Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAGAACTTTGCCGACTTGCGCACAAATTTGATTTAGCCAACCCCTCAAACAAAACACAAGAAGGTTGTGCATAGTTTTAGCGCACGTAGCAAATCAGCAAGAAACATTCGAGTTTCCCTGGCCTGTTCTCAAAAGCCCCTCTGCAATTACATATTTACATTATCCAAAGTTCTCAAAAACCCCTCTGCAATTTCTTCTCTTATTCCAGATTTCTCCCTATTAACACCAAAATTTATTGTTTTTCTGTATTTACACTGTATTGTTGTCTTCCTCCTTGCAAAGTTGGAGAATTTCTTCTTCTCCTTCAAAATCCCTCAAATGGGTGATTAAACTGTTGGTTAAATTGTGAATTTTGAGCATAAATGTCGCTGAAACTCACACCCTTCAACAAGGCATACGTTGTAATACCACCAATTTTCAACCCTACTTTCTGTACAAACATGCTTAGTTTGAGATACCCACCTCAAAATATTACCCCTAGTTTGGAATCTATTCATCTTTCCAGAAATTACAGCTCAAGATATGTGGTTGTAAGTTTGCTACTTGTAATTTTGCATTCAAGCTATCGTTTTTACTTCTTATTTTGGTGGAAATTTGATGGGTTTTGTTGGATTTCTTGGTTTGGCAGGTATGTGGGTTAAAAGGTCCTAGACCCAGATATCCTCGGGTATGGAAGACCCAGAAGAAAATTGGGACAATATCCAAATCCAGAAAGCTTGTTGATTGTGTAAGGTTACTTTTCTCTTGTTGTTTTGTTGAATTGCTATTTGCTATTGTCTTAATTTACACAATTATGCCATAACTTTTTGGGATTGTCAATCAATTTGTGTGTCTGTGTTGGGGGTAGGGGTAGGGTGAGCTACAAAGGGAAATGATGTAGACGATATTTGATCCGAGGTCTTAGTACCAATGCACAACACCCACTACTTTAACCAACTAAGCTAGTAGGCATCCACGAGAGGAAGGTATAGTTGATTGTTGATTGAAATTTATGAGTTATTGTGGTTTTGGACTTTACTGTTGCTTCTAAAGATGGCAATTTCATATATGTCTTTCGAGTTTGTAATGGTTTAAGTAGTACCTTGTATTGCTTTTCTTACAAATGTCTACCTATTATTCAACTTTTGTAAAGGATGGTGAGCAACTAGGATAGTAGAGGAAATGTAGTGGTCTCTGAATGATAAGCAATGAGGAAGAATATAGGATGTATATGTGGGATTTAATCCACTATTTTTTTAGCCCATGCCTGTCGTGTGCAGGATTTATCCGGTATTAGATTCAGGAATGAGAATTTGGATTAGGTTCGTATTTAATTCTTCGAATCAAATGTATAATGATAGTAGGATATTGCCCCCTTACTTCCATATTGTGAATAGACACCGCATAACAGTTAATGCAAAATCTGTGATGGGAGTAACTAAAACATCCTCTAAAAATGTGAGGGGGTGCGCCTAGAGCTAGGTTACCTTAATTTTTTTTTTTTTTTTGAATATCCTCTATGGTTATGGGGATATAGGGTGTGGATACGATACATGTAACTGAAATCCTACCCTTGCGAAGTTTCTCAAGTTTGGAGAGACTAACTTTATCTGGTTTGGATGTTTTAGTTTCACATGAAAGAACTTCAGGTCTTAGTAAATCACTTCGGATGAATTAAAACTGACTTTCTTAAAGAGTATCCTGTAATATAACATAACTGATAAAGAAAGCTAGATTTTCTGGAAGTCATAAAAGGGGCTCTTCAACTGGATCATCTCTTTGTTTGTTCTGGTTTTCTACTTTTGCTGCTTTGAAATAATGGTATAAAGTTTATTTACTACAGATAAAGGAATTGTCAAATGTTAAAGAAGAAGTATATGGGGCACTTGATTCGTTCATAGCGTGGGACTTGGAATTTCCTCTCATCACTGTAAAGAAAGCATTGAAGACATTAGAGAATGAAAAGGAATGGAAGAGAATAATTCAGGTAACAAGCAGTATAGAAGATCATTTTGATTAATGTGAGGAAATTTATCATTTGAACAAGCTGATTACTTGTAAATGTAGGTGACCAAATGGATGTTAAGCAAAGGTCAAGGAAGAACAATGGGAAGCTATTTTATGTTAATGAACGCATTAGGGGAGGAGGATAGACTTGAGGAGGCTGAAGAGTTGTGGACGAGATTATTTTCCGAGCATCTGGAAAGCACACCTCGCATGTTCTTTGACAAGATGATTGGGATTTACTATACCAGAGAGATGCATGACAAGATGTTTGATGTAAGTCCTATCCAGCTATCTTGTCTTCCATATACTGTCATTCCATTGCCTCCACCCCCNCCCCCCCACACACACACAAAAGATGACCGTGGGCCGGGCCGGCCTGAGCATGAAGTCGTAGGCCCTGGGCCGGGCCTGTGCTGTATTTTTTTAGAAAAAGGACGACAAGGCACGCTAAATTTAGTAAAACTAGGCTTAGGCACGATGGCCCGAACGGGCCCGGCGCGACATCCCGTGGGCCTGGTCCTGTTTTGAACTTTTCATCCCCGTCCGATGCAGAGTGGGCCAGGATGGACCCGACCCGTTAGGCCACGGCACGTGGGCAAGGCCGAAGCCCACAGTCAGCCCGCCCACACCCTGCCACCCAGACCAAGGTTTCCCAAATTTTCTTTGGTAAACAAGGTGGGAAGTTAAGTATTCGGTGTATACATCACCCGGCATCAAGGAACTCCGAATAATAAAAAGCTATCATACCAAATGAGCTGTTCTTTATCCTTGGTAATCACGTGTTATTGCTTGTTGAATGGTATTGCCTACTGTAACAGGAATATATAGGCAAAAACTATCTAGGTTAAATGTGGTTGTAGCTATTGTATATGAAATGCTCATGTAAGTATGTAACTGAGGTTATCTCCAAAAACTATTTGTGATTCTTAGCTTCCAGTATCTTGATTCACTATGCGATGCAGGATTAGAAAAACGGACCAACTGAGTGACTGATGTAAATAACATGTAGTGATGTATACTACTCCATAACAGAGTTATAACACAGGCTATATGTTGATGAATTATTTCCGCTTGCTGGTGATTCTTGTCTAACTCTTCGATTGTGGAGTTAAGGTGCGTATAGAATATACGAAGGATATCCAAAATTGCAATCACTGTTTTGGCATGTAATCTCTTTAAATGTACCTGTTTTATGCAATCCACATGCATGTAGAAAGTGCTAGTGACTAGAGGGATGTAGAAGCTTTTTTTAGTCTCATATTTGGTGGATTGCATAGTTTGGGACCTGAAATTACAAGTCTACCATCTTTTTGCCGCACAGAGTTACTTGTCCAATGAGCATTATTTTAGGAAAACAATGAAGACTTTGATTCCTCGAACAGTTTGATATAGTATAACACAACAGCAACATCACTTAGAGCAATCCTGCAGTTTTGCAATCCTGCAGTTTTGCAGTGTTTGAAACAATTGCACAATGCTTGAATTTCCAGTGTCATGGAATGATACTTGATAGATCTCTTGTTTAAGTGTGCATTGCAGTTCCAGTTTTGTTCATCGATTGTATGAGAGTGTGACTCGTGTTATTTTTAGGTTTTTGCTGATATGGAAGAGTTGGGTCTTCGGCCAACCACTTCAATTGTTAAAAATGTTGGAGCTGTGTTCCGGAAGCTTGGAATGATGGACAAATACGAAAAGCTGAACCAGAAATATCCGCCACCTAAGTGGGAATTTCGGTACATCAAGGGAAAACGTGTCAAAGTTCGAACTAAGCAGTCTGATGACTCCTCTGATGAAAATGATGTTGACGACTTGAATGAGCAAGGAGAGTCTAATGATAGTGACAACGAACATGATGTGCAACCAGATGGATTACAGGATGAAGAGGATAATTCTACCAAATTTATGGAATAGAAGTAGTTAACTGATGTTGTAATATAGTACAGATATCATGTTATATTATGCAGTATGGCTAAATCTGATATAGAAAAGATATGTAGTCTCATAGTGCAAAAATAACTGCACATTTGGAAATGAATGCAGTTTCATACTTTCATATGAGTATCAATTGCCTTCTTTAGTAAATCCGACTCAAAAGGTCTTGCAAACAAATAAACTTATTGTACATCATGATAACTTTTATCCAGTTTTTTTTTTTAACTTTTAACATGTTTTGATTAATTTTTATATTATGAAAATATTTGATGGATAAACATTTTAAAGGGTTAAAT CAAAAGAACTTTGCCGACTTGCGCACAAATTTGATTTAGCCAACCCCTCAAACAAAACACAAGAAGGTTGTGCATAGTTTTAGCGCACGTAGCAAATCAGCAAGAAACATTCGAGTTTCCCTGGCCTGTTCTCAAAAGCCCCTCTGCAATTACATATTTACATTATCCAAAGTTCTCAAAAACCCCTCTGCAATTTCTTCTCTTATTCCAGATTTCTCCCTATTAACACCAAAATTTATTGTTTTTCTGTATTTACACTGTATTGTTGTCTTCCTCCTTGCAAAGTTGGAGAATTTCTTCTTCTCCTTCAAAATCCCTCAAATGGGTGATTAAACTGTTGGTTAAATTGTGAATTTTGAGCATAAATGTCGCTGAAACTCACACCCTTCAACAAGGCATACGTTGTAATACCACCAATTTTCAACCCTACTTTCTGTACAAACATGCTTAGTTTGAGATACCCACCTCAAAATATTACCCCTAGTTTGGAATCTATTCATCTTTCCAGAAATTACAGCTCAAGATATGTGGTTGTATGTGGGTTAAAAGGTCCTAGACCCAGATATCCTCGGGTATGGAAGACCCAGAAGAAAATTGGGACAATATCCAAATCCAGAAAGCTTGTTGATTGTATAAAGGAATTGTCAAATGTTAAAGAAGAAGTATATGGGGCACTTGATTCGTTCATAGCGTGGGACTTGGAATTTCCTCTCATCACTGTAAAGAAAGCATTGAAGACATTAGAGAATGAAAAGGAATGGAAGAGAATAATTCAGGTGACCAAATGGATGTTAAGCAAAGGTCAAGGAAGAACAATGGGAAGCTATTTTATGTTAATGAACGCATTAGGGGAGGAGGATAGACTTGAGGAGGCTGAAGAGTTGTGGACGAGATTATTTTCCGAGCATCTGGAAAGCACACCTCGCATGTTCTTTGACAAGATGATTGGGATTTACTATACCAGAGAGATGCATGACAAGATGTTTGATGTTTTTGCTGATATGGAAGAGTTGGGTCTTCGGCCAACCACTTCAATTGTTAAAAATGTTGGAGCTGTGTTCCGGAAGCTTGGAATGATGGACAAATACGAAAAGCTGAACCAGAAATATCCGCCACCTAAGTGGGAATTTCGGTACATCAAGGGAAAACGTGTCAAAGTTCGAACTAAGCAGTCTGATGACTCCTCTGATGAAAATGATGTTGACGACTTGAATGAGCAAGGAGAGTCTAATGATAGTGACAACGAACATGATGTGCAACCAGATGGATTACAGGATGAAGAGGATAATTCTACCAAATTTATGGAATAGAAGTAGTTAACTGATGTTGTAATATAGTACAGATATCATGTTATATTATGCAGTATGGCTAAATCTGATATAGAAAAGATATGTAGTCTCATAGTGCAAAAATAACTGCACATTTGGAAATGAATGCAGTTTCATACTTTCATATGAGTATCAATTGCCTTCTTTAGTAAATCCGACTCAAAAGGTCTTGCAAACAAATAAACTTATTGTACATCATGATAACTTTTATCCAGTTTTTTTTTTTAACTTTTAACATGTTTTGATTAATTTTTATATTATGAAAATATTTGATGGATAAACATTTTAAAGGGTTAAAT ATGTCGCTGAAACTCACACCCTTCAACAAGGCATACGTTGTAATACCACCAATTTTCAACCCTACTTTCTGTACAAACATGCTTAGTTTGAGATACCCACCTCAAAATATTACCCCTAGTTTGGAATCTATTCATCTTTCCAGAAATTACAGCTCAAGATATGTGGTTGTATGTGGGTTAAAAGGTCCTAGACCCAGATATCCTCGGGTATGGAAGACCCAGAAGAAAATTGGGACAATATCCAAATCCAGAAAGCTTGTTGATTGTATAAAGGAATTGTCAAATGTTAAAGAAGAAGTATATGGGGCACTTGATTCGTTCATAGCGTGGGACTTGGAATTTCCTCTCATCACTGTAAAGAAAGCATTGAAGACATTAGAGAATGAAAAGGAATGGAAGAGAATAATTCAGGTGACCAAATGGATGTTAAGCAAAGGTCAAGGAAGAACAATGGGAAGCTATTTTATGTTAATGAACGCATTAGGGGAGGAGGATAGACTTGAGGAGGCTGAAGAGTTGTGGACGAGATTATTTTCCGAGCATCTGGAAAGCACACCTCGCATGTTCTTTGACAAGATGATTGGGATTTACTATACCAGAGAGATGCATGACAAGATGTTTGATGTTTTTGCTGATATGGAAGAGTTGGGTCTTCGGCCAACCACTTCAATTGTTAAAAATGTTGGAGCTGTGTTCCGGAAGCTTGGAATGATGGACAAATACGAAAAGCTGAACCAGAAATATCCGCCACCTAAGTGGGAATTTCGGTACATCAAGGGAAAACGTGTCAAAGTTCGAACTAAGCAGTCTGATGACTCCTCTGATGAAAATGATGTTGACGACTTGAATGAGCAAGGAGAGTCTAATGATAGTGACAACGAACATGATGTGCAACCAGATGGATTACAGGATGAAGAGGATAATTCTACCAAATTTATGGAATAG MSLKLTPFNKAYVVIPPIFNPTFCTNMLSLRYPPQNITPSLESIHLSRNYSSRYVVVCGLKGPRPRYPRVWKTQKKIGTISKSRKLVDCIKELSNVKEEVYGALDSFIAWDLEFPLITVKKALKTLENEKEWKRIIQVTKWMLSKGQGRTMGSYFMLMNALGEEDRLEEAEELWTRLFSEHLESTPRMFFDKMIGIYYTREMHDKMFDVFADMEELGLRPTTSIVKNVGAVFRKLGMMDKYEKLNQKYPPPKWEFRYIKGKRVKVRTKQSDDSSDENDVDDLNEQGESNDSDNEHDVQPDGLQDEEDNSTKFME Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04433.1 vs. NCBI nr
Match: gi|902165155|gb|KNA07069.1| (hypothetical protein SOVF_175320 [Spinacia oleracea]) HSP 1 Score: 627.5 bits (1617), Expect = 1.300e-176 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1
BLAST of Spo04433.1 vs. NCBI nr
Match: gi|731321903|ref|XP_010671597.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 466.8 bits (1200), Expect = 2.900e-128 Identity = 236/303 (77.89%), Postives = 260/303 (85.81%), Query Frame = 1
BLAST of Spo04433.1 vs. NCBI nr
Match: gi|225464623|ref|XP_002274318.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Vitis vinifera]) HSP 1 Score: 388.3 bits (996), Expect = 1.300e-104 Identity = 195/283 (68.90%), Postives = 237/283 (83.75%), Query Frame = 1
BLAST of Spo04433.1 vs. NCBI nr
Match: gi|698574915|ref|XP_009775791.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Nicotiana sylvestris]) HSP 1 Score: 381.7 bits (979), Expect = 1.200e-102 Identity = 198/280 (70.71%), Postives = 230/280 (82.14%), Query Frame = 1
BLAST of Spo04433.1 vs. NCBI nr
