Spo04204 (gene)

Overview
NameSpo04204
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRing finger protein, putative
LocationSpoScf_00872 : 202893 .. 203432 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

mRNA sequence

ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

Coding sequence (CDS)

ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

Protein sequence

MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04204.1Spo04204.1mRNA


Homology
[Close]
BLAST of Spo04204.1 vs. NCBI nr
Match: gi|902207206|gb|KNA15652.1| (hypothetical protein SOVF_096250 [Spinacia oleracea])

HSP 1 Score: 372.9 bits (956), Expect = 3.200e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60
           MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY
Sbjct: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60

Query: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120
           ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME
Sbjct: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120

Query: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 180
           CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV
Sbjct: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 179
[Close]
BLAST of Spo04204.1 vs. NCBI nr
Match: gi|731314986|ref|XP_010689450.1| (PREDICTED: RING-H2 finger protein ATL66 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 309.3 bits (791), Expect = 4.400e-81
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1 

		  

Query: 3   HRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 62
           +R LL+HLS+LTTEEN+RLLHWHYSE+DDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR
Sbjct: 2   NRRLLNHLSKLTTEENTRLLHWHYSEFDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 61

Query: 63  WYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECC 122
           WYFRFRHAHHAHY H+ P+TSHA P  A   GLDP V+QSM IILHQ+SSVGREDEMECC
Sbjct: 62  WYFRFRHAHHAHYPHAQPHTSHAPPNMAACKGLDPIVMQSMEIILHQKSSVGREDEMECC 121

Query: 123 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD-PPADSVVL 178
           ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWL TQSSCPLCRLSLRVD P +DSVVL
Sbjct: 122 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLSTQSSCPLCRLSLRVDSPSSDSVVL 177
[Close]
BLAST of Spo04204.1 vs. NCBI nr
Match: gi|802546800|ref|XP_012087052.1| (PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas])

HSP 1 Score: 175.3 bits (443), Expect = 9.900e-41
Identity = 89/167 (53.29%), Postives = 116/167 (69.46%), Query Frame = 1 

		  

Query: 15  TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAH 74
           +  +S+  HWH++E +D++F+IHG+TLF++ ILF+I++L+TLL LYARW  R+++ H   
Sbjct: 2   SSNDSQQFHWHFTELNDNDFEIHGRTLFFIIILFAIVVLLTLLFLYARWVCRYQYHHFPT 61

Query: 75  YHHSH-PNTSHATPPTAVFNGLDPAVIQSMPIILHQQSS-----------VGREDEMECC 134
            H  H PN     PP +   GLDP +I+++PI LHQ SS            G E E ECC
Sbjct: 62  RHSLHAPN-----PPLSRPQGLDPTIIKALPITLHQSSSSSSSCDLNSSNTGCEVETECC 121

Query: 135 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
           ICLG+F+DGDKVKVLP C H FHS+CVDRWL  QSSCPLCR SLR D
Sbjct: 122 ICLGLFDDGDKVKVLPNCKHFFHSECVDRWLTAQSSCPLCRASLRND 163
[Close]
BLAST of Spo04204.1 vs. NCBI nr
Match: gi|747060481|ref|XP_011076672.1| (PREDICTED: RING-H2 finger protein ATL66 [Sesamum indicum])

HSP 1 Score: 171.0 bits (432), Expect = 1.900e-39
Identity = 89/156 (57.05%), Postives = 109/156 (69.87%), Query Frame = 1 

		  

Query: 16  EENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHY 75
           +E+S+   WHY+E+DD NFQI G+TLF++ +LFS+ILLV LL LYARW  RF        
Sbjct: 5   QESSQPFRWHYAEFDDSNFQIRGRTLFFIIVLFSVILLVALLFLYARWVCRFDPPPPPS- 64

Query: 76  HHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVK 135
             S    +HA  P     GLD A I S+PI+LH+ S+     E ECCICLG+F DGDKVK
Sbjct: 65  PTSTVQLAHA--PQRRTRGLDTATINSLPIVLHKSSTPVAGSEAECCICLGIFGDGDKVK 124

Query: 136 VLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPP 172
           +LP+C H FHS+CVD+WL TQSSCPLCR SLRVD P
Sbjct: 125 LLPQCRHCFHSECVDKWLTTQSSCPLCRASLRVDSP 157
[Close]
BLAST of Spo04204.1 vs. NCBI nr
Match: gi|698500514|ref|XP_009796011.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris])

HSP 1 Score: 168.7 bits (426), Expect = 9.300e-39
Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1 

		  

Query: 1   MTHRHLLSHLSQLT------TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLV 60
           M+  +L S  S L       + +NS   HWHY+E+DD++FQI G+TLF++ +LF+IIL+ 
Sbjct: 1   MSSNNLASDSSSLNAPQSAMSSQNSHSFHWHYAEFDDNDFQIRGRTLFFVVVLFAIILIA 60

Query: 61  TLLLLYARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSV- 120
           TLL LYARW  +FR    A    S    S   PP     GLDPA I ++PIILH+ S   
Sbjct: 61  TLLFLYARWVCKFRSPSSAEAARSSHAPSVPPPP----QGLDPAFIDNLPIILHRSSDCR 120

Query: 121 -GREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
                E+ECCICLG+F+DGDKVKVLP C H +HS+CVD+WL  QSSCPLCR S++ D
Sbjct: 121 GNTAAEVECCICLGIFQDGDKVKVLPSCQHCYHSECVDKWLRNQSSCPLCRASIQFD 173
[Close]
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA76_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096250 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.300e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60
           MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY
Sbjct: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60

Query: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120
           ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME
Sbjct: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120

Query: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 180
           CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV
Sbjct: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 179
[Close]
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023480 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.100e-81
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1 

		  

Query: 3   HRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 62
           +R LL+HLS+LTTEEN+RLLHWHYSE+DDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR
Sbjct: 2   NRRLLNHLSKLTTEENTRLLHWHYSEFDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 61

Query: 63  WYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECC 122
           WYFRFRHAHHAHY H+ P+TSHA P  A   GLDP V+QSM IILHQ+SSVGREDEMECC
Sbjct: 62  WYFRFRHAHHAHYPHAQPHTSHAPPNMAACKGLDPIVMQSMEIILHQKSSVGREDEMECC 121

Query: 123 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD-PPADSVVL 178
           ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWL TQSSCPLCRLSLRVD P +DSVVL
Sbjct: 122 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLSTQSSCPLCRLSLRVDSPSSDSVVL 177
[Close]
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A067LC17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01233 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.900e-41
Identity = 89/167 (53.29%), Postives = 116/167 (69.46%), Query Frame = 1 

		  

Query: 15  TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAH 74
           +  +S+  HWH++E +D++F+IHG+TLF++ ILF+I++L+TLL LYARW  R+++ H   
Sbjct: 2   SSNDSQQFHWHFTELNDNDFEIHGRTLFFIIILFAIVVLLTLLFLYARWVCRYQYHHFPT 61

Query: 75  YHHSH-PNTSHATPPTAVFNGLDPAVIQSMPIILHQQSS-----------VGREDEMECC 134
            H  H PN     PP +   GLDP +I+++PI LHQ SS            G E E ECC
Sbjct: 62  RHSLHAPN-----PPLSRPQGLDPTIIKALPITLHQSSSSSSSCDLNSSNTGCEVETECC 121

Query: 135 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
           ICLG+F+DGDKVKVLP C H FHS+CVDRWL  QSSCPLCR SLR D
Sbjct: 122 ICLGLFDDGDKVKVLPNCKHFFHSECVDRWLTAQSSCPLCRASLRND 163
[Close]
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A067FNF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.200e-38
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 1 

		  

Query: 17  ENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYH 76
           + S+  HWHY+E DDHNFQI G+TLF + ++F+++LLV+ L LYARW+ R        + 
Sbjct: 4   QESQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCR-------RFS 63

Query: 77  HSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGRED---EMECCICLGVFEDGDK 136
           H + N        A+  GLD   I ++PI+LH+     ++D   E ECCICLGVFEDGDK
Sbjct: 64  HQNSNPDVPRAQQALTRGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDK 123

Query: 137 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSV 176
           VK+LPKC H +H +CVD WL  +SSCPLCR SLRVD    S+
Sbjct: 124 VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158
[Close]
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: V4SMK0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032946mg PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.100e-38
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 1 

		  

Query: 17  ENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYH 76
           + S+  HWHY+E D+HNFQI G+TLF + ++F+++LL + LLLYARW+ R        + 
Sbjct: 4   QESQPFHWHYTELDEHNFQIRGRTLFSIIVVFAVVLLASFLLLYARWFCR-------RFS 63

