Spo04506 (gene) | SpinachBase

Overview


Name	Spo04506
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 31775582 .. 31777606 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGAGAGGAGAATAGGAGATGCAACTACGCTATTTGCCAGATTCGCAGGGGCAATTGAGGGGAGTGAAAGTGAATTCTAAATTTCCAGAAGCTTTTCTATCAAACGGCCTGACGCTCACGCGCCTGTCAGGTCGTCTGTTTCACCCACGCGCGCGTCAAATCACGCGCAATTTTTTTATTTTTTTATTTTTTTTCTCTCTCTCCTCTCACTCTTCTCCTGCAGCGACTCAACTCTCCTCTAACCTCTTCTCTTCGTTTCCTCAGTTCCAGATTCTCTCCTCTCCTCTCTGCACTCATCTCTCCTCGCCGGGGACAACCACCATTTTTTCCACCAGAAATCCACGGAGCTCCTCTCCTCTCCTCGTTCCTCTTCTAAAAAAACCTAAGAAAATCAGACGATGGAGGTGCGACGGTGGTGTGCGGCTGCTACATCGATCTTGCCCCCGATCTCTCTTCGTCCTCACACTTGCCAACGATCTCTCCTCTCAGTCACCGGAGATGTCAAGAAAACCCATCGTTTTCGTTTCTTTGAGATTATGTAAGTATATTTTTCATGTTCAATTTCGCACTAAAATCGCAAATCTAGGGTTTCGGTTTCTTCGTATATATCTTAGAGTTCTTAATTACGCTGATATAATTGAAATTATTCATTCGAATATGCATGAAATTATTGATTAAATTTACATTTTAGTTATCTCTTGTTAATTTTAGTTTTGATTTGTGGTACTTTAGTATGCATTCTTAGTTATGAATTAAATTAGTTAAAAAGTTCTCATATTTAGTAATGTTTTGTGGTGTTTAGTTTTCAGTACGAATTAGTTAATCCATGGTCATATTTAGTTAAGAATTTGCTTTGTTTAGTTAAGCTTTGTTGGAGTTATGGTTAGACTTTAGTCTAAAACCAGTTAAAATGATAAAAATGTAAATTCGGAGTGGCAGACATACAGTAGCCTATGAGTTCAGAACTAAGGTTGCCTAGCAAGAAGGTCAAAGGAAGATCTATGCTTAATAGACATAGACAAAATTTGACTAGATCGAGAACCATGCTTAATTGTCCTTTTGGTACCTGAGAATTTTGTTTGCTGTAAATTTCAGAAGCTGGCTCTGCCGCTCTTGGTAATAATAGGAATTTTCATGTTCTAGTCTTCAGCATTTGAGTAACCACCTTTATATTAGTGTGGTTGACAGTTGACATATTTGTGTTATGACTTCCAAGTGCTCAACTTGAAGAACATCTTGGATAATGCTCCGTTGTATGATGTCTGAAGATTGTATGTTCACATACTTCACGAGGGATATTTTATCCTTTCACATTGCAATGAAAAAATTGTTTTACTTTTATACTTTCTGATGATAAACTTTGGAGTTCAACTGTTCAACTTCACTGCTTGTAACCTTGTTGGTTTCTGTTTTCGTGTAGGTGAATGGTGAATGCTATTCATAAGCTTTCAGGAATTATTTGTAATTGTCCCATGCCAAACTTTTGTATCTGCTCGGTGGCTTTCAGGACATCGCTGAGTGGCTTACTGCCTTACCATGAATATGGCCCCAGTGCTGTTGCTAGAGATATTCAACTGATGATGAATCTAATTGTATAGTGCCTTCAAGTTTGAACGGTGTTCCTTGGCCCTGTTTTATGCTGGGATGGCCTGCTAGTGGCTCTTGTTGGCTGAGTATTGTGTAAATAAGTTGCTTTGTAGGACATTTTATTTGCATGATTTAGTCGACTCTAGAGTAGACCAGTTTCATTAGGTCTGGCTTAATAATATCAGGTTAACTGCAGTATGAATTTTTCATTTGTTTTACAATTTTCAGCTAATGTTAGTTAAGAAATAACTATCGCCCTCTTTCAATAATTCTCTTTGCCGTGCTTAAGTTGGTACTGGAGCAAGAAAAGTAATATAGAGGGTGATTATGCCAAAGAGTTGTTTATGATGGATGATTAGTATTCAGTAAGATTGTGTGACTTGATTTTTAACAGTCTGGTCTATGGAAAAAGTCGCGCTGACTTAATGTTTCCA

