Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTCGAGATTACAATCCGGAACAGAATGAAGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATTATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACCTTGGGTCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCAGAAAAACAAATTTTGATCGAACCCATATTTGCTCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTTGATGTACTTTTATCCTCAACAAGTGGACCGGCATTCAATGCGGGTCGAAGTATATGGTTGCCTGGCTGGTTAAATGCTGTTAATGAGAATAGTAATTCCCTATTCTTAACAATAGGGCCTGGAGACTTTTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCAAAGTTAATGCCAGATAAAAAGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCAGGACGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCGGTTTTCTGGATGTTAAATACCATTGGGTGGGTTACCTTTTATTGGCATTGGAAACACATCACATTATGGCAGGGTAATGTTTCACAATTTAATGAATCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATCCATTTGGTATGAATAGTTTATCGGTTTGGGCCTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACGGGATTTATGTTCTTAATTTCGTGGCGTGGATATTGGCAGGAGTTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCCAATTTGATTCGATGGAGAGATAAACCGGTAGCTCTTTCCATTGTACAAGCAAGATTAGTTGGATTAGCCCACTTCTCCGTAGGTTATATATTCACATATGCGGCTTTCTTGATTGCCTCTACATCGGGCAAATTCGGTTAA ATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTCGAGATTACAATCCGGAACAGAATGAAGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATTATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACCTTGGGTCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCAGAAAAACAAATTTTGATCGAACCCATATTTGCTCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTTGATGTACTTTTATCCTCAACAAGTGGACCGGCATTCAATGCGGGTCGAAGTATATGGTTGCCTGGCTGGTTAAATGCTGTTAATGAGAATAGTAATTCCCTATTCTTAACAATAGGGCCTGGAGACTTTTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCAAAGTTAATGCCAGATAAAAAGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCAGGACGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCGGAGTTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCCAATTTGATTCGATGGAGAGATAAACCGGTAGCTCTTTCCATTGTACAAGCAAGATTAGTTGGATTAGCCCACTTCTCCGTAGGTTATATATTCACATATGCGGCTTTCTTGATTGCCTCTACATCGGGCAAATTCGGTTAA ATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTCGAGATTACAATCCGGAACAGAATGAAGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATTATATCCCATTTAAGTTGGGCCAGTCTCTTTTTAGGGTTCCATACCTTGGGTCTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCAGAAAAACAAATTTTGATCGAACCCATATTTGCTCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTTGATGTACTTTTATCCTCAACAAGTGGACCGGCATTCAATGCGGGTCGAAGTATATGGTTGCCTGGCTGGTTAAATGCTGTTAATGAGAATAGTAATTCCCTATTCTTAACAATAGGGCCTGGAGACTTTTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCAAAGTTAATGCCAGATAAAAAGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCAGGACGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCGGAGTTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCCAATTTGATTCGATGGAGAGATAAACCGGTAGCTCTTTCCATTGTACAAGCAAGATTAGTTGGATTAGCCCACTTCTCCGTAGGTTATATATTCACATATGCGGCTTTCTTGATTGCCTCTACATCGGGCAAATTCGGTTAA MTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTSGPAFNAGRSIWLPGWLNAVNENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04277.1 vs. NCBI nr
Match: gi|674903578|emb|CDY29456.1| (BnaC05g32140D [Brassica napus]) HSP 1 Score: 496.5 bits (1277), Expect = 2.800e-137 Identity = 236/239 (98.74%), Postives = 239/239 (100.00%), Query Frame = 1
BLAST of Spo04277.1 vs. NCBI nr
Match: gi|674893347|emb|CDY39485.1| (BnaC03g60950D [Brassica napus]) HSP 1 Score: 496.5 bits (1277), Expect = 2.800e-137 Identity = 236/239 (98.74%), Postives = 239/239 (100.00%), Query Frame = 1
BLAST of Spo04277.1 vs. NCBI nr
Match: gi|657302695|ref|YP_009040317.1| (photosystem I P700 apoprotein A2 [Hyoscyamus niger]) HSP 1 Score: 418.7 bits (1075), Expect = 7.400e-114 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. NCBI nr
Match: gi|435856372|ref|YP_007317247.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Camellia sinensis]) HSP 1 Score: 418.7 bits (1075), Expect = 7.400e-114 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. NCBI nr
Match: gi|478733644|gb|AGJ51255.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Solanum carolinense]) HSP 1 Score: 418.7 bits (1075), Expect = 7.400e-114 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Match: A0A078HM06_BRANA (BnaC03g60950D protein OS=Brassica napus GN=BnaC03g60950D PE=3 SV=1) HSP 1 Score: 496.5 bits (1277), Expect = 2.000e-137 Identity = 236/239 (98.74%), Postives = 239/239 (100.00%), Query Frame = 1
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Match: A0A078EFV5_BRANA (BnaC04g15560D protein OS=Brassica napus GN=BnaC09g27530D PE=3 SV=1) HSP 1 Score: 496.5 bits (1277), Expect = 2.000e-137 Identity = 236/239 (98.74%), Postives = 239/239 (100.00%), Query Frame = 1
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Match: A0A0D3EEW2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 9.400e-132 Identity = 226/232 (97.41%), Postives = 231/232 (99.57%), Query Frame = 1
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Match: A0A0C5AX56_9SOLA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Dunalia obovata GN=psaB PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 5.200e-114 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Match: U3QZN3_IPOBA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Ipomoea batatas GN=psaB PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 5.200e-114 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Match: PSAB_COFAR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Coffea arabica GN=psaB PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 4.600e-116 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Match: PSAB_CUCSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus GN=psaB PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 4.600e-116 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Match: PSAB_SPIOL (Photosystem I P700 chlorophyll a apoprotein A2 OS=Spinacia oleracea GN=psaB PE=3 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 4.600e-116 Identity = 199/207 (96.14%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Match: PSAB_BARVE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Barbarea verna GN=psaB PE=3 SV=1) HSP 1 Score: 418.3 bits (1074), Expect = 6.100e-116 Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Match: PSAB_LEPVR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lepidium virginicum GN=psaB PE=3 SV=1) HSP 1 Score: 418.3 bits (1074), Expect = 6.100e-116 Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 418.3 bits (1074), Expect = 3.400e-117 Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 1
BLAST of Spo04277.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 198.4 bits (503), Expect = 5.600e-51 Identity = 97/202 (48.02%), Postives = 127/202 (62.87%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04277.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04277.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04277.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04277.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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