Query: 77  HSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGRED---EMECCICLGVFEDGDK 136
           H + N        A+  GLD   I ++PIILH+     ++D   E ECCICLGVFEDGDK
Sbjct: 64  HQNSNPDVPREQQALTRGLDLTTINTLPIILHRSEKSTKDDKEEESECCICLGVFEDGDK 123

Query: 137 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSV 176
           VK+LPKC H +H +CVD WL  +SSCPLCR SLRVD    S+
Sbjct: 124 VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158
[Close]
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.600e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1 

		  

Query: 11  SQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHA 70
           S   + + S LL+WH ++YDD NFQIHG+TLF+   LFS++L   LL LY          
Sbjct: 3   SSSPSPQASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYI--------- 62

Query: 71  HHAHYHHSHPNTSHATPPTAVFN----GLDPAVIQSMPIILHQQSSVGREDEMECCICLG 130
            H +         HA+ P  +      GLDPA I+S+P++L ++     E+E ECCICLG
Sbjct: 63  -HRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLG 122

Query: 131 VFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
            FE+G+K+KVLP C H +H +CVDRWL T+SSCPLCR+S+RVD
Sbjct: 123 GFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155
[Close]
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.500e-17
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1 

		  

Query: 94  GLDPAVIQSMPIILHQQSSVGR---------EDEMECCICLGVFEDGDKVKVLPKCDHRF 153
           G+DP V++S+P+ ++ +S+            +D +EC +CL   EDG++ + LP+C H F
Sbjct: 98  GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGF 157

Query: 154 HSDCVDRWLCTQSSCPLCRLSLRVDPP 172
           H++CVD WL + S+CPLCRL++ V PP
Sbjct: 158 HAECVDMWLGSHSTCPLCRLTVVVPPP 184
[Close]
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 7.600e-17
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1 

		  

Query: 44  LFILFSIILLVTLLLLYARWYF-RFRHAHHAHYHHSHPNTS---HATPPTAVFN-----G 103
           + ILF +++L+  L LYARWY  R R  H      +   T     A P TA  +     G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 104 LDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLC 163
           LDP VI+S+P+      +   +D +EC +CL  FE+ +  +VLP C H FH DC+D W  
Sbjct: 95  LDPNVIKSLPVFTFSDET--HKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 154
[Close]
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-16
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1 

		  

Query: 90  AVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCV 149
           A   GL    ++ +P+ L+    +  +   EC ICLG FEDG+KV+VLPKC+H FH  C+
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 150 DRWLCTQSSCPLCRLSLRVDPPADSVV 177
           D WL ++SSCP CR SL ++ P+   V
Sbjct: 144 DTWLLSRSSCPTCRQSLLLEQPSPMAV 169
[Close]
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-15
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 

		  

Query: 93  NGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRW 152
           +GLD   I ++P+ L+   ++  E   +C +CL  F D DK+++LP C H FH  C+D W
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTW 238

Query: 153 LCTQSSCPLCRLSL 167
           L + S+CPLCR SL
Sbjct: 239 LLSNSTCPLCRRSL 252
[Close]
BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G11110.1 (RING/U-box superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.000e-36
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1 

		  

Query: 11  SQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHA 70
           S   + + S LL+WH ++YDD NFQIHG+TLF+   LFS++L   LL LY          
Sbjct: 3   SSSPSPQASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYI--------- 62

Query: 71  HHAHYHHSHPNTSHATPPTAVFN----GLDPAVIQSMPIILHQQSSVGREDEMECCICLG 130
            H +         HA+ P  +      GLDPA I+S+P++L ++     E+E ECCICLG
Sbjct: 63  -HRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLG 122

Query: 131 VFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
            FE+G+K+KVLP C H +H +CVDRWL T+SSCPLCR+S+RVD
Sbjct: 123 GFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155
[Close]
BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2)

HSP 1 Score: 88.6 bits (218), Expect = 4.300e-18
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1 

		  

Query: 44  LFILFSIILLVTLLLLYARWYF-RFRHAHHAHYHHSHPNTS---HATPPTAVFN-----G 103
           + ILF +++L+  L LYARWY  R R  H      +   T     A P TA  +     G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 104 LDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLC 163
           LDP VI+S+P+      +   +D +EC +CL  FE+ +  +VLP C H FH DC+D W  
Sbjct: 95  LDPNVIKSLPVFTFSDET--HKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 154
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BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 7.300e-18
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1 

