Spo04278 (gene)

Overview
NameSpo04278
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) (Precursor)
LocationSpoScf_02385 : 65243 .. 66103 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACCTGGGATCCCGGAGGTGGAGATGTAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTGTTTACTAAAATCGCCTTTTGGAGGAGAAGGGTGGATTGTTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTAGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACTACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCTTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAACAGGATTTGACAAAGGTATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

mRNA sequence

ATGATACCTGGGATCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAACAGGATTTGACAAAGGTATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Coding sequence (CDS)

ATGATACCTGGGATCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAACAGGATTTGACAAAGGTATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Protein sequence

MIPGIPEVEILAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGHLWHAGRARAAATGFDKGIDRDFEPVLSMTPLN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04278.1Spo04278.1mRNA


Homology
[Close]
BLAST of Spo04278.1 vs. NCBI nr
Match: gi|152211460|gb|ABS30959.1| (PsbC, partial (chloroplast) [Deschampsia cespitosa var. alpina])

HSP 1 Score: 133.7 bits (335), Expect = 2.000e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 232 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 291

Query: 71  GLG 74
           GLG
Sbjct: 292 GLG 294
[Close]
BLAST of Spo04278.1 vs. NCBI nr
Match: gi|511265853|gb|AGN71960.1| (photosystem II CP43 chlorophyll apoprotein [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 133.7 bits (335), Expect = 2.000e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. NCBI nr
Match: gi|14017558|ref|NP_114245.1| (photosystem II 44 kDa protein (chloroplast) [Triticum aestivum])

HSP 1 Score: 133.7 bits (335), Expect = 2.000e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. NCBI nr
Match: gi|884997418|ref|YP_009155208.1| (photosystem II 44 kDa protein (plastid) [Pastinaca pimpinellifolia])

HSP 1 Score: 133.7 bits (335), Expect = 2.000e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. NCBI nr
Match: gi|671743866|ref|YP_009051558.1| (photosystem II CP43-chlorophyll (chloroplast) [Salix interior])

HSP 1 Score: 133.7 bits (335), Expect = 2.000e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Match: A0AS31_AGAAF (Photosystem II CP43 reaction center protein (Fragment) OS=Agapanthus africanus GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Match: U5TU12_SETIT (Photosystem II CP43 reaction center protein OS=Setaria italica GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Match: S4Z0U7_HORVS (Photosystem II CP43 reaction center protein OS=Hordeum vulgare subsp. spontaneum GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Match: A0A0U2TY33_OENGL (Photosystem II CP43 reaction center protein OS=Oenothera glazioviana GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Match: H2FAL6_LEDCO (Photosystem II CP43 reaction center protein OS=Ledebouria cordifolia GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.400e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Match: PSBC_OENPA (Photosystem II CP43 reaction center protein OS=Oenothera parviflora GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Match: PSBC_WHEAT (Photosystem II CP43 reaction center protein OS=Triticum aestivum GN=psbC PE=3 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Match: PSBC_LEMMI (Photosystem II CP43 reaction center protein OS=Lemna minor GN=psbC PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
[Close]
BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Match: PSBC_LOTJA (Photosystem II CP43 reaction center protein OS=Lotus japonicus GN=psbC PE=3 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 264 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 323

Query: 71  GLG 74
           GLG
Sbjct: 324 GLG 326
[Close]
BLAST of Spo04278.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 130.6 bits (327), Expect = 5.800e-31
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLG 74
           GLG
Sbjct: 336 GLG 338
The following BLAST results are available for this feature:
BLAST of Spo04278.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|152211460|gb|ABS30959.1|2.0e-28100.PsbC, partial (chloroplast) [D... [more]
gi|511265853|gb|AGN71960.1|2.0e-28100.photosystem II CP43 chlorophyl... [more]
gi|14017558|ref|NP_114245.1|2.0e-28100.photosystem II 44 kDa protein ... [more]
gi|884997418|ref|YP_009155208.1|2.0e-28100.photosystem II 44 kDa protein ... [more]
gi|671743866|ref|YP_009051558.1|2.0e-28100.photosystem II CP43-chlorophyl... [more]
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BLAST of Spo04278.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0AS31_AGAAF1.4e-28100.Photosystem II CP43 reaction c... [more]
U5TU12_SETIT1.4e-28100.Photosystem II CP43 reaction c... [more]
S4Z0U7_HORVS1.4e-28100.Photosystem II CP43 reaction c... [more]
A0A0U2TY33_OENGL1.4e-28100.Photosystem II CP43 reaction c... [more]
H2FAL6_LEDCO1.4e-28100.Photosystem II CP43 reaction c... [more]
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BLAST of Spo04278.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBC_OENPA1.2e-30100.Photosystem II CP43 reaction c... [more]
PSBC_WHEAT1.2e-30100.Photosystem II CP43 reaction c... [more]
PSBC_LEMMI1.2e-30100.Photosystem II CP43 reaction c... [more]
PSBC_SPIOL1.2e-30100.Photosystem II CP43 reaction c... [more]
PSBC_LOTJA1.2e-30100.Photosystem II CP43 reaction c... [more]
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BLAST of Spo04278.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00280.15.8e-3198.4photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 72..102
score: 1.8E-6coord: 11..72
score: 7.6
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 11..105
score: 3.14
NoneNo IPR availableGENE3D1.10.10.670coord: 39..74
score: 2.9
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 11..73
score: 3.0
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 11..73
score: 3.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0015979 photosynthesis
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009523 photosystem II
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0009522 photosystem I
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression