Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGCCTATATGTACCAATTAAACTGCGACACGTAAGATTGCGACAACTAAATGTTGTCGCAACTTGCGACCTTTATCATCGCCCTTAAGCTAAAATAACAGTCAGGAAATCAAATCAATCAGTTGAAACATGTGGCCTAGATATATGCACATAAGCCCTACCACAAGATCTAACATGTAAAAGTACTCAATTTTTTATATAAAAGACTCAACCTTTCAAAGAAAATGTGACAAGGTCCACTTGAATTTTAATCATTTTATCTTCATAAAATTGATCATAAAATTGCTGATTAACCCCTTTTCATGATCGTGACCACCTCTATAATATGCTGATAATACTATACTGTTTGACTTTCGATCGTCTGAGAAATCTTTGTTGCAGGTAAGATTCACTTACTTTTATAGTTTTATGCATTTCTTTTGATTTTGTTGCTTTATAAAAAATGAATCTTTCAGTCTGGTTTTCAAGTTTGAGCTAGCTAGAAAGTAGAAACTCTGTTATATTGGCTAGTTTGATCAGTTTTCTTCTGATAATTATGAATTATGCAGTATTCGACTTCAGAAACAGTTTTACTCTTCATGTTTACGAGATTGATCAATCTTGAATCTTTCAATTTGGATTTCCAATTTGTTGTAGATAGAAACTCTGTATGTTGGTTAGTTTGATCAGTTTTCTTCTGATAGTGCAGTATTTGACAATATGGGTATTGACTATTGAGGGATATATACTGTAATTCGACTTCAGAAACAGTTTTACAGTTCGTGTGTGTGAGATTGATCAATCTCGGATATTAAGAGACTCATTGTTGCATCTCACAACTCACAACATTGTCTTTGATCTGTGGAATTTGTTCCAATGTGTGTTCTCTTTGTTTTTCTGCTACCAGGCCAACTGTGAACTTAAACTAAGAAGTTATTTTCTGGATTTTGGCTGGTTTTGATCAATTTTCTTCTGATAGTTTTGAATAGTGCAATATTTGGCAAAATGGGTAATAATTATTCAAGGTTATATACTGTAATTCAACTTCAGACACGGTTCGACTGTTTTCTGGATTTTGGCTGGTTTTGATCAATTTTCTTCTGATAATTTTGAGTGATGCAGTATTTGGCAATATGGGTATTGACTATTCAGGGTTTATATACTGTAATCCGACTTCAGAAACAATTTTATTGTTCATGTGTGCAAGATTGATCAATCTCGGATATCAAGAGACTCATTAATCCTTGTTGCATCTCATATTCTCATCACATTATCTGGAATTTGTTCCAATATGTCTGCCTTTTGTTTTTATGTTTCCAGGCTAACTGTGAACTTAACTAAGAAATTATTTTCTGGATTTTGTCTGGTTTGATCAATTTTCTTCTGATAATTTTGAATATTGCAATAATTGGCAAAGAGGGTATTAACTATTCAGGGTTATATACTGTAATTCAACTTCAAAAAACAGTTTTATTGTTCATGTATGCAAGATTGATCAATCTCAGATATTAAGAGACACATCATTACATGAAAATTGTCTTTTGTTTTTCTTCTTTCAGGGTAACTGTAAACTCAACTAAGAAACCATGATCATCAAACTCTGAACATTCAAAGATCAGCAAAAAACTACCAGAAATGGCTTTAGCACCTACCCCAAAGGTAATTTTAGGTTCAATAGCCTTTGCAGTATTCTGGGTAATGGCAGTTTTCCCAGCAGTCCCATTTCTACCCATTGGAAGAACAGCAGGAACACTCCTAGGAGCCATTCTAATGGTAATATTCCGCGTCATAACCCCAGATCAAGCATACGACTCAATCGATCTTCCAATCCTCGGTCTACTTTTCGGTACAATGGTAGTAAGTGTTTACCTAGAAAGAGCTGATATGTTCAAATACATTGGTAAATTACTAGCATGGAAAAGTTTAGGACCAAAAGACTTGATTTTCAGAATCTGCATCATTTCTGCAATTTCTAGTGCTTTCTTTACAAATGATACTGCTTGTGTAGTTTTGACTGAGTTTGTGTTGAAGATTGCTAGACAACATAATCTTCCCCCTCACCCATTTTTACTCGCGCTTGCTTCTAGTGCGAATATTGGGTCTTCAGCAACACCTATTGGGAATCCGCAGAATTTGGTTATTGCTGTTCAGAGTAAGATCTCATTCGGGTTGTTCTTGGTAGGGATTCTTCCGGCTATGCTTGTGGGTGTTTTGGTCAATTCCTTGATGATTATAGGCATGTATTGGAAGTTGTTGTCAGTTCATAAGGATGAGGAAGACGCGGCCTCAGAAGTGGTTGCTGATGAATACAGTTCTCATCGGTTTTCACCTGCAACAATGTCATCATCACATCTGTCTCCTTCCAATTCTTCGGGGTTAGATACACATAGGTAAATAAATAGACTTTCAAGATATACATTTAACTTCAATTTTTATTTATTTACGCTCATGTTTTATTTTGTTAACTTCAAATTATATTTTGTTAACCTTATATTTTATTCATTTAAAATTCACTTTTTTTTGTTTCTTTTTTTTACTTCCACCTTCTTCTTTGTTTTCCTACCGATTTATTTTAGAGCTGATCAACACGGTCCGGCCCGAAAATTATCGGGTTTTGGGCAGAATATTTCTGCCGGATGTACGGGGCCGACCCGACCCGATTTTTTAAAAAATTTTGTGGATTTTTGGCAACGTAAAACATCACCTTTAGTTGTAAATTTGACCCGCCCCTAAAGCCAGCTATTTTGGCCCGAAATAACGGGTTTTTGGGCACACAAAATTGGCCCGAAACTTGGCCCCGGCCGGCATAATGGACAGATTTTAATGGCCACGGCCCGAACCCGACCCGGGACCCGCCTTTTGAACAGTACTAATTTATTTACGAAAATACCATATTATTTACACTATTCACAAATAATGATTATTGATTATTGATTTCCGCTCTCCTAGTGAGAATCTGAGAAACAGGGTTGAATCCTCTGATAACGAGTTCCACAGTTTCGAGTCTTCGAGAATGTCAGAAACATTTCAAACTGCAGGGACGACAACTCCTGAAACAGTAGCAGTAAAAGGAGAGTTCATTACACAACTGAAGCTGTTCTTGTCTGGGAAAGTTGTTAGTGAAAAATGGAAGCACATACTTTGGAAGATCTGTGTCTATCTTGTTACTGCAGGCATGCTGATTGCTCTGCTGTGTGGGTTAAACATGTCGTGGACTGCGATCACTGCTGCGCTCGCTCTTGTTGTTCTCGATTTCAAGGATGCTCGGCCCTCATTAGAGAAGGTAACAGTTTCTGAGTTCATGGTTTCCCGGATACTTAGCTTCTGGCAAAAATGGTTGTGGGCCGGGTTGGGCTTTGGGCCTAATCGGGTCCGGGCCCACACCAAGCCCACTCTGCATAGTGTCGGGCCGAGAATTTTCATAACAGGGAGCACGAGCACGGGGTGTCGTGCTTAAACTTAAATTTACTAAATTTAACGTGCTTTGCCGTGCTGGGTCGAGTCGTGTCGTGTCTTGTCGGCTTGTCGTGCAGGTGCTTTCTCCAAAAAATGCGGCCCAGTCACGGTCCACGATTGTGTGCTCGTGTCGGGCCGAAAAGTTCAAAACAGGGCCCATGTCCACGGGCTATTGTGCGTGAGCCTAAATTTACTAAATTTAGTATGTTTTGTCGTGTCGGGTCGATTCGTGCCGTGCCTTGTCCGCTTGTCGTGCTTTTTCTAAAAAAAATGCGGCTCGACCACGGCTCACGATTTTGTGCTCATGTCGGGCCGTGCTTTTTTCGTGTCGTGCCTTGTCAGCTTGTCATGCTTTTTCCAAAAAATTGCGGCCCGGCCACGGCTCACGATTTTGTGCTCGTGCCGGGCTGGGTTTTTCTTGTCGGGCCGGATTGGGCCTCGGGCTGGGCCGACCCACAACCATCTTTAGTTTATGGGGTTGAATTTTAACTGATATTGGTAGGTTCTATCTTAAAAAATGTCCTGATGTGTTTCAGAATTTCTGAATCAGGTCTCATATTCACTTCTGATATTCTTCTGTGGGATGTTCATCACGGTTGATGGGTTCAATAAGACCGGGATCCCGGGCAAAGTGTGGGAGATTATGGAGCCGCATTCGCAGGTTGATCGTGTTGGTGGAATTGCTGTTCTTGCAGTGGTTATTCTTATTCTTTCAAACTTGGTATCAAATGTTCCAACTGGTAATGTTTCTCCTTCATTTCCATACTTGCTTCATATACTTCATCTTCCATCCATATTACAGGTTGATCATGTTAGGGATTTACCGTTTTAG CGCCTATATGTACCAATTAAACTGCGACACGTAAGATTGCGACAACTAAATGTTGTCGCAACTTGCGACCTTTATCATCGCCCTTAAGCTAAAATAACAGTCAGGAAATCAAATCAATCAGTTGAAACATGTGGCCTAGATATATGCACATAAGCCCTACCACAAGATCTAACATGTAAAAGTACTCAATTTTTTATATAAAAGACTCAACCTTTCAAAGAAAATGTGACAAGGTCCACTTGAATTTTAATCATTTTATCTTCATAAAATTGATCATAAAATTGCTGATTAACCCCTTTTCATGATCGTGACCACCTCTATAATATGCTGATAATACTATACTGTTTGACTTTCGATCGTCTGAGAAATCTTTGTTGCAGGGTAACTGTAAACTCAACTAAGAAACCATGATCATCAAACTCTGAACATTCAAAGATCAGCAAAAAACTACCAGAAATGGCTTTAGCACCTACCCCAAAGGTAATTTTAGGTTCAATAGCCTTTGCAGTATTCTGGGTAATGGCAGTTTTCCCAGCAGTCCCATTTCTACCCATTGGAAGAACAGCAGGAACACTCCTAGGAGCCATTCTAATGGTAATATTCCGCGTCATAACCCCAGATCAAGCATACGACTCAATCGATCTTCCAATCCTCGGTCTACTTTTCGGTACAATGGTAGTAAGTGTTTACCTAGAAAGAGCTGATATGTTCAAATACATTGGTAAATTACTAGCATGGAAAAGTTTAGGACCAAAAGACTTGATTTTCAGAATCTGCATCATTTCTGCAATTTCTAGTGCTTTCTTTACAAATGATACTGCTTGTGTAGTTTTGACTGAGTTTGTGTTGAAGATTGCTAGACAACATAATCTTCCCCCTCACCCATTTTTACTCGCGCTTGCTTCTAGTGCGAATATTGGGTCTTCAGCAACACCTATTGGGAATCCGCAGAATTTGGTTATTGCTGTTCAGAGTAAGATCTCATTCGGGTTGTTCTTGGTAGGGATTCTTCCGGCTATGCTTGTGGGTGTTTTGGTCAATTCCTTGATGATTATAGGCATGTATTGGAAGTTGTTGTCAGTTCATAAGGATGAGGAAGACGCGGCCTCAGAAGTGGTTGCTGATGAATACAGTTCTCATCGGTTTTCACCTGCAACAATGTCATCATCACATCTGTCTCCTTCCAATTCTTCGGGGTTAGATACACATAGTGAGAATCTGAGAAACAGGGTTGAATCCTCTGATAACGAGTTCCACAGTTTCGAGTCTTCGAGAATGTCAGAAACATTTCAAACTGCAGGGACGACAACTCCTGAAACAGTAGCAGTAAAAGGAGAGTTCATTACACAACTGAAGCTGTTCTTGTCTGGGAAAGTTGTTAGTGAAAAATGGAAGCACATACTTTGGAAGATCTGTGTCTATCTTGTTACTGCAGGCATGCTGATTGCTCTGCTGTGTGGGTTAAACATGTCGTGGACTGCGATCACTGCTGCGCTCGCTCTTGTTGTTCTCGATTTCAAGGATGCTCGGCCCTCATTAGAGAAGGTCTCATATTCACTTCTGATATTCTTCTGTGGGATGTTCATCACGGTTGATGGGTTCAATAAGACCGGGATCCCGGGCAAAGTGTGGGAGATTATGGAGCCGCATTCGCAGGTTGATCGTGTTGGTGGAATTGCTGTTCTTGCAGTGGTTATTCTTATTCTTTCAAACTTGGTATCAAATGTTCCAACTGGTAATGTTTCTCCTTCATTTCCATACTTGCTTCATATACTTCATCTTCCATCCATATTACAGGTTGATCATGTTAGGGATTTACCGTTTTAG ATGGCTTTAGCACCTACCCCAAAGGTAATTTTAGGTTCAATAGCCTTTGCAGTATTCTGGGTAATGGCAGTTTTCCCAGCAGTCCCATTTCTACCCATTGGAAGAACAGCAGGAACACTCCTAGGAGCCATTCTAATGGTAATATTCCGCGTCATAACCCCAGATCAAGCATACGACTCAATCGATCTTCCAATCCTCGGTCTACTTTTCGGTACAATGGTAGTAAGTGTTTACCTAGAAAGAGCTGATATGTTCAAATACATTGGTAAATTACTAGCATGGAAAAGTTTAGGACCAAAAGACTTGATTTTCAGAATCTGCATCATTTCTGCAATTTCTAGTGCTTTCTTTACAAATGATACTGCTTGTGTAGTTTTGACTGAGTTTGTGTTGAAGATTGCTAGACAACATAATCTTCCCCCTCACCCATTTTTACTCGCGCTTGCTTCTAGTGCGAATATTGGGTCTTCAGCAACACCTATTGGGAATCCGCAGAATTTGGTTATTGCTGTTCAGAGTAAGATCTCATTCGGGTTGTTCTTGGTAGGGATTCTTCCGGCTATGCTTGTGGGTGTTTTGGTCAATTCCTTGATGATTATAGGCATGTATTGGAAGTTGTTGTCAGTTCATAAGGATGAGGAAGACGCGGCCTCAGAAGTGGTTGCTGATGAATACAGTTCTCATCGGTTTTCACCTGCAACAATGTCATCATCACATCTGTCTCCTTCCAATTCTTCGGGGTTAGATACACATAGTGAGAATCTGAGAAACAGGGTTGAATCCTCTGATAACGAGTTCCACAGTTTCGAGTCTTCGAGAATGTCAGAAACATTTCAAACTGCAGGGACGACAACTCCTGAAACAGTAGCAGTAAAAGGAGAGTTCATTACACAACTGAAGCTGTTCTTGTCTGGGAAAGTTGTTAGTGAAAAATGGAAGCACATACTTTGGAAGATCTGTGTCTATCTTGTTACTGCAGGCATGCTGATTGCTCTGCTGTGTGGGTTAAACATGTCGTGGACTGCGATCACTGCTGCGCTCGCTCTTGTTGTTCTCGATTTCAAGGATGCTCGGCCCTCATTAGAGAAGGTCTCATATTCACTTCTGATATTCTTCTGTGGGATGTTCATCACGGTTGATGGGTTCAATAAGACCGGGATCCCGGGCAAAGTGTGGGAGATTATGGAGCCGCATTCGCAGGTTGATCGTGTTGGTGGAATTGCTGTTCTTGCAGTGGTTATTCTTATTCTTTCAAACTTGGTATCAAATGTTCCAACTGGTAATGTTTCTCCTTCATTTCCATACTTGCTTCATATACTTCATCTTCCATCCATATTACAGGTTGATCATGTTAGGGATTTACCGTTTTAG