Spo04085 (gene)

Overview
NameSpo04085
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 26813923 .. 26814350 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGGAAGCTCAAAACGATTTGTCTTTTCTAGTACTTGAATGAGGATTGGAGAGGGAAGATGAAGTAGAGAAATTAAGCTGTGGAGTATCTATATTCCGTAGCCTTTAGAGCTGGTAGAAGTTGTTATTTTGTGAGTGTTTCTTCAATGTGTACTTTAGAGAGTTCTTTATGATCCTGGAGCTGAGCCGTTACGTAAGTAATCTGGACAATTTTTTAATATGCAGTAACCTGGTTTTTCTGTGTTCAAATGCCTCATTCTCATCTTCCACAAATGAGGCAGGATTTGACCTATTCGACCTAAAATAGGACGAAGAGACCACTATCATTATTGACGATAGTTTTGCTTAGACGGTGGTTCATAGTTCCCCTACCCCTGGTTCTAGGAAAAAGGGTTTTGTTCCGTTGGCTCTCTCTTCCCTGA

mRNA sequence

ATGGATGAGGGAAGCTCAAAACGATTTTTGTTATTTTGTGAGTGTTTCTTCAATGTGTACTTTAGAGAGTTCTTTATGATCCTGGAGCTGAGCCGTTACAGACCACTATCATTATTGACGATAGTTTTGCTTAGACGGTGGTTCATAGTTCCCCTACCCCTGGTTCTAGGAAAAAGGGTTTTGTTCCGTTGGCTCTCTCTTCCCTGA

Coding sequence (CDS)

ATGGATGAGGGAAGCTCAAAACGATTTTTGTTATTTTGTGAGTGTTTCTTCAATGTGTACTTTAGAGAGTTCTTTATGATCCTGGAGCTGAGCCGTTACAGACCACTATCATTATTGACGATAGTTTTGCTTAGACGGTGGTTCATAGTTCCCCTACCCCTGGTTCTAGGAAAAAGGGTTTTGTTCCGTTGGCTCTCTCTTCCCTGA

Protein sequence

MDEGSSKRFLLFCECFFNVYFREFFMILELSRYRPLSLLTIVLLRRWFIVPLPLVLGKRVLFRWLSLP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04085.1Spo04085.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo04085.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04085.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04085.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04085.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0071702 organic substance transport
biological_process GO:0097502 mannosylation
biological_process GO:0006490 oligosaccharide-lipid intermediate biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006486 protein glycosylation
biological_process GO:0030433 ubiquitin-dependent ERAD pathway
biological_process GO:0044238 primary metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0033036 macromolecule localization
biological_process GO:0010467 gene expression
biological_process GO:0009987 cellular process
biological_process GO:0016579 protein deubiquitination
biological_process GO:0048767 root hair elongation
biological_process GO:0051301 cell division
biological_process GO:0050793 regulation of developmental process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0008152 metabolic process
biological_process GO:0006810 transport
biological_process GO:0006909 phagocytosis
biological_process GO:0048731 system development
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0050896 response to stimulus
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0000136 alpha-1,6-mannosyltransferase complex
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0005829 cytosol
molecular_function GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004843 thiol-dependent ubiquitin-specific protease activity
molecular_function GO:0009678 hydrogen-translocating pyrophosphatase activity
molecular_function GO:0052918 dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0052926 dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0008242 omega peptidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo060300.76Barchart | Table
Spo139530.73Barchart | Table
Spo229700.73Barchart | Table
Spo092600.72Barchart | Table
Spo182690.72Barchart | Table
Spo103280.72Barchart | Table
Spo054870.72Barchart | Table
Spo245940.71Barchart | Table
Spo076520.71Barchart | Table
Spo119190.71Barchart | Table
Spo074260.71Barchart | Table
Spo142750.71Barchart | Table
Spo029840.71Barchart | Table
Spo006940.71Barchart | Table
Spo031970.71Barchart | Table
Spo156030.71Barchart | Table
Spo109470.70Barchart | Table
Spo214650.70Barchart | Table
Spo085310.70Barchart | Table
Spo055570.70Barchart | Table
Spo242410.70Barchart | Table
Spo147770.70Barchart | Table
Spo184510.70Barchart | Table
Spo195180.69Barchart | Table
Spo026720.69Barchart | Table
Spo003970.69Barchart | Table
Spo060180.69Barchart | Table
Spo105500.69Barchart | Table
Spo261900.69Barchart | Table
Spo265260.68Barchart | Table
Spo069620.68Barchart | Table
Spo266460.68Barchart | Table
Spo098690.68Barchart | Table
Spo099490.68Barchart | Table
Spo102220.68Barchart | Table
Spo161270.68Barchart | Table
Spo209090.68Barchart | Table
Spo202150.68Barchart | Table
Spo246260.68Barchart | Table
Spo191260.68Barchart | Table
Spo113250.68Barchart | Table
Spo122010.68Barchart | Table
Spo267060.68Barchart | Table
Spo071840.68Barchart | Table
Spo229060.68Barchart | Table
Spo272260.67Barchart | Table
Spo007510.67Barchart | Table
Spo019980.67Barchart | Table
Spo021840.67Barchart | Table
Spo031960.67Barchart | Table
Spo039730.67Barchart | Table
Spo087710.67Barchart | Table
Spo109690.67Barchart | Table
Spo117530.67Barchart | Table
Spo134190.67Barchart | Table
Spo148900.67Barchart | Table
Spo160880.67Barchart | Table
Spo164210.67Barchart | Table
Spo172680.67Barchart | Table
Spo173860.67Barchart | Table
Spo196560.67Barchart | Table
Spo205660.67Barchart | Table
Spo247060.67Barchart | Table
Spo258510.67Barchart | Table
Spo268060.67Barchart | Table
Spo268710.67Barchart | Table
Spo270640.67Barchart | Table
Spo216500.66Barchart | Table
Spo006730.66Barchart | Table
Spo216930.66Barchart | Table
Spo086060.66Barchart | Table
Spo263930.66Barchart | Table
Spo158650.66Barchart | Table
Spo071990.66Barchart | Table
Spo135790.66Barchart | Table
Spo233550.66Barchart | Table
Spo196350.66Barchart | Table
Spo119930.66Barchart | Table
Spo236790.66Barchart | Table
Spo239080.66Barchart | Table
Spo242020.66Barchart | Table
Spo104160.66Barchart | Table
Spo013130.66Barchart | Table
Spo215950.66Barchart | Table
Spo007230.66Barchart | Table
Spo248900.66Barchart | Table
Spo018730.65Barchart | Table
Spo202420.65Barchart | Table
Spo092660.65Barchart | Table
Spo055960.65Barchart | Table
Spo047030.65Barchart | Table
Spo022030.65Barchart | Table
Spo250130.65Barchart | Table
Spo169190.65Barchart | Table
Spo021150.65Barchart | Table
Spo153670.65Barchart | Table
Spo121560.65Barchart | Table