Spo04128 (gene) | SpinachBase

Overview


Name	Spo04128
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribonuclease III
Location	SpoScf_00523 : 173820 .. 176743 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTAAAGTGAAAGTAGCGTTAGGTTTTCACTGCACAGAAAAGTAGAAAACTGAAGACGCTCTGGAATTGGATTCTCCACTTTGATCACAAAAAATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGGTTTAATTCTTCTCTAGACTCTAATTCTTCTCGAAACCCCCGAAATTGCCGAAAACACGTTTTGTTAATTTTTGAACTTAAACCCTTTCTTTGAATTTAATTTAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGAGTACTTTCTTTCATCTCTTTCTTTCTAATTTTGTGTTGATATTTTACTGTTACTTATGCCCAACTGAAATAGACTGTAAATTGGTGTAGTAAGTGAAGAAATTGTTAAAGATGAACAAGAAATGAGGGTAATTGATTGGTAAAGATGATAAATCAACTAATTGACCGGGAATTGCTCCAAGTCACTCGAACCGGACCCGATCACTCGACTTGACCAGCTCTAGTTAAAAGATTCAGTTAGCTAGTTTTCTTGATGCTGTTTTTACCAATGCAACTTATAAATCATGATAGAGAAAGGTATAAATGGTACTTGGGTCAAAAATTGTTTCTCCATTTGCCTTAATTTCTAATGATGTTGATGTTAGGATGGGTGGATTTATTTTAATCTAAGTTATTTGGATTACTTGATTAAACCCAAAGCAATGATGATCCAACCATTCAAACTTGAGACTAGATATAGATAATAGATGACTTCATGACCGACTCTTAGATACACAATTTCATGAGACTGAGTGTCCAAATTTTATGTTTGTTGTTGTTAGTTTTTTACGGAATGCCTATTTGGCTACATACTTAAAATAACACTGTTCTTGAAGTAGGAAGATTCAAAATGCCTGTTTGTGCAAGGGAGAGTGAGTTTGAAATTTGGTAGTTTTTTGAAGTGTTGTCAACCTCTTGGAATATAGTTGGTCCCCTTTGTGAATATAGTTAGAAGGAGAAAGGAAGTGTGGATTTGGAGAATTGCAATTGGAAACTCATCATTTCTAGCGTGAGTCATTTAGTCTTGTTCGCGTGTTCGTTACTGTCTTAGACCATGCTGATATACGGCTGAATCACCAAGAGGAAGAGCTTGAGTGGTCATAACTTATACGAGATAACCTATGGTAGTTGTCCCCTTTCTATGGTTCCTCCACCTCATTTCACCTGGACTCCGGAATCATGAACCATGACTTGGGGCTCGAGGATGGCCCACAGCCTGTGTGGTAATGTGGTCATTCCTCGGCCCTCTTCATCCCATGAACGAGGGGATTTCAGTTCATTCTATTCTCTCTTGTAGACATCAATGCTCATCACCTCTCGCGGATGTTTTCAGCTGAATGAGGCTCCATTTGAGGTTCAAAGTAGGAAGATAGATAATCAAATGAGATACATTTGGTATACGGAGTACAAATAATTTGTCCTTCAAATTTTGACTCTCTTGTTTTTCCTATGGATGCCTGGGGTTTGTGAAACGTTTTGTGGTTATTGAGGAGAGAATATTTGATAACTGACGAGCAACTGATCATCCCTGAATTTTTCCTAAACAGAATGCCAGCTTTTAAATATGTGCATTTTATTGTCATTTGAATGTTCACACTTCTCTTCGGCATAACTGGTTCCGAATTGAGCATGGAATTGTTTGAGTGATTGGATTTCCTTCTTCATTGCAGCTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAGGTAAGCCTCAGAACTATAAATGGCTGCATCCTACTATGAACTCATGTTATGTGAATCATTTCTGTATATTGTATGGAGTATTAGCTTTATGTATACCGTAGAAGTAGTATGACCGGAAACTCCATTCTGAATCTGTATTACTCTGAATCTTTTGTGATGCTAACATAGTCTTATCTATGGTTCTTAATAAAAGTACTGTTGTTTATGTGTGGGCCCAAACTTACATCTCTATCCTACCGGAGTACTTTGTCGGAATGCAGATGAATGTCTATTTCAGAGTCTTTTGTTATCTTTGAAGGAAAAATGCATTGTGATCATCCTGTATGTCATCTTGAAAATGACATTTTAGATTCACAGAACCACTGAGATATTCCCTGGTTGTCATTTGATTTTAGATTTGTTAGGTTTACCTTAGAGCCTGTCTCCAGGTTGGTGGTGATTGTTGAATCTGGAAACAGGCTATTCGCTATTAGAAAAGTACAGCTCAATGGTAATAAGATTGCCGGACTAATTCCTTTTAAAAGTCTTAAGTTTAACAAGTCTATTAGTTGCTAAATCCTGTTTCTACCGTTTCCTGTCCTAGGTTCATGCATGAACAACACTGAAGGATTAAGGGCATGTTTGGTATACACTTAGGAAATGAAATGGAAAGGGTAGGGTTAGTATTACCAATATTAGTTGTTTGGTATATCTTAGGAAATGAATCACTTGTAACAAATTGG

