTATTGCTAGGATATTTGTTGTACTTTCTTAGATGATCATTAGGAAGTTAAGACTCAGTTCTGTTTGGCTTATTTTGACTTATTTTAAACAAAAATAAGTCCAGATAAGTTAATATTATATATAAGTTCAGACAAAATAAGTTGAATAGAACGAAGTCTTAGCTTATTTTTCGCTGCTATGTTGATGTTTTTTCAGCTAATAAATCATGGGTTATCGAGCTCATTACTTAACCAAATTCGTCAAGTTGGGAAGGAATTCTTTGCTCTGCCTTTAGAGGTGAAGCAAAAGCAAAGCAGTACACTCGATTCATATGAAGGGTATGGAGGTGATAGAGTCAAGAATGATAGACTCCGTCTCAAAGTTAGCCCTCTTGATCAAAGAAATCTCAAGATTTGGCCTGAATCTCTACCAAATTTCAGGTGATTTTTAGATGCAATGTATACTCGTAAGTCTATATGTCTTTGGAAACCTACAATGTGGGACATTGCTTATGAATGCCCAACAAACATGGGCTCTGATACCCCATGATAAATCTCATCAAGCCAATTCGAGCCTTATGTCTGAGGAGAATATAAAACTGATAGCTAGGGTTCATCATCAAACCAACTAGCATTTTGACCTATGCAATGCACGAGAGCATTTTGTAAAGTGTTATACGAACTTACATTGCTCAACTTACAATGAATTTAGGTATTAATAAATTTTAAATTGTTTATGCGCGTCCATAAATTTTTGCTTAATGTAGAACATAAATATATAAATAAATAGGACCACGTTTTTTTTATATAGATGTTAAAGTTATTACTAAATCTAACAACCATACATTTAGAAGAAACAATCAACGAAAGTGATAATGTAACATATAATATAACATCAATAGCAAAACAAACAGTTAAGTAAATTACATAAGTAATTGATGAAAATTGAAACTTAGCCATAAAAAAAAAAATTAGACACATAACGTAAAACACACATTACCTCTATAAATGTATGATGATATAAAGTTGATCGATTGTGTAAGTGATATAACGAAAATGATTGTTAGTCAATTTATTTATAAGTAATGAATGGAGATGAGAGGTTGATGATTTATTTTGAGAAGATGGTTAATTTATTATGCTTATTTTTTGGTTAATAATTTTAAATGACTATTAATTCATAAGTACTAATGTCTATTGTTATTGTTATTATTACGAAATATTAATACCATTTTAAGTTAGCTCATTGAGTTTTGATTATTTATTTTGATGGGTGTCTTTTAAGTTTTTTTTGGGTTTTCCCTCTTTTAATATAAGTACATATTAATATTGATGTCTTTTGAGCGTTTTCTATTTTAATAATAAAAAAAAATTAAAAAAATGGGAGATTGATAAGGTGAAGACACATGTCTCATTATCAACAATGGTTTTAGTTTTTAAATACTACTAGGTCTAGATAGAATATGTATAGATCAGTGATAGTGGAATAGTCCACTAATCTTATATGTTAGTAATTAATCTCTCTTTATTTATTAATGTGGGAAAACTAGTCTAATACAGTAATACTCACATGTGGATTATACTAACCTCTATTATATTTAAACATGTCCTATCTTCATGAATATATGATCGATCCCTCGGTTATATTTTACTTCCCTCATATATGTCTTTGTATAGATGTCACACTTGATCTCTGCACTATTCACGTACTTTACTTTGATAAACTTTTGCGTATAGGGAAACATTGGAGGACTACAACACGGAGATAAGTAGAGTACTCGAAATGATCCTGAAGGCCATTGCAAAATCACTAAATATAGAAGAAAACAGGTTCTTTAAAACATGTGGAGGAGAGGAAGGTATAAATATTTATGCAAGATTCAACTATTATCCTCCATGTTCATCGTCATCGGGTCAATTTTTAAGTCTCGAACCGCATTCGGATGGTACTATACTTACCATTCTTCTGCAAGACAAACAAGTTGAAGGCCTTCAAGTTGAGAAAGATAACCAATGGTTTAAAGTTCCAATTGTTCCTGATGCCCTTTTCATCAATATTGGTGACCAGTTAGAGGTAATACTACCTCCGTTTCATAATGATCTTTACAGTTATTATTTGCACAAATAATAAGACAAAAAATTAAGAGTATGTGAAAAGATGAGTAAATATAAGGAAATTTTGTGCAACACTACCTTTAAGTTTGGACGTTTTGTGAATTACTACCTTATAAAAAAGTTTTTTAATTTTGCTACCTTATAAGTTTGTTTAGTTTGAGTAACACTACCTTGTAACAGTTTCTGTCAAATTCCTCCGTTTGTGGGCCCCACCTCCAACGGCTATATTCAACTGCTTAACTCCCTTTCCCCCTTATTTAAACTTCCTGTAAAGTTTTATCAACCACATTCAACCAATTTTTCGGAAAAACATCAAGAAATCTGGGCAATTTTTTTCTCAAAGCAAGATTCGCAATTTGGTTGAGGAATCGAGTAACCTAAAGGTGAGTGCATTAAATTCGTTCTTGTTCTTGAATTTCTGGGTTTATTTTTTCAATTTAGGGTTTTTGTTCTTGTTCAATTTTATTAAATTCGAATCCTTTTGATAAATTTAGCGTTTGAAACCTTTGAATTGTCATGTGAAAACAACTACATTGCAAAATTGGGTTCTTGAATTGACTAAAAATGTGGGTATTCGTGGTTTAAAATATCAATTTTGATCGTTATTTGCAATTTGGGGGTTTTTGATTGAGAAATCAAATACTAATAATTAGTTGTTTTAACTGTTGCAGGATGTCGAGTGGGTCTCCTTGTGCTTCAAAAAAATGTTATTGTGGCATTCCATCCAAGATGTTGACATCGTGGACAACTGATAACCCGGGGAGAAAATTCCTGACTTGTAAGTTCTCTGATGTACACACTGGTAGGAAAGGATGTGGTTGGTTTTATTGGGTTGATCCTGATGTTGTGGAGTGGCAAAGAGTCGTGACGAATGAACTGGTGGTGGAGAAGAGATTGCTGAAAACAGAGTTGAGGGTCATGATGACAGAATTGCAGAAGTTGGAGGATGACAAAGCCCTTCTTGTTGCTGCCAATGAGAGGCTTGAAAGGATATGCAATGGTGGAGTGGCTGGAATGAAGGGGACAAAGGATAAGGGCCAAGAAATTGTCCATTCTGTATTTTGGTTTGTTGTAGGATTAGTTGTTTGTTGTGTGTTGAAGTTTGTAATGAAGTTCCTCTAG TTATCATTCTAGAACTAACAAATAATTAAGATGGTTGTTTCGTCATCTGTTCTTCCTATTAACCCATCTGACCATTTTCAAGAGCTAAACAAAACTATAACATGCAAACAAATCCATGAAAATTACATGGACAGTTCCATTATTGATCTTATCCTCCTTTCGGATTCATCATCAACCCAACACGAAGCCGAATTGCGAAAACTTCAATCCGTTCTTACTTCATGGAGTAGTTTTCAGCTAATAAATCATGGGTTATCGAGCTCATTACTTAACCAAATTCGTCAAGTTGGGAAGGAATTCTTTGCTCTGCCTTTAGAGGTGAAGCAAAAGCAAAGCAGTACACTCGATTCATATGAAGGGTATGGAGGTGATAGAGTCAAGAATGATAGACTCCGTCTCAAAGTTAGCCCTCTTGATCAAAGAAATCTCAAGATTTGGCCTGAATCTCTACCAAATTTCAGGGAAACATTGGAGGACTACAACACGGAGATAAGTAGAGTACTCGAAATGATCCTGAAGGCCATTGCAAAATCACTAAATATAGAAGAAAACAGGTTCTTTAAAACATGTGGAGGAGAGGAAGGTATAAATATTTATGCAAGATTCAACTATTATCCTCCATGTTCATCGTCATCGGGTCAATTTTTAAGTCTCGAACCGCATTCGGATGGTACTATACTTACCATTCTTCTGCAAGACAAACAAGTTGAAGGCCTTCAAGTTGAGAAAGATAACCAATGGTTTAAAGTTCCAATTGTTCCTGATGCCCTTTTCATCAATATTGGTGACCAGATGTCGAGTGGGTCTCCTTGTGCTTCAAAAAAATGTTATTGTGGCATTCCATCCAAGATGTTGACATCGTGGACAACTGATAACCCGGGGAGAAAATTCCTGACTTGTAAGTTCTCTGATGTACACACTGGTAGGAAAGGATGTGGTTGGTTTTATTGGGTTGATCCTGATGTTGTGGAGTGGCAAAGAGTCGTGACGAATGAACTGGTGGTGGAGAAGAGATTGCTGAAAACAGAGTTGAGGGTCATGATGACAGAATTGCAGAAGTTGGAGGATGACAAAGCCCTTCTTGTTGCTGCCAATGAGAGGCTTGAAAGGATATGCAATGGTGGAGTGGCTGGAATGAAGGGGACAAAGGATAAGGGCCAAGAAATTGTCCATTCTGTATTTTGGTTTGTTGTAGGATTAGTTGTTTGTTGTGTGTTGAAGTTTGTAATGAAGTTCCTCTAG ATGGTTGTTTCGTCATCTGTTCTTCCTATTAACCCATCTGACCATTTTCAAGAGCTAAACAAAACTATAACATGCAAACAAATCCATGAAAATTACATGGACAGTTCCATTATTGATCTTATCCTCCTTTCGGATTCATCATCAACCCAACACGAAGCCGAATTGCGAAAACTTCAATCCGTTCTTACTTCATGGAGTAGTTTTCAGCTAATAAATCATGGGTTATCGAGCTCATTACTTAACCAAATTCGTCAAGTTGGGAAGGAATTCTTTGCTCTGCCTTTAGAGGTGAAGCAAAAGCAAAGCAGTACACTCGATTCATATGAAGGGTATGGAGGTGATAGAGTCAAGAATGATAGACTCCGTCTCAAAGTTAGCCCTCTTGATCAAAGAAATCTCAAGATTTGGCCTGAATCTCTACCAAATTTCAGGGAAACATTGGAGGACTACAACACGGAGATAAGTAGAGTACTCGAAATGATCCTGAAGGCCATTGCAAAATCACTAAATATAGAAGAAAACAGGTTCTTTAAAACATGTGGAGGAGAGGAAGGTATAAATATTTATGCAAGATTCAACTATTATCCTCCATGTTCATCGTCATCGGGTCAATTTTTAAGTCTCGAACCGCATTCGGATGGTACTATACTTACCATTCTTCTGCAAGACAAACAAGTTGAAGGCCTTCAAGTTGAGAAAGATAACCAATGGTTTAAAGTTCCAATTGTTCCTGATGCCCTTTTCATCAATATTGGTGACCAGATGTCGAGTGGGTCTCCTTGTGCTTCAAAAAAATGTTATTGTGGCATTCCATCCAAGATGTTGACATCGTGGACAACTGATAACCCGGGGAGAAAATTCCTGACTTGTAAGTTCTCTGATGTACACACTGGTAGGAAAGGATGTGGTTGGTTTTATTGGGTTGATCCTGATGTTGTGGAGTGGCAAAGAGTCGTGACGAATGAACTGGTGGTGGAGAAGAGATTGCTGAAAACAGAGTTGAGGGTCATGATGACAGAATTGCAGAAGTTGGAGGATGACAAAGCCCTTCTTGTTGCTGCCAATGAGAGGCTTGAAAGGATATGCAATGGTGGAGTGGCTGGAATGAAGGGGACAAAGGATAAGGGCCAAGAAATTGTCCATTCTGTATTTTGGTTTGTTGTAGGATTAGTTGTTTGTTGTGTGTTGAAGTTTGTAATGAAGTTCCTCTAG