Spo04204 (gene) | SpinachBase

Overview


Name	Spo04204
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ring finger protein, putative
Location	SpoScf_00872 : 202893 .. 203432 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

mRNA sequence

ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

Coding sequence (CDS)

ATGACACATCGCCACCTTCTAAGCCACCTCTCTCAGCTCACTACAGAGGAAAACTCTCGCTTATTGCACTGGCATTACTCTGAGTACGACGATCACAACTTCCAAATCCATGGACAAACACTCTTCTACCTCTTCATCCTTTTCTCCATCATCCTCCTTGTCACCCTCCTCTTACTCTACGCGCGGTGGTACTTCCGCTTCCGCCACGCTCACCACGCGCACTACCACCATTCCCATCCCAACACATCTCACGCGACACCTCCCACCGCCGTATTCAACGGCCTAGATCCGGCGGTGATCCAATCCATGCCGATAATCCTTCATCAACAATCCTCCGTCGGGAGGGAAGACGAGATGGAGTGTTGCATTTGTTTGGGTGTTTTCGAAGACGGCGACAAGGTTAAGGTGTTGCCTAAGTGCGACCACCGTTTCCACTCCGATTGTGTGGATCGTTGGCTATGTACTCAGTCGAGTTGCCCCCTTTGTAGACTCTCTCTCCGAGTCGACCCGCCGGCCGACTCGGTAGTATTAACAGTTTGA

Protein sequence

MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04204.1	Spo04204.1	mRNA

Homology

[Close]

BLAST of Spo04204.1 vs. NCBI nr
Match: gi|902207206|gb|KNA15652.1| (hypothetical protein SOVF_096250 [Spinacia oleracea])

HSP 1 Score: 372.9 bits (956), Expect = 3.200e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

		  
Query: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60
           MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY
Sbjct: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60

Query: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120
           ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME
Sbjct: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120

Query: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 180
           CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV
Sbjct: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 179

[Close]

BLAST of Spo04204.1 vs. NCBI nr
Match: gi|731314986|ref|XP_010689450.1| (PREDICTED: RING-H2 finger protein ATL66 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 309.3 bits (791), Expect = 4.400e-81
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1

		  
Query: 3   HRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 62
           +R LL+HLS+LTTEEN+RLLHWHYSE+DDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR
Sbjct: 2   NRRLLNHLSKLTTEENTRLLHWHYSEFDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 61

Query: 63  WYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECC 122
           WYFRFRHAHHAHY H+ P+TSHA P  A   GLDP V+QSM IILHQ+SSVGREDEMECC
Sbjct: 62  WYFRFRHAHHAHYPHAQPHTSHAPPNMAACKGLDPIVMQSMEIILHQKSSVGREDEMECC 121

Query: 123 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD-PPADSVVL 178
           ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWL TQSSCPLCRLSLRVD P +DSVVL
Sbjct: 122 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLSTQSSCPLCRLSLRVDSPSSDSVVL 177

[Close]

BLAST of Spo04204.1 vs. NCBI nr
Match: gi|802546800|ref|XP_012087052.1| (PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas])

HSP 1 Score: 175.3 bits (443), Expect = 9.900e-41
Identity = 89/167 (53.29%), Postives = 116/167 (69.46%), Query Frame = 1

		  
Query: 15  TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAH 74
           +  +S+  HWH++E +D++F+IHG+TLF++ ILF+I++L+TLL LYARW  R+++ H   
Sbjct: 2   SSNDSQQFHWHFTELNDNDFEIHGRTLFFIIILFAIVVLLTLLFLYARWVCRYQYHHFPT 61

Query: 75  YHHSH-PNTSHATPPTAVFNGLDPAVIQSMPIILHQQSS-----------VGREDEMECC 134
            H  H PN     PP +   GLDP +I+++PI LHQ SS            G E E ECC
Sbjct: 62  RHSLHAPN-----PPLSRPQGLDPTIIKALPITLHQSSSSSSSCDLNSSNTGCEVETECC 121

Query: 135 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
           ICLG+F+DGDKVKVLP C H FHS+CVDRWL  QSSCPLCR SLR D
Sbjct: 122 ICLGLFDDGDKVKVLPNCKHFFHSECVDRWLTAQSSCPLCRASLRND 163

[Close]