mRNA sequence

ATGCGGGAGAGGAGAATAGGAGATGCAACTACGCTATTTGCCAGATTCGCAGGGGCAATTGAGGGGAGTGAAACGACTCAACTCTCCTCTAACCTCTTCTCTTCGTTTCCTCAGTTCCAGATTCTCTCCTCTCCTCTCTGCACTCATCTCTCCTCGCCGGGGACAACCACCATTTTTTCCACCAGAAATCCACGGAGCTCCTCTCCTCTCCTCGTTCCTCTTCTAAAAAAACCTAAGAAAATCAGACGATGGAGGTGCGACGGTGGTGTGCGGCTGCTACATCGATCTTGCCCCCGATCTCTCTTCGTCCTCACACTTGCCAACGATCTCTCCTCTCAGTCACCGGAGATGTCAAGAAAACCCATCGTTTTCGTTTCTTTGAGATTATGTGAATGGTGAATGCTATTCATAAGCTTTCAGGAATTATTTGTAATTGTCCCATGCCAAACTTTTGTATCTGCTCGGTGGCTTTCAGGACATCGCTGAGTGGCTTACTGCCTTACCATGAATATGGCCCCAGTGCTGTTGCTAGAGATATTCAACTGATGATGAATCTAATTGTATAGTGCCTTCAAGTTTGAACGGTGTTCCTTGGCCCTGTTTTATGCTGGGATGGCCTGCTAGTGGCTCTTGTTGGCTGAGTATTGTGTAAATAAGTTGCTTTGTAGGACATTTTATTTGCATGATTTAGTCGACTCTAGAGTAGACCAGTTTCATTAGGTCTGGCTTAATAATATCAGGTTAACTGCAGTATGAATTTTTCATTTGTTTTACAATTTTCAGCTAATGTTAGTTAAGAAATAACTATCGCCCTCTTTCAATAATTCTCTTTGCCGTGCTTAAGTTGGTACTGGAGCAAGAAAAGTAATATAGAGGGTGATTATGCCAAAGAGTTGTTTATGATGGATGATTAGTATTCAGTAAGATTGTGTGACTTGATTTTTAACAGTCTGGTCTATGGAAAAAGTCGCGCTGACTTAATGTTTCCA

Coding sequence (CDS)

ATGCGGGAGAGGAGAATAGGAGATGCAACTACGCTATTTGCCAGATTCGCAGGGGCAATTGAGGGGAGTGAAACGACTCAACTCTCCTCTAACCTCTTCTCTTCGTTTCCTCAGTTCCAGATTCTCTCCTCTCCTCTCTGCACTCATCTCTCCTCGCCGGGGACAACCACCATTTTTTCCACCAGAAATCCACGGAGCTCCTCTCCTCTCCTCGTTCCTCTTCTAAAAAAACCTAAGAAAATCAGACGATGGAGGTGCGACGGTGGTGTGCGGCTGCTACATCGATCTTGCCCCCGATCTCTCTTCGTCCTCACACTTGCCAACGATCTCTCCTCTCAGTCACCGGAGATGTCAAGAAAACCCATCGTTTTCGTTTCTTTGAGATTATGTGAATGGTGA

Protein sequence

MRERRIGDATTLFARFAGAIEGSETTQLSSNLFSSFPQFQILSSPLCTHLSSPGTTTIFSTRNPRSSSPLLVPLLKKPKKIRRWRCDGGVRLLHRSCPRSLFVLTLANDLSSQSPEMSRKPIVFVSLRLCEW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04506.1	Spo04506.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo04506.1 vs. NCBI nr
BLAST of Spo04506.1 vs. UniProtKB/TrEMBL
BLAST of Spo04506.1 vs. ExPASy Swiss-Prot
BLAST of Spo04506.1 vs. TAIR (Arabidopsis)

BLAST of Spo04506.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04506.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04506.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04506.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20225	0.69	Barchart \| Table
Spo26887	0.67	Barchart \| Table
Spo24925	0.66	Barchart \| Table