MVVSSSVLPINPSDHFQELNKTITCKQIHENYMDSSIIDLILLSDSSSTQHEAELRKLQSVLTSWSSFQLINHGLSSSLLNQIRQVGKEFFALPLEVKQKQSSTLDSYEGYGGDRVKNDRLRLKVSPLDQRNLKIWPESLPNFRETLEDYNTEISRVLEMILKAIAKSLNIEENRFFKTCGGEEGINIYARFNYYPPCSSSSGQFLSLEPHSDGTILTILLQDKQVEGLQVEKDNQWFKVPIVPDALFINIGDQMSSGSPCASKKCYCGIPSKMLTSWTTDNPGRKFLTCKFSDVHTGRKGCGWFYWVDPDVVEWQRVVTNELVVEKRLLKTELRVMMTELQKLEDDKALLVAANERLERICNGGVAGMKGTKDKGQEIVHSVFWFVVGLVVCCVLKFVMKFL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03985.1 vs. NCBI nr
Match: gi|902235505|gb|KNA23945.1| (hypothetical protein SOVF_019300 [Spinacia oleracea]) HSP 1 Score: 505.4 bits (1300), Expect = 9.400e-140 Identity = 253/255 (99.22%), Postives = 254/255 (99.61%), Query Frame = 1
BLAST of Spo03985.1 vs. NCBI nr
Match: gi|731353048|ref|XP_010687858.1| (PREDICTED: protein SRG1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 334.0 bits (855), Expect = 3.700e-88 Identity = 178/279 (63.80%), Postives = 206/279 (73.84%), Query Frame = 1
BLAST of Spo03985.1 vs. NCBI nr
Match: gi|902110598|gb|KNA03708.1| (hypothetical protein SOVF_206490 [Spinacia oleracea]) HSP 1 Score: 329.7 bits (844), Expect = 7.100e-87 Identity = 180/279 (64.52%), Postives = 207/279 (74.19%), Query Frame = 1
BLAST of Spo03985.1 vs. NCBI nr
Match: gi|731353036|ref|XP_010687852.1| (PREDICTED: protein SRG1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 319.7 bits (818), Expect = 7.300e-84 Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 1
BLAST of Spo03985.1 vs. NCBI nr
Match: gi|902110600|gb|KNA03710.1| (hypothetical protein SOVF_206510 [Spinacia oleracea]) HSP 1 Score: 309.3 bits (791), Expect = 9.900e-81 Identity = 166/267 (62.17%), Postives = 191/267 (71.54%), Query Frame = 1
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWN2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019300 PE=3 SV=1) HSP 1 Score: 505.4 bits (1300), Expect = 6.500e-140 Identity = 253/255 (99.22%), Postives = 254/255 (99.61%), Query Frame = 1
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EIB4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193220 PE=3 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 2.600e-88 Identity = 178/279 (63.80%), Postives = 206/279 (73.84%), Query Frame = 1
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_206490 PE=3 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 4.900e-87 Identity = 180/279 (64.52%), Postives = 207/279 (74.19%), Query Frame = 1