BLAST of Spo04204.1 vs. NCBI nr
Match: gi|747060481|ref|XP_011076672.1| (PREDICTED: RING-H2 finger protein ATL66 [Sesamum indicum])

HSP 1 Score: 171.0 bits (432), Expect = 1.900e-39
Identity = 89/156 (57.05%), Postives = 109/156 (69.87%), Query Frame = 1

		  
Query: 16  EENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHY 75
           +E+S+   WHY+E+DD NFQI G+TLF++ +LFS+ILLV LL LYARW  RF        
Sbjct: 5   QESSQPFRWHYAEFDDSNFQIRGRTLFFIIVLFSVILLVALLFLYARWVCRFDPPPPPS- 64

Query: 76  HHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVK 135
             S    +HA  P     GLD A I S+PI+LH+ S+     E ECCICLG+F DGDKVK
Sbjct: 65  PTSTVQLAHA--PQRRTRGLDTATINSLPIVLHKSSTPVAGSEAECCICLGIFGDGDKVK 124

Query: 136 VLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPP 172
           +LP+C H FHS+CVD+WL TQSSCPLCR SLRVD P
Sbjct: 125 LLPQCRHCFHSECVDKWLTTQSSCPLCRASLRVDSP 157

[Close]

BLAST of Spo04204.1 vs. NCBI nr
Match: gi|698500514|ref|XP_009796011.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris])

HSP 1 Score: 168.7 bits (426), Expect = 9.300e-39
Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1

		  
Query: 1   MTHRHLLSHLSQLT------TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLV 60
           M+  +L S  S L       + +NS   HWHY+E+DD++FQI G+TLF++ +LF+IIL+ 
Sbjct: 1   MSSNNLASDSSSLNAPQSAMSSQNSHSFHWHYAEFDDNDFQIRGRTLFFVVVLFAIILIA 60

Query: 61  TLLLLYARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSV- 120
           TLL LYARW  +FR    A    S    S   PP     GLDPA I ++PIILH+ S   
Sbjct: 61  TLLFLYARWVCKFRSPSSAEAARSSHAPSVPPPP----QGLDPAFIDNLPIILHRSSDCR 120

Query: 121 -GREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
                E+ECCICLG+F+DGDKVKVLP C H +HS+CVD+WL  QSSCPLCR S++ D
Sbjct: 121 GNTAAEVECCICLGIFQDGDKVKVLPSCQHCYHSECVDKWLRNQSSCPLCRASIQFD 173

[Close]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA76_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096250 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 2.300e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

		  
Query: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60
           MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY
Sbjct: 1   MTHRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLY 60

Query: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120
           ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME
Sbjct: 61  ARWYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEME 120

Query: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 180
           CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV
Sbjct: 121 CCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSVVLTV 179

[Close]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023480 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.100e-81
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1

		  
Query: 3   HRHLLSHLSQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 62
           +R LL+HLS+LTTEEN+RLLHWHYSE+DDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR
Sbjct: 2   NRRLLNHLSKLTTEENTRLLHWHYSEFDDHNFQIHGQTLFYLFILFSIILLVTLLLLYAR 61

Query: 63  WYFRFRHAHHAHYHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGREDEMECC 122
           WYFRFRHAHHAHY H+ P+TSHA P  A   GLDP V+QSM IILHQ+SSVGREDEMECC
Sbjct: 62  WYFRFRHAHHAHYPHAQPHTSHAPPNMAACKGLDPIVMQSMEIILHQKSSVGREDEMECC 121

Query: 123 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD-PPADSVVL 178
           ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWL TQSSCPLCRLSLRVD P +DSVVL
Sbjct: 122 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLSTQSSCPLCRLSLRVDSPSSDSVVL 177

[Close]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A067LC17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01233 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.900e-41
Identity = 89/167 (53.29%), Postives = 116/167 (69.46%), Query Frame = 1

		  
Query: 15  TEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAH 74
           +  +S+  HWH++E +D++F+IHG+TLF++ ILF+I++L+TLL LYARW  R+++ H   
Sbjct: 2   SSNDSQQFHWHFTELNDNDFEIHGRTLFFIIILFAIVVLLTLLFLYARWVCRYQYHHFPT 61

Query: 75  YHHSH-PNTSHATPPTAVFNGLDPAVIQSMPIILHQQSS-----------VGREDEMECC 134
            H  H PN     PP +   GLDP +I+++PI LHQ SS            G E E ECC
Sbjct: 62  RHSLHAPN-----PPLSRPQGLDPTIIKALPITLHQSSSSSSSCDLNSSNTGCEVETECC 121

