Spo04185 (gene)

Overview
NameSpo04185
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDEAD/DEAH box RNA helicase family protein
LocationSpoScf_02429 : 4282 .. 7009 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGAAATGAAGCCATACAGAGAACAAAGTTCCTAATGCAGAAAAGTTTGTCGCATGGTGCCCCCAGCCCAAAACTGTCCAAAATAATAGAAATTTTAGTAGATCATTTCAGTATGCATCTCAATTCTTCATTTCATTTTTTGATCTGGTGTTATTCTTGGTATATAGCAACTTAGATTCTATTAGCATCATTGCATCAGCATGCGTGTCATTAATATGTTTAGTGGACCTAGCTCCTGAACTATTCTTTCCTTGAGCTATCTGTCAAAAATCATTCGGAGGACATGCAGTGGTATCCATCTTCTGAGTAAGGTAGGGTATATGTGCACTGTAAATCTGCTTCAGGATATTAGAAACCAAGGACATTTTCTTGCAGAAATTAGACGGCGTCAATCAGCTGATTGCATAATATAAGGAGTTATTTGGGTAGAAAGAAGCCTTTTCCACATTTGCTTTTACATTTGTCTTCACATCACTTCTAGCATTTAGGTCTTTGTCATAAGATGTTCTACATATTTACTTACAGCTGATTCATCTTCGTTATAGACTTATAACTAATAAAAAACAATGCTTTCGTTTATATTTGGTGACCAAATTGAACTCAATAAGACGTTGAGATAAGTTTTCATGTTCGAGAGGGATAGAGATAGAGTGACTATGAGACGTTGAGATAGAGTGACTATGAGACGTTGAGATAGAGTGACTATGAGATAAGTTTTCATGTTCTTTAGCGCAGACTAGAATAAGTAAGCAACTCCAGAGAAGTCTTATCACATTCATGTTTTGCTGTAGATGTCAAATTCCTCTGAAAACAGTAAAAACACAAAAAGGCCTAGGTGATAGGTCTAAGAGTGCCTAAAGGTGTGTAATTTTGGGAATATTTTATTTCCAATTAATTGTTGTTTCGTTGTTTGTCTGGTTGAATAGTTGATTTATTCAGCATGTTGATTATTTCAGAGGTTTTTTCAATTATAATTATGGATTTTGCTGATGGTTTTCGTATTAGATCTAGCTAATTAGATTAACTATATTTGGGATTGTAGGTTGTAATCAACTGATATTGTTGTACTACTTGTGGTATCTCGAGGGTTTCAAATCCTACGTTCATTGGTGAATCTCGCATTATATCTTTGTTCCTAGTTGATGCTTGATTTTGGTAAATCTTGAATTTCAGTTATTTTGATGTCTCGTAACTTGTTTGTAGATACTTCAAGGGGCCAAAACTTCTTGTTGATTAACTAGACTATGACTATTCGTTGGACATGTGGGCCTTGGTTGTATGTTTGCTGGAATGGTGAGTAGTAGTTCTCATCTTAGACGTGAATTACTCAGTACGACTCCATTTTTTTTATAGATATTCCGGAAAGAGGCATTCTTTTATGGTCATGACAATCATGACCAACTTGTACAATTTGCAAAGGTATGCTTCTTTGCCACACAAATGAATTTTATGGTTCATAATTCTTTTTCATGATGCTAGTTCTGTTTCTTTTGGCATTACTGTACCTTTGAAATTTCACTCGCTGTGGGAATTGGTTCAGCAAGGAAAGAAAGGCAGGAAACAGCATTGAAGTGTTGCAAAAGTAGTGATAGGAGATATTTTTACGGGATAAAATGCAGTAGCCACTTACAATAAAGTCTTTCCTATTGTGAGCTTGTGTTATCTTACTTATCTGTAAACCAAGATTCCATTTTCCACGTATACTTCCCCCTTCCCCTGTTTCTAAGTTTGTTCTGTATGTGACAAAGGTTGACCTGTTATGACCATTCTACCGAAACTGAACTTGAAAATAGATGGTTTGGTTAAGGTTTTGAATCCGTTTCAACGGGTTGACATCAGTGAAATATTCAATCAATGGTTAGATTCATGTTGGAACTTATTGGCTGAAGTCTAAATACCTATTGTTTGTGTGTGCGTGTGCAGATGTTTGTATGCACGTGTGTGATAGTAAACTAATTGGTGAATAATATTACGCAGCTTCAATTCAGCATTTCAGCATTATTACACCAGTGATTTCAAAAAATTTCCTTTCTAGTAGCAAGACTGGCAGAGGGGTGGGGGGACATCTAAAATAGTTTCTTCCTTCGATGAAAGCTAAGTTAAAGTAGGGCTCCAAATGGAAGGGAGAAGAGGGAAACCCAATTGTTGGGATACAGCTTGAGACTAGACCCTTATTCTTGTCAAAAACACCAGTGTGGTATGCTGTGGAGTCGAGCAAGCAGTTGGCTGCAGGGTTGATTAATCTTGGTGACATGAGCTACAAAACATTCTCTAAGTATTGTAATGAACTTGTTGGGATGGTGAGTCTTAGAATGCAAGACCTTGCAATTCCCATGCTTTGGATAATGTTTTAAGGATTCCAGATTATTCTTCATGTTTTGTGTAGGAGGAGGATAATAATTTTTGTTTGTTTTTCTCCATTTTTATTTCCTTGTGTTTTTTGAGCACAATATAATGGTTTGTTTTTCTTCTTGACAACCATCCAATAAGTCTCCTCCAGTTATGTAAATGTGTACTTTATGTTTTGATGATGACATTATGAAGGCTAGTACCTAGTAGGCTAGTATCTATGAATTGTGCAGTATTTGTTTTTGTAAAATGAAATGACTATTTACAGCGCACACTGTAAAATAGAATGCTGCAAATAACACGTTTTACAAGGCGTGTGAAACAAGGCGCGTTATAATTAGTGTCTTTTTATAACCCATAGCAAAGAAGGCGCC