mRNA sequence

TTGTTAAAGTGAAAGTAGCGTTAGGTTTTCACTGCACAGAAAAGTAGAAAACTGAAGACGCTCTGGAATTGGATTCTCCACTTTGATCACAAAAAATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGACTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAGGTTCATGCATGAACAACACTGAAGGATTAAGGGCATGTTTGGTATACACTTAGGAAATGAAATGGAAAGGGTAGGGTTAGTATTACCAATATTAGTTGTTTGGTATATCTTAGGAAATGAATCACTTGTAACAAATTGG

Coding sequence (CDS)

ATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGACTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAG

Protein sequence

MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVHTRTGELAADF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04128.1	Spo04128.1	mRNA

Homology

[Close]

BLAST of Spo04128.1 vs. NCBI nr
Match: gi|902163620|gb|KNA06856.1| (hypothetical protein SOVF_177200 isoform A [Spinacia oleracea])

HSP 1 Score: 362.1 bits (928), Expect = 6.100e-97
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 190

[Close]

BLAST of Spo04128.1 vs. NCBI nr
Match: gi|902163621|gb|KNA06857.1| (hypothetical protein SOVF_177200 isoform B [Spinacia oleracea])

HSP 1 Score: 354.0 bits (907), Expect = 1.600e-94
Identity = 188/190 (98.95%), Postives = 188/190 (98.95%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAI  QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAI--QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 188

[Close]

BLAST of Spo04128.1 vs. NCBI nr
Match: gi|731335456|ref|XP_010678735.1| (PREDICTED: uncharacterized protein LOC104894246 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 282.3 bits (721), Expect = 6.100e-73
Identity = 151/188 (80.32%), Postives = 163/188 (86.70%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MD R A CFAIL+L   TSSAIQ  IG RDE  K  +IT  SPFS ALETLQKQI+Y+F 
Sbjct: 1   MDHRIAACFAILSLLTVTSSAIQ--IGVRDEVSK-DVITKYSPFSTALETLQKQINYTFD 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSV+FRYLLDDID SSK+LN +IAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVSFRYLLDDIDTSSKSLNLKIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSC+VDGMRLGLHKV+RVSH TNSTTPA+VCG+FRAIFGAVALDSG SD AAKVF NVH
Sbjct: 121 ESSCSVDGMRLGLHKVVRVSHNTNSTTPAIVCGSFRAIFGAVALDSGNSDDAAKVFWNVH 180

Query: 181 TRTGELAA 189
           TR G+ AA
Sbjct: 181 TRRGQFAA 185

[Close]

BLAST of Spo04128.1 vs. NCBI nr
Match: gi|297733813|emb|CBI15060.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 208.0 bits (528), Expect = 1.500e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1

		  
Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 4   FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 63

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 64  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 123

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 124 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 173

[Close]

BLAST of Spo04128.1 vs. NCBI nr
Match: gi|731425278|ref|XP_002280078.2| (PREDICTED: uncharacterized protein NFD2 [Vitis vinifera])