Query: 135 ICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
           ICLG+F+DGDKVKVLP C H FHS+CVDRWL  QSSCPLCR SLR D
Sbjct: 122 ICLGLFDDGDKVKVLPNCKHFFHSECVDRWLTAQSSCPLCRASLRND 163

[Close]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: A0A067FNF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.200e-38
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 1

		  
Query: 17  ENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYH 76
           + S+  HWHY+E DDHNFQI G+TLF + ++F+++LLV+ L LYARW+ R        + 
Sbjct: 4   QESQPFHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCR-------RFS 63

Query: 77  HSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGRED---EMECCICLGVFEDGDK 136
           H + N        A+  GLD   I ++PI+LH+     ++D   E ECCICLGVFEDGDK
Sbjct: 64  HQNSNPDVPRAQQALTRGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDK 123

Query: 137 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSV 176
           VK+LPKC H +H +CVD WL  +SSCPLCR SLRVD    S+
Sbjct: 124 VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158

[Close]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Match: V4SMK0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032946mg PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.100e-38
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 1

		  
Query: 17  ENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHAHHAHYH 76
           + S+  HWHY+E D+HNFQI G+TLF + ++F+++LL + LLLYARW+ R        + 
Sbjct: 4   QESQPFHWHYTELDEHNFQIRGRTLFSIIVVFAVVLLASFLLLYARWFCR-------RFS 63

Query: 77  HSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGRED---EMECCICLGVFEDGDK 136
           H + N        A+  GLD   I ++PIILH+     ++D   E ECCICLGVFEDGDK
Sbjct: 64  HQNSNPDVPREQQALTRGLDLTTINTLPIILHRSEKSTKDDKEEESECCICLGVFEDGDK 123

Query: 137 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPPADSV 176
           VK+LPKC H +H +CVD WL  +SSCPLCR SLRVD    S+
Sbjct: 124 VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLRVDSALPSI 158

[Close]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.600e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1

		  
Query: 11  SQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHA 70
           S   + + S LL+WH ++YDD NFQIHG+TLF+   LFS++L   LL LY          
Sbjct: 3   SSSPSPQASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYI--------- 62

Query: 71  HHAHYHHSHPNTSHATPPTAVFN----GLDPAVIQSMPIILHQQSSVGREDEMECCICLG 130
            H +         HA+ P  +      GLDPA I+S+P++L ++     E+E ECCICLG
Sbjct: 63  -HRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLG 122

Query: 131 VFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
            FE+G+K+KVLP C H +H +CVDRWL T+SSCPLCR+S+RVD
Sbjct: 123 GFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.500e-17
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1

		  
Query: 94  GLDPAVIQSMPIILHQQSSVGR---------EDEMECCICLGVFEDGDKVKVLPKCDHRF 153
           G+DP V++S+P+ ++ +S+            +D +EC +CL   EDG++ + LP+C H F
Sbjct: 98  GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGF 157

Query: 154 HSDCVDRWLCTQSSCPLCRLSLRVDPP 172
           H++CVD WL + S+CPLCRL++ V PP
Sbjct: 158 HAECVDMWLGSHSTCPLCRLTVVVPPP 184

[Close]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 7.600e-17
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 44  LFILFSIILLVTLLLLYARWYF-RFRHAHHAHYHHSHPNTS---HATPPTAVFN-----G 103
           + ILF +++L+  L LYARWY  R R  H      +   T     A P TA  +     G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 104 LDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLC 163
           LDP VI+S+P+      +   +D +EC +CL  FE+ +  +VLP C H FH DC+D W  
Sbjct: 95  LDPNVIKSLPVFTFSDET--HKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 154

[Close]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-16
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1

		  
Query: 90  AVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCV 149
           A   GL    ++ +P+ L+    +  +   EC ICLG FEDG+KV+VLPKC+H FH  C+
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 150 DRWLCTQSSCPLCRLSLRVDPPADSVV 177
           D WL ++SSCP CR SL ++ P+   V
Sbjct: 144 DTWLLSRSSCPTCRQSLLLEQPSPMAV 169

[Close]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-15
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1

		  
Query: 93  NGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRW 152
           +GLD   I ++P+ L+   ++  E   +C +CL  F D DK+++LP C H FH  C+D W
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTW 238