Match: gi|460376822|ref|XP_004234195.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Solanum lycopersicum]) HSP 1 Score: 378.6 bits (971), Expect = 1.000e-101 Identity = 197/286 (68.88%), Postives = 237/286 (82.87%), Query Frame = 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIJ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_175320 PE=4 SV=1) HSP 1 Score: 627.5 bits (1617), Expect = 8.900e-177 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CW31_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g053190 PE=4 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 2.000e-128 Identity = 236/303 (77.89%), Postives = 260/303 (85.81%), Query Frame = 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Match: E0CUT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g01450 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 9.100e-105 Identity = 195/283 (68.90%), Postives = 237/283 (83.75%), Query Frame = 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Match: K4BEI3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 7.200e-102 Identity = 197/286 (68.88%), Postives = 237/286 (82.87%), Query Frame = 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Match: M1AKD4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009505 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 2.300e-100 Identity = 196/289 (67.82%), Postives = 232/289 (80.28%), Query Frame = 1
BLAST of Spo04433.1 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 2.000e-92 Identity = 180/287 (62.72%), Postives = 219/287 (76.31%), Query Frame = 1
BLAST of Spo04433.1 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2) HSP 1 Score: 170.2 bits (430), Expect = 3.500e-41 Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 1
BLAST of Spo04433.1 vs. TAIR (Arabidopsis)
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 340.5 bits (872), Expect = 1.100e-93 Identity = 180/287 (62.72%), Postives = 219/287 (76.31%), Query Frame = 1
BLAST of Spo04433.1 vs. TAIR (Arabidopsis)
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 170.2 bits (430), Expect = 2.000e-42 Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 1
BLAST of Spo04433.1 vs. TAIR (Arabidopsis)
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4)) HSP 1 Score: 115.2 bits (287), Expect = 7.500e-26 Identity = 76/243 (31.28%), Postives = 126/243 (51.85%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04433.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo04433.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo04433.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2 Position : 0 Zoom : x 1
BLAST of Spo04433.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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