mRNA sequence

ATGAGTAGAAATGAAGCCATACAGAGAACAAAGTTCCTAATGCAGAAAAGTTTGTCGCATGGTGCCCCCAGCCCAAAACTGTCCAAAATAATAGAAATTTTAGTAGATCATTTCAGTTGTAATCAACTGATATTGTTGTACTACTTGTGGTATCTCGAGGGTTTCAAATCCTACGTTCATTGATACTTCAAGGGGCCAAAACTTCTTGTTGATTAACTAGACTATGACTATTCGTTGGACATGTGGGCCTTGGTTGTATGTTTGCTGGAATGGTGAGTAGTAGTTCTCATCTTAGACGTGAATTACTCAGTACGACTCCATTTTTTTTATAGATATTCCGGAAAGAGGCATTCTTTTATGGTCATGACAATCATGACCAACTTGTACAATTTGCAAAGCAAGGAAAGAAAGGCAGGAAACAGCATTGAAGTGTTGCAAAAGTAGTGATAGGAGATATTTTTACGGGATAAAATGCAGTAGCCACTTACAATAAAGTCTTTCCTATTGTGAGCTTGTGTTATCTTACTTATCTGTAAACCAAGATTCCATTTTCCACGTATACTTCCCCCTTCCCCTGTTTCTAAGTTTGTTCTGTATGTGACAAAGGTTGACCTGTTATGACCATTCTACCGAAACTGAACTTGAAAATAGATGGTTTGGTTAAGGTTTTGAATCCGTTTCAACGGGTTGACATCAGTGAAATATTCAATCAATGGTTAGATTCATGTTGGAACTTATTGGCTGAAGTCTAAATACCTATTGTTTGTGTGTGCGTGTGCAGATGTTTGTATGCACGTGTGTGATAGTAAACTAATTGGTGAATAATATTACGCAGCTTCAATTCAGCATTTCAGCATTATTACACCAGTGATTTCAAAAAATTTCCTTTCTAGTAGCAAGACTGGCAGAGGGGTGGGGGGACATCTAAAATAGTTTCTTCCTTCGATGAAAGCTAAGTTAAAGTAGGGCTCCAAATGGAAGGGAGAAGAGGGAAACCCAATTGTTGGGATACAGCTTGAGACTAGACCCTTATTCTTGTCAAAAACACCAGTGTGGTATGCTGTGGAGTCGAGCAAGCAGTTGGCTGCAGGGTTGATTAATCTTGGTGACATGAGCTACAAAACATTCTCTAAGTATTGTAATGAACTTGTTGGGATGGTGAGTCTTAGAATGCAAGACCTTGCAATTCCCATGCTTTGGATAATGTTTTAAGGATTCCAGATTATTCTTCATGTTTTGTGTAGGAGGAGGATAATAATTTTTGTTTGTTTTTCTCCATTTTTATTTCCTTGTGTTTTTTGAGCACAATATAATGGTTTGTTTTTCTTCTTGACAACCATCCAATAAGTCTCCTCCAGTTATGTAAATGTGTACTTTATGTTTTGATGATGACATTATGAAGGCTAGTACCTAGTAGGCTAGTATCTATGAATTGTGCAGTATTTGTTTTTGTAAAATGAAATGACTATTTACAGCGCACACTGTAAAATAGAATGCTGCAAATAACACGTTTTACAAGGCGTGTGAAACAAGGCGCGTTATAATTAGTGTCTTTTTATAACCCATAGCAAAGAAGGCGCC

Coding sequence (CDS)

ATGAGTAGAAATGAAGCCATACAGAGAACAAAGTTCCTAATGCAGAAAAGTTTGTCGCATGGTGCCCCCAGCCCAAAACTGTCCAAAATAATAGAAATTTTAGTAGATCATTTCAGTTGTAATCAACTGATATTGTTGTACTACTTGTGGTATCTCGAGGGTTTCAAATCCTACGTTCATTGA

Protein sequence

MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCNQLILLYYLWYLEGFKSYVH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04185.1Spo04185.1mRNA


Homology
[Close]
BLAST of Spo04185.1 vs. NCBI nr
Match: gi|902240583|gb|KNA26016.1| (hypothetical protein SOVF_000050 [Spinacia oleracea])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCN 42
           MSRNEAIQRTK LMQKSLSHGAPSPKLSK+IEILVDHF+ N
Sbjct: 437 MSRNEAIQRTKLLMQKSLSHGAPSPKLSKMIEILVDHFTAN 477
[Close]
BLAST of Spo04185.1 vs. NCBI nr
Match: gi|731310894|ref|XP_010680843.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 72.0 bits (175), Expect = 4.000e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCN 42
           MSRNEAIQR K LMQKSLSHGAPSPKLSK+IE+LVDHF  N
Sbjct: 433 MSRNEAIQRAKVLMQKSLSHGAPSPKLSKMIEVLVDHFRRN 473
[Close]
BLAST of Spo04185.1 vs. NCBI nr
Match: gi|731310896|ref|XP_010680886.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 72.0 bits (175), Expect = 4.000e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCN 42
           MSRNEAIQR K LMQKSLSHGAPSPKLSK+IE+LVDHF  N
Sbjct: 433 MSRNEAIQRAKVLMQKSLSHGAPSPKLSKMIEVLVDHFRRN 473
[Close]
BLAST of Spo04185.1 vs. NCBI nr
Match: gi|297846616|ref|XP_002891189.1| (hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 62.8 bits (151), Expect = 2.400e-7
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I++TK LMQ+ LSHGAPSPKLSK++EILVDHF
Sbjct: 433 MSKNEDIRKTKLLMQQRLSHGAPSPKLSKMLEILVDHF 470
[Close]
BLAST of Spo04185.1 vs. NCBI nr
Match: gi|565497910|ref|XP_006306594.1| (hypothetical protein CARUB_v10008097mg [Capsella rubella])