Query: 153 LCTQSSCPLCRLSL 167
           L + S+CPLCR SL
Sbjct: 239 LLSNSTCPLCRRSL 252

[Close]

BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G11110.1 (RING/U-box superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.000e-36
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 1

		  
Query: 11  SQLTTEENSRLLHWHYSEYDDHNFQIHGQTLFYLFILFSIILLVTLLLLYARWYFRFRHA 70
           S   + + S LL+WH ++YDD NFQIHG+TLF+   LFS++L   LL LY          
Sbjct: 3   SSSPSPQASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYI--------- 62

Query: 71  HHAHYHHSHPNTSHATPPTAVFN----GLDPAVIQSMPIILHQQSSVGREDEMECCICLG 130
            H +         HA+ P  +      GLDPA I+S+P++L ++     E+E ECCICLG
Sbjct: 63  -HRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLG 122

Query: 131 VFEDGDKVKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVD 170
            FE+G+K+KVLP C H +H +CVDRWL T+SSCPLCR+S+RVD
Sbjct: 123 GFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVD 155

[Close]

BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2)

HSP 1 Score: 88.6 bits (218), Expect = 4.300e-18
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 1

		  
Query: 44  LFILFSIILLVTLLLLYARWYF-RFRHAHHAHYHHSHPNTS---HATPPTAVFN-----G 103
           + ILF +++L+  L LYARWY  R R  H      +   T     A P TA  +     G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 104 LDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRWLC 163
           LDP VI+S+P+      +   +D +EC +CL  FE+ +  +VLP C H FH DC+D W  
Sbjct: 95  LDPNVIKSLPVFTFSDET--HKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 154

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BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G10910.1 (RING/U-box superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 7.300e-18
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1

		  
Query: 90  AVFNGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCV 149
           A   GL    ++ +P+ L+    +  +   EC ICLG FEDG+KV+VLPKC+H FH  C+
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMK-ATECLICLGDFEDGEKVRVLPKCNHGFHVRCI 143

Query: 150 DRWLCTQSSCPLCRLSLRVDPPADSVV 177
           D WL ++SSCP CR SL ++ P+   V
Sbjct: 144 DTWLLSRSSCPTCRQSLLLEQPSPMAV 169

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BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.200e-17
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1

		  
Query: 93  NGLDPAVIQSMPIILHQQSSVGREDEMECCICLGVFEDGDKVKVLPKCDHRFHSDCVDRW 152
           +GLD   I ++P+ L+   ++  E   +C +CL  F D DK+++LP C H FH  C+D W
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTW 238

Query: 153 LCTQSSCPLCRLSL 167
           L + S+CPLCR SL
Sbjct: 239 LLSNSTCPLCRRSL 252

[Close]

BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Match: AT2G47560.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-16
Identity = 51/158 (32.28%), Postives = 85/158 (53.80%), Query Frame = 1

		  
Query: 16  EENSRLLHWHYSEYDDHNFQIHGQTLFY-LFILFSIILLVTLLLLYARWYFRFRHAHHAH 75
           EE+++ + W    +    + ++G+ +   + +LF  ++++     YARW FR  +     
Sbjct: 5   EESTKPI-WGSVSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRR 64

Query: 76  YHHSHPNTSHATPPTAVFNGLDPAVIQSMPIILHQQSSVGR-EDEMECCICLGVFEDGDK 135
              SH  T  A+P       LD AV+  +PI ++   +    E++ EC +CL  FE+ D+
Sbjct: 65  RIRSHLRTLSASPRD---QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDE 124

Query: 136 VKVLPKCDHRFHSDCVDRWLCTQSSCPLCRLSLRVDPP 172
            ++LPKC H FH DC+D W  ++S+CPLCR    V PP
Sbjct: 125 GRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAP--VQPP 156

The following BLAST results are available for this feature:

BLAST of Spo04204.1 vs. NCBI nr
BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
BLAST of Spo04204.1 vs. TAIR (Arabidopsis)