MALAPTPKVILGSIAFAVFWVMAVFPAVPFLPIGRTAGTLLGAILMVIFRVITPDQAYDSIDLPILGLLFGTMVVSVYLERADMFKYIGKLLAWKSLGPKDLIFRICIISAISSAFFTNDTACVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKISFGLFLVGILPAMLVGVLVNSLMIIGMYWKLLSVHKDEEDAASEVVADEYSSHRFSPATMSSSHLSPSNSSGLDTHSENLRNRVESSDNEFHSFESSRMSETFQTAGTTTPETVAVKGEFITQLKLFLSGKVVSEKWKHILWKICVYLVTAGMLIALLCGLNMSWTAITAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPGKVWEIMEPHSQVDRVGGIAVLAVVILILSNLVSNVPTGNVSPSFPYLLHILHLPSILQVDHVRDLPF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04406.1 vs. NCBI nr
Match: gi|902236251|gb|KNA24290.1| (hypothetical protein SOVF_016970 [Spinacia oleracea]) HSP 1 Score: 870.5 bits (2248), Expect = 1.300e-249 Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 1
BLAST of Spo04406.1 vs. NCBI nr
Match: gi|731322346|ref|XP_010671838.1| (PREDICTED: putative transporter arsB [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 651.0 bits (1678), Expect = 1.600e-183 Identity = 351/448 (78.35%), Postives = 386/448 (86.16%), Query Frame = 1
BLAST of Spo04406.1 vs. NCBI nr
Match: gi|568874667|ref|XP_006490435.1| (PREDICTED: putative transporter arsB [Citrus sinensis]) HSP 1 Score: 574.7 bits (1480), Expect = 1.400e-160 Identity = 317/460 (68.91%), Postives = 367/460 (79.78%), Query Frame = 1
BLAST of Spo04406.1 vs. NCBI nr
Match: gi|1009109146|ref|XP_015888578.1| (PREDICTED: putative transporter arsB isoform X2 [Ziziphus jujuba]) HSP 1 Score: 572.0 bits (1473), Expect = 9.200e-160 Identity = 310/431 (71.93%), Postives = 352/431 (81.67%), Query Frame = 1
BLAST of Spo04406.1 vs. NCBI nr
Match: gi|1009109144|ref|XP_015888570.1| (PREDICTED: putative transporter arsB isoform X1 [Ziziphus jujuba]) HSP 1 Score: 572.0 bits (1473), Expect = 9.200e-160 Identity = 310/431 (71.93%), Postives = 352/431 (81.67%), Query Frame = 1
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_016970 PE=4 SV=1) HSP 1 Score: 870.5 bits (2248), Expect = 8.800e-250 Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 1
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CW90_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g055010 PE=4 SV=1) HSP 1 Score: 651.0 bits (1678), Expect = 1.100e-183 Identity = 351/448 (78.35%), Postives = 386/448 (86.16%), Query Frame = 1