HSP 1 Score: 208.0 bits (528), Expect = 1.500e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1

		  
Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 19  FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 78

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 79  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 138

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 139 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 188

[Close]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177200 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 4.200e-97
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 190

[Close]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177200 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.100e-94
Identity = 188/190 (98.95%), Postives = 188/190 (98.95%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAI  QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAI--QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 188

[Close]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAD1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116710 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.200e-73
Identity = 151/188 (80.32%), Postives = 163/188 (86.70%), Query Frame = 1

		  
Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MD R A CFAIL+L   TSSAIQ  IG RDE  K  +IT  SPFS ALETLQKQI+Y+F 
Sbjct: 1   MDHRIAACFAILSLLTVTSSAIQ--IGVRDEVSK-DVITKYSPFSTALETLQKQINYTFD 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSV+FRYLLDDID SSK+LN +IAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVSFRYLLDDIDTSSKSLNLKIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSC+VDGMRLGLHKV+RVSH TNSTTPA+VCG+FRAIFGAVALDSG SD AAKVF NVH
Sbjct: 121 ESSCSVDGMRLGLHKVVRVSHNTNSTTPAIVCGSFRAIFGAVALDSGNSDDAAKVFWNVH 180

Query: 181 TRTGELAA 189
           TR G+ AA
Sbjct: 181 TRRGQFAA 185

[Close]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: D7SHV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08000 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.000e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1

		  
Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 4   FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 63

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 64  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 123

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 124 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 173

[Close]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QFA7_GLYSO (Ribonuclease 3 OS=Glycine soja GN=glysoja_006885 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.600e-50
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1

		  
Query: 34  KTQIITTNSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETS 93
           K ++   +SPFS ALETLQKQ+ Y+F+ IDLLRRAMTHASFSEENN+A +ILG S+IETS
Sbjct: 31  KLRLKPLSSPFSTALETLQKQLGYTFKSIDLLRRAMTHASFSEENNKAFAILGASVIETS 90

Query: 94  VAFRYLLDDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 153
           V+F  L  D+D+SSK LNR ++++ NV+SSCAVDG RLGLHKV+RVS KTNS+ PAVVCG
Sbjct: 91  VSFHLLSRDVDLSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSAPAVVCG 150

Query: 154 AFRAIFGAVALDSGKSDAAAKVFLNVH 181
           AFRAIFGAVA+D+GKSD A  VF N+H
Sbjct: 151 AFRAIFGAVAIDTGKSDDAGNVFWNLH 177

[Close]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: NFD2_ARATH (Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana GN=NFD2 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.500e-42
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 1

		  
Query: 41  NSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLL 100
           +SPF+  L  LQ QI Y F  I+LLRRAMTHASFS+ENN+ALSI GT IIET+V+ ++L 
Sbjct: 41  SSPFATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLA 100

Query: 101 DDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFG 160
            DIDISSK L R I+EV NVESSCA+DG RLGL K++RVS KT+++  A++C  FRAIFG
Sbjct: 101 KDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFG 160

Query: 161 AVALDSGKSDAAAKVFLNVH-TRTGELAA 189
           A+A+D+G  D A KVF  VH  R G L +
Sbjct: 161 AIAIDAGTVDEAIKVFWKVHGARAGRLVS 189

[Close]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_THIDA (Ribonuclease 3 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rnc PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-7
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1

		  
Query: 51  LQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDI-DISSKT 110
           LQ+ + Y+F R  LL++A+TH S+   NN  L  LG S++  SVA R L D   D+   +
Sbjct: 10  LQQALGYTFSRSGLLQQALTHRSYGALNNERLEFLGDSVLNCSVA-RALYDAFPDLPEGS 69

Query: 111 LNREIAEVCNVESSCAVDG-MRLGLHKVLRVSH----KTNSTTPAVVCGAFRAIFGAVAL 170
           L+R  A +   E+   + G +RLG    LR+            P+++  A  ++FGAV L
Sbjct: 70  LSRLRANLVRQETLAEIAGALRLG--DSLRLGEGELKSGGFRRPSILADALESLFGAVFL 129

Query: 171 DSGKSDA 172
           D+G  +A
Sbjct: 130 DAGFDEA 133

[Close]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_PHEZH (Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1

		  
Query: 47  ALETLQKQIDYSFQRIDLLRRAMTHASFSE-----ENNRALSILGTSIIETSVAFRYLLD 106
           A+  L+++I Y F   DLL RA+THAS  +      +N  L  LG  ++    A R +  
Sbjct: 7   AVAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMAL 66

Query: 107 DIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNST----TPAVVCGAFRA 166
           D D     ++R +A + N   +CA    R GL + LR+S          + AV+  A  A
Sbjct: 67  DPDAREGEMSRLLASLVNYH-ACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEA 126

Query: 167 IFGAVALDSGKSDAAA 174
           +  A+ +D G   A A
Sbjct: 127 LIAALYIDGGLETARA 141

[Close]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_CUPMC (Ribonuclease 3 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 1

		  
Query: 46  IALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYL-----L 105
           + L+ LQ+++ Y F + +LL++A+TH S S ++N  L  LG S++  +VA         L
Sbjct: 1   MTLDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKL 60

Query: 106 DDIDISSKTLN-------REIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 165
           D+ D+S    N        EIA++  +      D +RLG  ++     +     P+++  
Sbjct: 61  DEGDLSRVRANLVKQQALYEIAQMLQLS-----DALRLGEGELKSGGFR----RPSILAD 120

Query: 166 AFRAIFGAVALDSGKSDAAAKV 176
           A  AI GAV LD+G   A A +
Sbjct: 121 ALEAIVGAVFLDAGFDAARALI 133

[Close]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_RALPJ (Ribonuclease 3 OS=Ralstonia pickettii (strain 12J) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 1

		  
Query: 46  IALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYL-----L 105
           ++L+ LQ+++ Y F + +LL++A+TH S S  +N  L  LG SI+  +VA         L
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKL 60

Query: 106 DDIDISSKTLN-------REIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 165
           D+ D+S    N        EIA++  +      D +RLG  ++     +     P+++  
Sbjct: 61  DEGDLSRVRANLVKQQALYEIAQMLQLP-----DALRLGEGELKSGGFR----RPSILAD 120

Query: 166 AFRAIFGAVALDSG 168
           A  AIFGAV LD G
Sbjct: 121 ALEAIFGAVFLDGG 125

[Close]

BLAST of Spo04128.1 vs. TAIR (Arabidopsis)
Match: AT1G24450.1 (Ribonuclease III family protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.400e-43
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 1

		  
Query: 41  NSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLL 100
           +SPF+  L  LQ QI Y F  I+LLRRAMTHASFS+ENN+ALSI GT IIET+V+ ++L 
Sbjct: 41  SSPFATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLA 100

Query: 101 DDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFG 160
            DIDISSK L R I+EV NVESSCA+DG RLGL K++RVS KT+++  A++C  FRAIFG
Sbjct: 101 KDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFG 160

Query: 161 AVALDSGKSDAAAKVFLNVH-TRTGELAA 189
           A+A+D+G  D A KVF  VH  R G L +
Sbjct: 161 AIAIDAGTVDEAIKVFWKVHGARAGRLVS 189

The following BLAST results are available for this feature:

BLAST of Spo04128.1 vs. NCBI nr
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
BLAST of Spo04128.1 vs. TAIR (Arabidopsis)

BLAST of Spo04128.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902163620\|gb\|KNA06856.1\|	6.1e-97	100.	hypothetical protein SOVF_1772...	[more]
gi\|902163621\|gb\|KNA06857.1\|	1.6e-94	98.9	hypothetical protein SOVF_1772...	[more]
gi\|731335456\|ref\|XP_010678735.1\|	6.1e-73	80.3	PREDICTED: uncharacterized pro...	[more]
gi\|297733813\|emb\|CBI15060.3\|	1.5e-50	67.0	unnamed protein product [Vitis...	[more]
gi\|731425278\|ref\|XP_002280078.2\|	1.5e-50	67.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QJW2_SPIOL	4.2e-97	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QHW2_SPIOL	1.1e-94	98.9	Uncharacterized protein OS=Spi...	[more]
A0A0J8CAD1_BETVU	4.2e-73	80.3	Uncharacterized protein OS=Bet...	[more]
D7SHV0_VITVI	1.0e-50	67.0	Putative uncharacterized prote...	[more]
A0A0B2QFA7_GLYSO	6.6e-50	69.3	Ribonuclease 3 OS=Glycine soja...	[more]

BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
NFD2_ARATH	2.5e-42	61.0	Protein NUCLEAR FUSION DEFECTI...	[more]
RNC_THIDA	1.5e-7	34.6	Ribonuclease 3 OS=Thiobacillus...	[more]
RNC_PHEZH	9.9e-7	30.8	Ribonuclease 3 OS=Phenylobacte...	[more]
RNC_CUPMC	9.9e-7	30.2	Ribonuclease 3 OS=Cupriavidus ...	[more]
RNC_RALPJ	9.9e-7	32.0	Ribonuclease 3 OS=Ralstonia pi...	[more]

BLAST of Spo04128.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT1G24450.1	1.4e-43	61.0	Ribonuclease III family protei...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000999	Ribonuclease III domain	GENE3D	1.10.1520.10		coord: 48..178 score: 6.3
IPR000999	Ribonuclease III domain	PFAM	PF14622	Ribonucleas_3_3	coord: 63..175 score: 5.1
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 63..188 score: 8.8
IPR000999	Ribonuclease III domain	PROFILE	PS50142	RNASE_3_2	coord: 48..167 score: 1
IPR000999	Ribonuclease III domain	unknown	SSF69065	RNase III domain-like	coord: 41..179 score: 3.14
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 42..180 score: 5.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051607	defense response to virus
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0006281	DNA repair
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0051301	cell division
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0006396	RNA processing
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0008152	metabolic process
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0016363	nuclear matrix
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005819	spindle
molecular_function	GO:0016881	acid-amino acid ligase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08541	0.74	Barchart \| Table
Spo16082	0.72	Barchart \| Table
Spo10111	0.70	Barchart \| Table
Spo24809	0.70	Barchart \| Table
Spo10814	0.70	Barchart \| Table
Spo10784	0.70	Barchart \| Table
Spo21388	0.69	Barchart \| Table
Spo01823	0.69	Barchart \| Table
Spo12225	0.69	Barchart \| Table
Spo01146	0.68	Barchart \| Table
Spo02254	0.68	Barchart \| Table
Spo05939	0.68	Barchart \| Table
Spo07319	0.68	Barchart \| Table
Spo07974	0.68	Barchart \| Table
Spo10673	0.68	Barchart \| Table
Spo18709	0.68	Barchart \| Table
Spo19687	0.68	Barchart \| Table
Spo20011	0.68	Barchart \| Table
Spo21732	0.68	Barchart \| Table
Spo22386	0.68	Barchart \| Table
Spo21297	0.67	Barchart \| Table
Spo01663	0.67	Barchart \| Table
Spo26807	0.67	Barchart \| Table
Spo05387	0.67	Barchart \| Table
Spo23771	0.67	Barchart \| Table
Spo22750	0.67	Barchart \| Table
Spo24601	0.67	Barchart \| Table
Spo24752	0.67	Barchart \| Table
Spo19757	0.67	Barchart \| Table
Spo08202	0.67	Barchart \| Table
Spo20900	0.67	Barchart \| Table
Spo02791	0.66	Barchart \| Table
Spo13440	0.66	Barchart \| Table
Spo01728	0.66	Barchart \| Table
Spo16502	0.66	Barchart \| Table
Spo17701	0.66	Barchart \| Table
Spo21967	0.66	Barchart \| Table
Spo23733	0.66	Barchart \| Table
Spo07861	0.66	Barchart \| Table
Spo24089	0.66	Barchart \| Table
Spo03192	0.66	Barchart \| Table
Spo17123	0.65	Barchart \| Table
Spo27362	0.65	Barchart \| Table
Spo01313	0.65	Barchart \| Table
Spo02071	0.65	Barchart \| Table