HSP 1 Score: 62.8 bits (151), Expect = 2.400e-7
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I++TK LMQ+ LSHGAPSPKLSK++EILVDHF
Sbjct: 421 MSKNEDIRKTKLLMQQMLSHGAPSPKLSKMLEILVDHF 458
[Close]
BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2N6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000050 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCN 42
           MSRNEAIQRTK LMQKSLSHGAPSPKLSK+IEILVDHF+ N
Sbjct: 437 MSRNEAIQRTKLLMQKSLSHGAPSPKLSKMIEILVDHFTAN 477
[Close]
BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D7D6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g001310 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHFSCN 42
           MSRNEAIQR K LMQKSLSHGAPSPKLSK+IE+LVDHF  N
Sbjct: 433 MSRNEAIQRAKVLMQKSLSHGAPSPKLSKMIEVLVDHFRRN 473
[Close]
BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Match: D7KLV5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473682 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.700e-7
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I++TK LMQ+ LSHGAPSPKLSK++EILVDHF
Sbjct: 433 MSKNEDIRKTKLLMQQRLSHGAPSPKLSKMLEILVDHF 470
[Close]
BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Match: R0GU95_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10008097mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.700e-7
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I++TK LMQ+ LSHGAPSPKLSK++EILVDHF
Sbjct: 421 MSKNEDIRKTKLLMQQMLSHGAPSPKLSKMLEILVDHF 458
[Close]
BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Match: A0A061FIW1_THECC (DEAD/DEAH box RNA helicase family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_036398 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.800e-7
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I   K LMQ+SLSHGAPSPKLSK++EILVDHF
Sbjct: 252 MSKNEDIMNAKLLMQRSLSHGAPSPKLSKMLEILVDHF 289
[Close]
BLAST of Spo04185.1 vs. TAIR (Arabidopsis)
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.900e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 

		  

Query: 1   MSRNEAIQRTKFLMQKSLSHGAPSPKLSKIIEILVDHF 39
           MS+NE I+ TK LMQ+ LSHGAPSPKLSK++EILVDHF
Sbjct: 423 MSKNEDIRMTKLLMQQRLSHGAPSPKLSKMLEILVDHF 460
The following BLAST results are available for this feature:
BLAST of Spo04185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902240583|gb|KNA26016.1|1.6e-1190.2hypothetical protein SOVF_0000... [more]
gi|731310894|ref|XP_010680843.1|4.0e-1085.3PREDICTED: Fanconi anemia grou... [more]
gi|731310896|ref|XP_010680886.1|4.0e-1085.3PREDICTED: Fanconi anemia grou... [more]
gi|297846616|ref|XP_002891189.1|2.4e-776.3hypothetical protein ARALYDRAF... [more]
gi|565497910|ref|XP_006306594.1|2.4e-776.3hypothetical protein CARUB_v10... [more]
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BLAST of Spo04185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S2N6_SPIOL1.1e-1190.2Uncharacterized protein OS=Spi... [more]
A0A0J8D7D6_BETVU2.8e-1085.3Uncharacterized protein OS=Bet... [more]
D7KLV5_ARALL1.7e-776.3Putative uncharacterized prote... [more]
R0GU95_9BRAS1.7e-776.3Uncharacterized protein OS=Cap... [more]
A0A061FIW1_THECC2.8e-776.3DEAD/DEAH box RNA helicase fam... [more]
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BLAST of Spo04185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G35530.21.9e-1076.3DEAD/DEAH box RNA helicase fam... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0045128 negative regulation of reciprocal meiotic recombination
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003677 DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
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Spo241480.68Barchart | Table