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SC51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G011600 PE=4 SV=1) HSP 1 Score: 571.2 bits (1471), Expect = 1.100e-159 Identity = 312/439 (71.07%), Postives = 356/439 (81.09%), Query Frame = 1
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NFQ0_GOSAR (Putative transporter arsB OS=Gossypium arboreum GN=F383_19580 PE=4 SV=1) HSP 1 Score: 570.9 bits (1470), Expect = 1.400e-159 Identity = 310/439 (70.62%), Postives = 357/439 (81.32%), Query Frame = 1
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Match: A0A067D7P4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008970mg PE=4 SV=1) HSP 1 Score: 569.3 bits (1466), Expect = 4.200e-159 Identity = 316/460 (68.70%), Postives = 366/460 (79.57%), Query Frame = 1
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Match: ARSB_DICDI (Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 4.000e-30 Identity = 70/175 (40.00%), Postives = 112/175 (64.00%), Query Frame = 1
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Match: P_MOUSE (P protein OS=Mus musculus GN=Oca2 PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 2.000e-13 Identity = 109/451 (24.17%), Postives = 194/451 (43.02%), Query Frame = 1
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Match: P_PIG (P protein OS=Sus scrofa GN=Oca2 PE=2 SV=3) HSP 1 Score: 77.0 bits (188), Expect = 5.800e-13 Identity = 112/456 (24.56%), Postives = 188/456 (41.23%), Query Frame = 1
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Match: P_HUMAN (P protein OS=Homo sapiens GN=OCA2 PE=1 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 2.200e-12 Identity = 103/453 (22.74%), Postives = 187/453 (41.28%), Query Frame = 1
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Match: AG45_MYCLE (46 kDa membrane protein OS=Mycobacterium leprae (strain TN) GN=ag45 PE=3 SV=2) HSP 1 Score: 74.7 bits (182), Expect = 2.900e-12 Identity = 51/191 (26.70%), Postives = 99/191 (51.83%), Query Frame = 1
BLAST of Spo04406.1 vs. TAIR (Arabidopsis)
Match: AT1G02260.1 (Divalent ion symporter) HSP 1 Score: 527.7 bits (1358), Expect = 7.100e-150 Identity = 286/432 (66.20%), Postives = 350/432 (81.02%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04406.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04406.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04406.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04406.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|