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BN04_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193210 PE=3 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 5.100e-84 Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 1
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8W2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_206510 PE=3 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 6.900e-81 Identity = 166/267 (62.17%), Postives = 191/267 (71.54%), Query Frame = 1
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.300e-32 Identity = 81/225 (36.00%), Postives = 127/225 (56.44%), Query Frame = 1
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.600e-30 Identity = 80/258 (31.01%), Postives = 133/258 (51.55%), Query Frame = 1
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.300e-29 Identity = 84/267 (31.46%), Postives = 137/267 (51.31%), Query Frame = 1
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Match: DIOX3_PAPSO (Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 3.000e-29 Identity = 80/225 (35.56%), Postives = 120/225 (53.33%), Query Frame = 1
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 6.700e-29 Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 1
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Match: AT5G20400.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 196.8 bits (499), Expect = 2.500e-50 Identity = 106/231 (45.89%), Postives = 143/231 (61.90%), Query Frame = 1
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Match: AT5G54000.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 191.4 bits (485), Expect = 1.100e-48 Identity = 102/231 (44.16%), Postives = 142/231 (61.47%), Query Frame = 1
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Match: AT1G49390.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 184.9 bits (468), Expect = 9.900e-47 Identity = 97/231 (41.99%), Postives = 144/231 (62.34%), Query Frame = 1
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Match: AT5G20550.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 181.0 bits (458), Expect = 1.400e-45 Identity = 106/251 (42.23%), Postives = 141/251 (56.18%), Query Frame = 1
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Match: AT3G21420.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein) HSP 1 Score: 151.4 bits (381), Expect = 1.200e-36 Identity = 93/245 (37.96%), Postives = 128/245 (52.24%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03985.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03985.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03985.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03985.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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