BLAST of Spo04204.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902207206\|gb\|KNA15652.1\|	3.2e-100	100.	hypothetical protein SOVF_0962...	[more]
gi\|731314986\|ref\|XP_010689450.1\|	4.4e-81	86.3	PREDICTED: RING-H2 finger prot...	[more]
gi\|802546800\|ref\|XP_012087052.1\|	9.9e-41	53.2	PREDICTED: RING-H2 finger prot...	[more]
gi\|747060481\|ref\|XP_011076672.1\|	1.9e-39	57.0	PREDICTED: RING-H2 finger prot...	[more]
gi\|698500514\|ref\|XP_009796011.1\|	9.3e-39	50.8	PREDICTED: RING-H2 finger prot...	[more]

BLAST of Spo04204.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RA76_SPIOL	2.3e-100	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D1I7_BETVU	3.1e-81	86.3	Uncharacterized protein OS=Bet...	[more]
A0A067LC17_JATCU	6.9e-41	53.2	Uncharacterized protein OS=Jat...	[more]
A0A067FNF6_CITSI	3.2e-38	50.0	Uncharacterized protein OS=Cit...	[more]
V4SMK0_9ROSI	7.1e-38	50.0	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo04204.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ATL66_ARATH	3.6e-35	47.2	RING-H2 finger protein ATL66 O...	[more]
EL5_ORYSJ	1.5e-17	41.3	E3 ubiquitin-protein ligase EL...	[more]
ATL2_ARATH	7.6e-17	39.5	RING-H2 finger protein ATL2 OS...	[more]
ATL72_ARATH	1.3e-16	44.8	RING-H2 finger protein ATL72 O...	[more]
ATL48_ARATH	1.1e-15	43.2	RING-H2 finger protein ATL48 O...	[more]

BLAST of Spo04204.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G11110.1	2.0e-36	47.2	RING/U-box superfamily protein	[more]
AT3G16720.1	4.3e-18	39.5	TOXICOS EN LEVADURA 2	[more]
AT3G10910.1	7.3e-18	44.8	RING/U-box superfamily protein	[more]
AT3G48030.1	6.2e-17	43.2	hypoxia-responsive family prot...	[more]
AT2G47560.1	1.1e-16	32.2	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 score: 3.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 121..163 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 116..165 score: 8.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 17..169 score: 5.0
None	No IPR available	PANTHER	PTHR14155:SF100	RING-H2 FINGER PROTEIN ATL66	coord: 17..169 score: 5.0
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 102..169 score: 6.83

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0006516	glycoprotein catabolic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006421	asparaginyl-tRNA aminoacylation
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005773	vacuole
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004816	asparagine-tRNA ligase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004560	alpha-L-fucosidase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03626	0.76	Barchart \| Table
Spo17903	0.76	Barchart \| Table
Spo01535	0.74	Barchart \| Table
Spo10565	0.72	Barchart \| Table
Spo10553	0.71	Barchart \| Table
Spo23774	0.70	Barchart \| Table
Spo16820	0.70	Barchart \| Table
Spo22452	0.70	Barchart \| Table
Spo15641	0.69	Barchart \| Table
Spo25206	0.69	Barchart \| Table
Spo20647	0.69	Barchart \| Table
Spo03527	0.69	Barchart \| Table
Spo02928	0.68	Barchart \| Table
Spo18574	0.68	Barchart \| Table
Spo26185	0.67	Barchart \| Table
Spo01513	0.67	Barchart \| Table
Spo05064	0.67	Barchart \| Table
Spo05090	0.67	Barchart \| Table
Spo09146	0.67	Barchart \| Table
Spo11333	0.67	Barchart \| Table
Spo13296	0.67	Barchart \| Table
Spo18444	0.67	Barchart \| Table
Spo20284	0.67	Barchart \| Table
Spo24874	0.67	Barchart \| Table
Spo00968	0.67	Barchart \| Table
Spo14404	0.66	Barchart \| Table
Spo07537	0.66	Barchart \| Table
Spo07017	0.66	Barchart \| Table
Spo24573	0.66	Barchart \| Table
Spo04497	0.66	Barchart \| Table
Spo13139	0.66	Barchart \| Table
Spo14380	0.66	Barchart \| Table
Spo09139	0.66	Barchart \| Table
Spo20512	0.66	Barchart \| Table
Spo05114	0.66	Barchart \| Table
Spo04527	0.66	Barchart \| Table
Spo23396	0.66	Barchart \| Table
Spo10147	0.66	Barchart \| Table
Spo05935	0.65	Barchart \| Table
Spo02936	0.65	Barchart \| Table
Spo24416	0.65	Barchart \| Table
Spo22556	0.65	Barchart \| Table