		  

Query: 90  AVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCV 149
           A   GL    ++ +P+ L+    +  +   EC ICLG FEDG+KV+VLPKC+H FH  C+
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 150 DRWLCTQSSCPLCRLSLRVDPPADSVV 177
           D WL ++SSCP CR SL ++ P+   V
Sbjct: 144 DTWLLSRSSCPTCRQSLLLEQPSPMAV 169
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BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.200e-17
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1 

		  

Query: 93  NGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRW 152
           +GLD   I ++P+ L+   ++  E   +C +CL  F D DK+++LP C H FH  C+D W
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTW 238

Query: 153 LCTQSSCPLCRLSL 167
           L + S+CPLCR SL
Sbjct: 239 LLSNSTCPLCRRSL 252
[Close]
BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT2G47560.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-16
Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 1 

		  

Query: 16  EENSRLLHWHYSEYDDHNFQIHGQTLFY-LFILFSIILLVTLLLLYARWYFRFRHAHHAH 75
           EE+++ + W    +    + ++G+ +   + +LF  ++++     YARW FR  +     
Sbjct: 5   EESTKPI-WGSVSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRR 64

Query: 76  YHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGR-EDEMECCICLGVFEDGDK 135
              SH  T  A+P       LD AV+  +PI ++   +    E++ EC +CL  FE+ D+
Sbjct: 65  RIRSHLRTLSASPRD---QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDE 124

Query: 136 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPP 172
            ++LPKC H FH DC+D W  ++S+CPLCR    V PP
Sbjct: 125 GRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAP--VQPP 156
The following BLAST results are available for this feature:
BLAST of Spo04204.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902207206|gb|KNA15652.1|3.2e-100100.hypothetical protein SOVF_0962... [more]
gi|731314986|ref|XP_010689450.1|4.4e-8186.3PREDICTED: RING-H2 finger prot... [more]
gi|802546800|ref|XP_012087052.1|9.9e-4153.2PREDICTED: RING-H2 finger prot... [more]
gi|747060481|ref|XP_011076672.1|1.9e-3957.0PREDICTED: RING-H2 finger prot... [more]
gi|698500514|ref|XP_009796011.1|9.3e-3950.8PREDICTED: RING-H2 finger prot... [more]
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BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RA76_SPIOL2.3e-100100.Uncharacterized protein OS=Spi... [more]
A0A0J8D1I7_BETVU3.1e-8186.3Uncharacterized protein OS=Bet... [more]
A0A067LC17_JATCU6.9e-4153.2Uncharacterized protein OS=Jat... [more]
A0A067FNF6_CITSI3.2e-3850.0Uncharacterized protein OS=Cit... [more]
V4SMK0_9ROSI7.1e-3850.0Uncharacterized protein OS=Cit... [more]
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BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL66_ARATH3.6e-3547.2RING-H2 finger protein ATL66 O... [more]
EL5_ORYSJ1.5e-1741.3E3 ubiquitin-protein ligase EL... [more]
ATL2_ARATH7.6e-1739.5RING-H2 finger protein ATL2 OS... [more]
ATL72_ARATH1.3e-1644.8RING-H2 finger protein ATL72 O... [more]
ATL48_ARATH1.1e-1543.2RING-H2 finger protein ATL48 O... [more]
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BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G11110.12.0e-3647.2RING/U-box superfamily protein[more]
AT3G16720.14.3e-1839.5TOXICOS EN LEVADURA 2[more]
AT3G10910.17.3e-1844.8RING/U-box superfamily protein[more]
AT3G48030.16.2e-1743.2hypoxia-responsive family prot... [more]
AT2G47560.11.1e-1632.2RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 120..163
score: 3.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..162
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 121..163
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 116..165
score: 8.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 17..169
score: 5.0
NoneNo IPR availablePANTHERPTHR14155:SF100RING-H2 FINGER PROTEIN ATL66coord: 17..169
score: 5.0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 102..169
score: 6.83

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
biological_process GO:0006516 glycoprotein catabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0016556 mRNA modification
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0048046 apoplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005773 vacuole
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004560 alpha-L-fucosidase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
RNA-Seq Expression